Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5020 and Psyr_5021 are separated by 311 nucleotides Psyr_5021 and Psyr_5022 are separated by 86 nucleotides Psyr_5022 and Psyr_5023 are separated by 38 nucleotides Psyr_5023 and Psyr_5024 overlap by 4 nucleotides
Psyr_5020: Psyr_5020 - conserved hypothetical protein, at 5,962,579 to 5,962,794
_5020
Psyr_5021: Psyr_5021 - conserved hypothetical protein, at 5,963,106 to 5,963,423
_5021
Psyr_5022: Psyr_5022 - conserved hypothetical protein, at 5,963,510 to 5,963,815
_5022
Psyr_5023: Psyr_5023 - conserved hypothetical protein, at 5,963,854 to 5,964,174
_5023
Psyr_5024: Psyr_5024 - conserved hypothetical protein, at 5,964,171 to 5,966,132
_5024
Position (kb) 5963
5964 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5962.587 kb on + strand at 5962.587 kb on + strand at 5962.588 kb on - strand at 5962.588 kb on - strand at 5962.588 kb on - strand at 5962.655 kb on + strand, within Psyr_5020 at 5962.821 kb on + strand at 5962.853 kb on + strand at 5962.853 kb on + strand at 5962.854 kb on - strand at 5962.854 kb on - strand at 5962.854 kb on - strand at 5962.854 kb on - strand at 5962.854 kb on - strand at 5962.854 kb on - strand at 5962.948 kb on - strand at 5962.948 kb on - strand at 5962.959 kb on + strand at 5962.960 kb on - strand at 5962.960 kb on - strand at 5962.972 kb on + strand at 5962.973 kb on - strand at 5962.973 kb on - strand at 5963.032 kb on + strand at 5963.037 kb on + strand at 5963.045 kb on + strand at 5963.116 kb on + strand at 5963.116 kb on + strand at 5963.116 kb on + strand at 5963.116 kb on + strand at 5963.116 kb on + strand at 5963.121 kb on - strand at 5963.121 kb on - strand at 5963.121 kb on - strand at 5963.518 kb on - strand at 5963.531 kb on + strand at 5963.531 kb on + strand at 5963.531 kb on + strand at 5963.531 kb on + strand at 5963.531 kb on + strand at 5963.531 kb on + strand at 5963.532 kb on - strand at 5963.532 kb on - strand at 5963.532 kb on - strand at 5963.532 kb on - strand at 5963.532 kb on - strand at 5963.532 kb on - strand at 5963.532 kb on - strand at 5963.532 kb on - strand at 5963.532 kb on - strand at 5963.532 kb on - strand at 5963.532 kb on - strand at 5963.532 kb on - strand at 5963.532 kb on - strand at 5963.532 kb on - strand at 5963.532 kb on - strand at 5963.558 kb on + strand, within Psyr_5022 at 5963.558 kb on + strand, within Psyr_5022 at 5963.558 kb on + strand, within Psyr_5022 at 5963.558 kb on + strand, within Psyr_5022 at 5963.558 kb on + strand, within Psyr_5022 at 5963.558 kb on + strand, within Psyr_5022 at 5963.558 kb on + strand, within Psyr_5022 at 5963.559 kb on - strand, within Psyr_5022 at 5963.559 kb on - strand, within Psyr_5022 at 5963.559 kb on - strand, within Psyr_5022 at 5963.559 kb on - strand, within Psyr_5022 at 5963.559 kb on - strand, within Psyr_5022 at 5963.559 kb on - strand, within Psyr_5022 at 5963.559 kb on - strand, within Psyr_5022 at 5963.559 kb on - strand, within Psyr_5022 at 5963.559 kb on - strand, within Psyr_5022 at 5963.559 kb on - strand, within Psyr_5022 at 5963.559 kb on - strand, within Psyr_5022 at 5963.559 kb on - strand, within Psyr_5022 at 5963.836 kb on - strand at 5963.851 kb on + strand at 5963.851 kb on + strand at 5963.851 kb on + strand at 5963.851 kb on + strand at 5963.851 kb on + strand at 5963.851 kb on + strand at 5963.851 kb on + strand at 5963.851 kb on + strand at 5963.851 kb on + strand at 5963.851 kb on + strand at 5963.851 kb on + strand at 5963.851 kb on + strand at 5963.851 kb on + strand at 5963.852 kb on - strand at 5963.852 kb on - strand at 5963.852 kb on - strand at 5963.852 kb on - strand at 5963.852 kb on - strand at 5963.852 kb on - strand at 5963.852 kb on - strand at 5963.852 kb on - strand at 5963.852 kb on - strand at 5963.965 kb on - strand, within Psyr_5023 at 5964.046 kb on + strand, within Psyr_5023 at 5964.046 kb on + strand, within Psyr_5023 at 5964.046 kb on + strand, within Psyr_5023 at 5964.046 kb on + strand, within Psyr_5023 at 5964.046 kb on + strand, within Psyr_5023 at 5964.046 kb on + strand, within Psyr_5023 at 5964.047 kb on - strand, within Psyr_5023 at 5964.047 kb on - strand, within Psyr_5023 at 5964.047 kb on - strand, within Psyr_5023 at 5964.047 kb on - strand, within Psyr_5023 at 5964.047 kb on - strand, within Psyr_5023 at 5964.047 kb on - strand, within Psyr_5023 at 5964.047 kb on - strand, within Psyr_5023 at 5964.047 kb on - strand, within Psyr_5023 at 5964.399 kb on + strand, within Psyr_5024 at 5964.429 kb on + strand, within Psyr_5024 at 5964.555 kb on + strand, within Psyr_5024 at 5964.729 kb on + strand, within Psyr_5024 at 5964.729 kb on + strand, within Psyr_5024 at 5964.729 kb on + strand, within Psyr_5024 at 5964.729 kb on + strand, within Psyr_5024 at 5964.729 kb on + strand, within Psyr_5024 at 5964.729 kb on + strand, within Psyr_5024 at 5964.729 kb on + strand, within Psyr_5024 at 5964.729 kb on + strand, within Psyr_5024 at 5964.729 kb on + strand, within Psyr_5024 at 5964.729 kb on + strand, within Psyr_5024 at 5964.730 kb on - strand, within Psyr_5024 at 5964.730 kb on - strand, within Psyr_5024 at 5964.730 kb on - strand, within Psyr_5024 at 5964.730 kb on - strand, within Psyr_5024 at 5964.730 kb on - strand, within Psyr_5024 at 5964.730 kb on - strand, within Psyr_5024 at 5964.730 kb on - strand, within Psyr_5024 at 5964.730 kb on - strand, within Psyr_5024 at 5964.730 kb on - strand, within Psyr_5024 at 5964.761 kb on + strand, within Psyr_5024 at 5964.762 kb on - strand, within Psyr_5024 at 5964.762 kb on - strand, within Psyr_5024 at 5964.792 kb on + strand, within Psyr_5024 at 5964.792 kb on + strand, within Psyr_5024 at 5964.792 kb on + strand, within Psyr_5024 at 5964.792 kb on + strand, within Psyr_5024 at 5964.793 kb on - strand, within Psyr_5024 at 5964.793 kb on - strand, within Psyr_5024
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 5,962,587 + -1.2 5,962,587 + +0.4 5,962,588 - -0.9 5,962,588 - -0.4 5,962,588 - -0.3 5,962,655 + Psyr_5020 0.35 -1.2 5,962,821 + -0.0 5,962,853 + +0.9 5,962,853 + +0.3 5,962,854 - +0.0 5,962,854 - +2.7 5,962,854 - -2.0 5,962,854 - +2.8 5,962,854 - -2.6 5,962,854 - +1.1 5,962,948 - -1.3 5,962,948 - -0.5 5,962,959 + -2.2 5,962,960 - -0.4 5,962,960 - +0.0 5,962,972 + -0.7 5,962,973 - +0.9 5,962,973 - +0.9 5,963,032 + -1.0 5,963,037 + -0.6 5,963,045 + -0.0 5,963,116 + -0.9 5,963,116 + +3.2 5,963,116 + -0.8 5,963,116 + +1.0 5,963,116 + +1.4 5,963,121 - +0.5 5,963,121 - +2.3 5,963,121 - -0.2 5,963,518 - -1.2 5,963,531 + +1.3 5,963,531 + -0.1 5,963,531 + +0.3 5,963,531 + +0.3 5,963,531 + +0.8 5,963,531 + +1.5 5,963,532 - -3.3 5,963,532 - +1.5 5,963,532 - -2.6 5,963,532 - -1.9 5,963,532 - +1.8 5,963,532 - -0.2 5,963,532 - +0.8 5,963,532 - -0.6 5,963,532 - +1.4 5,963,532 - -2.4 5,963,532 - +0.2 5,963,532 - +0.6 5,963,532 - -1.9 5,963,532 - -0.9 5,963,532 - -1.6 5,963,558 + Psyr_5022 0.16 -1.0 5,963,558 + Psyr_5022 0.16 +3.0 5,963,558 + Psyr_5022 0.16 +2.9 5,963,558 + Psyr_5022 0.16 -0.4 5,963,558 + Psyr_5022 0.16 +0.6 5,963,558 + Psyr_5022 0.16 -1.6 5,963,558 + Psyr_5022 0.16 +0.9 5,963,559 - Psyr_5022 0.16 +1.7 5,963,559 - Psyr_5022 0.16 -0.1 5,963,559 - Psyr_5022 0.16 -0.3 5,963,559 - Psyr_5022 0.16 +1.7 5,963,559 - Psyr_5022 0.16 +0.7 5,963,559 - Psyr_5022 0.16 -1.9 5,963,559 - Psyr_5022 0.16 +0.4 5,963,559 - Psyr_5022 0.16 -0.2 5,963,559 - Psyr_5022 0.16 +0.1 5,963,559 - Psyr_5022 0.16 -1.4 5,963,559 - Psyr_5022 0.16 +1.2 5,963,559 - Psyr_5022 0.16 -0.7 5,963,836 - -0.4 5,963,851 + -2.9 5,963,851 + +1.0 5,963,851 + +0.4 5,963,851 + +1.1 5,963,851 + +0.7 5,963,851 + +3.7 5,963,851 + +0.8 5,963,851 + -2.4 5,963,851 + -1.1 5,963,851 + -0.7 5,963,851 + -1.1 5,963,851 + +1.5 5,963,851 + -0.7 5,963,852 - +0.3 5,963,852 - +1.6 5,963,852 - +1.0 5,963,852 - -2.0 5,963,852 - -0.0 5,963,852 - +0.8 5,963,852 - +0.5 5,963,852 - -4.0 5,963,852 - +1.5 5,963,965 - Psyr_5023 0.35 -1.5 5,964,046 + Psyr_5023 0.60 -0.5 5,964,046 + Psyr_5023 0.60 +2.9 5,964,046 + Psyr_5023 0.60 -0.7 5,964,046 + Psyr_5023 0.60 +0.0 5,964,046 + Psyr_5023 0.60 +0.4 5,964,046 + Psyr_5023 0.60 -0.3 5,964,047 - Psyr_5023 0.60 -2.8 5,964,047 - Psyr_5023 0.60 +0.6 5,964,047 - Psyr_5023 0.60 -0.0 5,964,047 - Psyr_5023 0.60 +2.0 5,964,047 - Psyr_5023 0.60 -2.6 5,964,047 - Psyr_5023 0.60 +0.2 5,964,047 - Psyr_5023 0.60 -2.9 5,964,047 - Psyr_5023 0.60 +0.6 5,964,399 + Psyr_5024 0.12 -0.1 5,964,429 + Psyr_5024 0.13 -0.3 5,964,555 + Psyr_5024 0.20 +1.1 5,964,729 + Psyr_5024 0.28 +0.7 5,964,729 + Psyr_5024 0.28 -1.7 5,964,729 + Psyr_5024 0.28 -0.5 5,964,729 + Psyr_5024 0.28 -0.2 5,964,729 + Psyr_5024 0.28 -0.4 5,964,729 + Psyr_5024 0.28 +0.9 5,964,729 + Psyr_5024 0.28 +1.4 5,964,729 + Psyr_5024 0.28 -0.2 5,964,729 + Psyr_5024 0.28 -1.9 5,964,729 + Psyr_5024 0.28 +0.6 5,964,730 - Psyr_5024 0.28 -0.3 5,964,730 - Psyr_5024 0.28 -1.5 5,964,730 - Psyr_5024 0.28 +1.1 5,964,730 - Psyr_5024 0.28 -2.9 5,964,730 - Psyr_5024 0.28 -0.3 5,964,730 - Psyr_5024 0.28 +2.0 5,964,730 - Psyr_5024 0.28 -1.0 5,964,730 - Psyr_5024 0.28 +0.8 5,964,730 - Psyr_5024 0.28 +1.7 5,964,761 + Psyr_5024 0.30 +2.1 5,964,762 - Psyr_5024 0.30 -1.2 5,964,762 - Psyr_5024 0.30 -1.2 5,964,792 + Psyr_5024 0.32 -2.7 5,964,792 + Psyr_5024 0.32 -2.4 5,964,792 + Psyr_5024 0.32 +0.1 5,964,792 + Psyr_5024 0.32 -1.7 5,964,793 - Psyr_5024 0.32 +1.0 5,964,793 - Psyr_5024 0.32 +0.7
Or see this region's nucleotide sequence