Experiment: 1-ethyl-3-methylimidazolium chloride 80 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tauC and tauD overlap by 4 nucleotides tauD and hemB are separated by 106 nucleotides hemB and yaiT are separated by 523 nucleotides
b0367: tauC - taurine transporter subunit (NCBI), at 386,195 to 387,022
tauC
b0368: tauD - taurine dioxygenase (NCBI), at 387,019 to 387,870
tauD
b0369: hemB - 5-aminolevulinate dehydratase = porphobilinogen synthase (VIMSS), at 387,977 to 388,951
hemB
b4580: yaiT - no description, at 389,475 to 390,932
yaiT
Position (kb) 387
388
389 Strain fitness (log2 ratio) -2
-1
0
1
2 at 387.043 kb on - strand at 387.266 kb on + strand, within tauD at 387.266 kb on + strand, within tauD at 387.410 kb on + strand, within tauD at 387.622 kb on + strand, within tauD at 387.649 kb on + strand, within tauD at 387.649 kb on + strand, within tauD at 387.669 kb on - strand, within tauD at 387.678 kb on + strand, within tauD at 387.775 kb on + strand, within tauD at 387.775 kb on + strand, within tauD at 387.783 kb on - strand, within tauD at 387.896 kb on + strand at 387.908 kb on + strand at 387.908 kb on + strand at 387.916 kb on - strand at 387.916 kb on - strand at 387.916 kb on - strand at 388.942 kb on + strand at 388.947 kb on + strand at 388.947 kb on + strand at 388.947 kb on + strand at 388.986 kb on + strand at 388.992 kb on - strand at 388.992 kb on - strand at 388.992 kb on - strand at 388.992 kb on - strand at 388.992 kb on - strand at 388.992 kb on - strand at 388.993 kb on - strand at 388.994 kb on - strand at 389.000 kb on + strand at 389.000 kb on + strand at 389.008 kb on - strand at 389.008 kb on - strand at 389.032 kb on + strand at 389.035 kb on + strand at 389.057 kb on + strand at 389.158 kb on + strand at 389.465 kb on - strand at 389.468 kb on - strand at 389.488 kb on - strand at 389.520 kb on + strand at 389.539 kb on - strand at 389.540 kb on + strand at 389.541 kb on + strand at 389.541 kb on + strand at 389.546 kb on + strand at 389.546 kb on + strand at 389.546 kb on + strand at 389.546 kb on + strand at 389.546 kb on + strand at 389.549 kb on - strand at 389.554 kb on - strand at 389.554 kb on - strand at 389.554 kb on - strand at 389.554 kb on - strand at 389.554 kb on - strand at 389.559 kb on + strand at 389.569 kb on - strand at 389.573 kb on + strand at 389.573 kb on + strand at 389.573 kb on + strand at 389.603 kb on + strand at 389.604 kb on + strand at 389.612 kb on - strand at 389.612 kb on - strand at 389.613 kb on + strand at 389.613 kb on + strand at 389.618 kb on + strand at 389.621 kb on - strand, within yaiT at 389.629 kb on + strand, within yaiT at 389.629 kb on + strand, within yaiT at 389.629 kb on + strand, within yaiT at 389.629 kb on + strand, within yaiT at 389.632 kb on + strand, within yaiT at 389.632 kb on + strand, within yaiT at 389.632 kb on + strand, within yaiT at 389.632 kb on + strand, within yaiT at 389.637 kb on + strand, within yaiT at 389.637 kb on + strand, within yaiT at 389.645 kb on - strand, within yaiT at 389.647 kb on + strand, within yaiT at 389.647 kb on + strand, within yaiT at 389.647 kb on + strand, within yaiT at 389.647 kb on + strand, within yaiT at 389.647 kb on + strand, within yaiT at 389.649 kb on - strand, within yaiT at 389.664 kb on - strand, within yaiT at 389.675 kb on + strand, within yaiT at 389.706 kb on + strand, within yaiT at 389.706 kb on + strand, within yaiT at 389.713 kb on + strand, within yaiT at 389.713 kb on - strand, within yaiT at 389.740 kb on + strand, within yaiT at 389.746 kb on + strand, within yaiT at 389.746 kb on + strand, within yaiT at 389.751 kb on + strand, within yaiT at 389.765 kb on + strand, within yaiT at 389.768 kb on + strand, within yaiT at 389.768 kb on + strand, within yaiT at 389.770 kb on + strand, within yaiT at 389.770 kb on + strand, within yaiT at 389.770 kb on + strand, within yaiT at 389.778 kb on - strand, within yaiT at 389.778 kb on - strand, within yaiT at 389.783 kb on + strand, within yaiT at 389.795 kb on - strand, within yaiT at 389.797 kb on + strand, within yaiT at 389.852 kb on + strand, within yaiT at 389.880 kb on + strand, within yaiT at 389.888 kb on + strand, within yaiT at 389.908 kb on + strand, within yaiT at 389.908 kb on + strand, within yaiT at 389.908 kb on + strand, within yaiT at 389.910 kb on + strand, within yaiT at 389.910 kb on + strand, within yaiT at 389.911 kb on + strand, within yaiT at 389.911 kb on + strand, within yaiT at 389.914 kb on - strand, within yaiT at 389.914 kb on - strand, within yaiT at 389.915 kb on + strand, within yaiT at 389.915 kb on + strand, within yaiT at 389.916 kb on - strand, within yaiT at 389.916 kb on - strand, within yaiT at 389.918 kb on + strand, within yaiT at 389.935 kb on + strand, within yaiT
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 80 mM remove 387,043 - +0.6 387,266 + tauD b0368 0.29 -0.2 387,266 + tauD b0368 0.29 +1.7 387,410 + tauD b0368 0.46 -0.8 387,622 + tauD b0368 0.71 +0.7 387,649 + tauD b0368 0.74 +1.1 387,649 + tauD b0368 0.74 +2.1 387,669 - tauD b0368 0.76 +1.1 387,678 + tauD b0368 0.77 +0.1 387,775 + tauD b0368 0.89 +1.1 387,775 + tauD b0368 0.89 -2.2 387,783 - tauD b0368 0.90 +0.9 387,896 + +0.0 387,908 + -0.7 387,908 + -0.0 387,916 - +0.4 387,916 - +0.9 387,916 - -1.3 388,942 + +0.8 388,947 + -0.4 388,947 + +0.0 388,947 + +0.1 388,986 + +0.2 388,992 - +0.9 388,992 - +0.2 388,992 - -0.6 388,992 - -0.7 388,992 - -0.5 388,992 - +1.4 388,993 - +0.7 388,994 - -0.5 389,000 + -0.8 389,000 + -1.5 389,008 - +0.1 389,008 - +0.0 389,032 + -0.0 389,035 + -1.6 389,057 + -0.9 389,158 + -2.2 389,465 - -1.2 389,468 - -0.5 389,488 - -1.0 389,520 + -1.3 389,539 - -0.1 389,540 + +1.4 389,541 + +0.1 389,541 + +0.4 389,546 + +0.9 389,546 + -1.2 389,546 + +0.1 389,546 + +0.1 389,546 + +0.2 389,549 - -2.2 389,554 - -0.6 389,554 - -0.3 389,554 - -0.7 389,554 - -0.5 389,554 - -1.6 389,559 + -0.6 389,569 - -0.7 389,573 + -0.2 389,573 + +0.6 389,573 + -0.0 389,603 + -0.3 389,604 + -0.2 389,612 - +0.5 389,612 - -0.4 389,613 + -0.5 389,613 + +0.1 389,618 + -0.2 389,621 - yaiT b4580 0.10 -0.5 389,629 + yaiT b4580 0.11 -0.2 389,629 + yaiT b4580 0.11 +1.4 389,629 + yaiT b4580 0.11 +0.1 389,629 + yaiT b4580 0.11 +1.0 389,632 + yaiT b4580 0.11 -1.1 389,632 + yaiT b4580 0.11 -0.4 389,632 + yaiT b4580 0.11 +0.1 389,632 + yaiT b4580 0.11 -1.0 389,637 + yaiT b4580 0.11 +0.1 389,637 + yaiT b4580 0.11 +0.4 389,645 - yaiT b4580 0.12 -1.0 389,647 + yaiT b4580 0.12 +0.7 389,647 + yaiT b4580 0.12 -0.4 389,647 + yaiT b4580 0.12 +0.3 389,647 + yaiT b4580 0.12 +0.7 389,647 + yaiT b4580 0.12 +0.1 389,649 - yaiT b4580 0.12 -0.7 389,664 - yaiT b4580 0.13 +0.1 389,675 + yaiT b4580 0.14 -0.2 389,706 + yaiT b4580 0.16 +0.3 389,706 + yaiT b4580 0.16 +1.6 389,713 + yaiT b4580 0.16 +0.4 389,713 - yaiT b4580 0.16 -0.1 389,740 + yaiT b4580 0.18 +0.1 389,746 + yaiT b4580 0.19 -0.5 389,746 + yaiT b4580 0.19 +0.7 389,751 + yaiT b4580 0.19 +0.4 389,765 + yaiT b4580 0.20 -0.4 389,768 + yaiT b4580 0.20 -1.0 389,768 + yaiT b4580 0.20 +0.9 389,770 + yaiT b4580 0.20 -0.2 389,770 + yaiT b4580 0.20 +0.5 389,770 + yaiT b4580 0.20 -0.1 389,778 - yaiT b4580 0.21 -0.7 389,778 - yaiT b4580 0.21 +0.8 389,783 + yaiT b4580 0.21 +0.2 389,795 - yaiT b4580 0.22 +0.2 389,797 + yaiT b4580 0.22 -0.4 389,852 + yaiT b4580 0.26 -0.1 389,880 + yaiT b4580 0.28 -1.5 389,888 + yaiT b4580 0.28 -0.3 389,908 + yaiT b4580 0.30 +0.1 389,908 + yaiT b4580 0.30 -0.9 389,908 + yaiT b4580 0.30 +0.1 389,910 + yaiT b4580 0.30 +1.1 389,910 + yaiT b4580 0.30 -1.2 389,911 + yaiT b4580 0.30 +0.0 389,911 + yaiT b4580 0.30 -1.5 389,914 - yaiT b4580 0.30 -1.9 389,914 - yaiT b4580 0.30 -0.2 389,915 + yaiT b4580 0.30 -1.6 389,915 + yaiT b4580 0.30 -0.5 389,916 - yaiT b4580 0.30 -1.0 389,916 - yaiT b4580 0.30 -2.1 389,918 + yaiT b4580 0.30 -1.0 389,935 + yaiT b4580 0.32 +0.1
Or see this region's nucleotide sequence