Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4320

Experiment: apoplastic, chopping recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, chopping recovery; Green bean
5,169,891	+				+0.4
5,169,957	+				+0.2
5,169,957	+				-0.9
5,169,957	+				+0.2
5,169,957	+				-2.7
5,169,958	-				-0.3
5,169,958	-				+0.4
5,169,958	-				+0.7
5,169,958	-				-1.5
5,169,959	+				+2.4
5,169,959	+				+1.0
5,169,959	+				+1.7
5,169,959	+				-0.2
5,169,959	+				+0.2
5,169,959	+				-0.5
5,169,959	+				-2.1
5,169,960	-				-1.7
5,169,962	+				-2.2
5,169,963	-				-0.3
5,170,021	+				+0.6
5,170,021	+				+2.6
5,170,021	+				-2.0
5,170,021	+				-1.3
5,170,021	+				+0.5
5,170,021	+				-0.7
5,170,021	+				+3.1
5,170,021	+				+2.1
5,170,021	+				-0.9
5,170,021	+				+1.0
5,170,021	+				-0.8
5,170,021	+				-2.0
5,170,021	+				+0.5
5,170,021	+				-1.3
5,170,022	-				-0.5
5,170,022	-				+0.8
5,170,022	-				-0.8
5,170,022	-				+0.3
5,170,022	-				+1.3
5,170,026	-				+0.7
5,170,026	-				+0.8
5,170,026	-				+0.8
5,170,031	+				+1.4
5,170,031	+				+1.0
5,170,031	+				+0.7
5,170,031	+				+0.3
5,170,031	+				-0.8
5,170,031	+				+0.8
5,170,031	+				+1.3
5,170,031	+				+1.0
5,170,072	+				+0.3
5,170,072	+				-2.2
5,170,072	+				+0.9
5,170,073	-				+1.2
5,170,109	+				+0.7
5,170,109	+				-1.6
5,170,110	-				+1.4
5,170,110	-				+0.8
5,170,110	-				+0.0
5,170,114	+				-2.9
5,170,130	+				+0.7
5,170,131	-				+0.0
5,170,166	-				-0.7
5,170,196	+				+1.4
5,170,196	+				+1.3
5,170,197	-				+1.5
5,170,231	+				-0.4
5,170,231	+				-0.3
5,170,238	-				+1.5
5,170,263	-				-0.4
5,170,377	+				+1.6
5,170,377	+				-1.1
5,170,377	+				+0.6
5,170,377	+				+1.2
5,170,377	+				-0.4
5,170,452	+				-0.2
5,170,452	+				-0.7
5,170,452	+				+0.1
5,170,452	+				-0.6
5,170,453	-				-2.6
5,170,502	+		Psyr_4319	0.13	+2.5
5,170,502	+		Psyr_4319	0.13	+0.0
5,170,502	+		Psyr_4319	0.13	+0.0
5,170,502	+		Psyr_4319	0.13	-1.8
5,170,502	+		Psyr_4319	0.13	+0.2
5,170,502	+		Psyr_4319	0.13	-0.2
5,170,502	+		Psyr_4319	0.13	+0.0
5,170,502	+		Psyr_4319	0.13	-0.5
5,170,502	+		Psyr_4319	0.13	-0.1
5,170,502	+		Psyr_4319	0.13	-1.1
5,170,502	+		Psyr_4319	0.13	-0.6
5,170,502	+		Psyr_4319	0.13	+0.4
5,170,503	-		Psyr_4319	0.13	-1.7
5,170,503	-		Psyr_4319	0.13	-0.3
5,170,503	-		Psyr_4319	0.13	+0.2
5,170,503	-		Psyr_4319	0.13	-1.8
5,170,503	-		Psyr_4319	0.13	-0.6
5,170,503	-		Psyr_4319	0.13	+1.1
5,170,503	-		Psyr_4319	0.13	+0.4
5,170,565	-		Psyr_4319	0.29	+0.1
5,170,565	-		Psyr_4319	0.29	-3.1
5,170,566	+		Psyr_4319	0.29	+0.4
5,170,566	+		Psyr_4319	0.29	+1.7
5,170,567	-		Psyr_4319	0.29	-0.6
5,170,567	-		Psyr_4319	0.29	+0.3
5,170,567	-		Psyr_4319	0.29	+0.2
5,170,621	+		Psyr_4319	0.43	-1.0
5,170,647	+		Psyr_4319	0.49	-2.6
5,170,647	+		Psyr_4319	0.49	-0.5
5,170,648	-		Psyr_4319	0.50	-2.4
5,170,713	+		Psyr_4319	0.66	+0.7
5,170,713	+		Psyr_4319	0.66	+0.9
5,170,713	+		Psyr_4319	0.66	-0.5
5,170,713	+		Psyr_4319	0.66	-0.8
5,170,714	-		Psyr_4319	0.66	-3.4
5,170,714	-		Psyr_4319	0.66	+0.4
5,170,714	-		Psyr_4319	0.66	-0.0
5,170,746	+		Psyr_4319	0.74	-1.7
5,170,746	+		Psyr_4319	0.74	-2.7
5,170,747	-		Psyr_4319	0.75	+1.0
5,170,747	-		Psyr_4319	0.75	-2.1
5,170,747	-		Psyr_4319	0.75	-1.9
5,170,747	-		Psyr_4319	0.75	-1.7
5,170,747	-		Psyr_4319	0.75	-2.8
5,170,747	-		Psyr_4319	0.75	-0.6
5,170,876	+				+0.3
5,170,876	+				+0.2
5,170,877	-				-2.1
5,170,877	-				+0.5
5,170,877	-				-0.5
5,170,877	-				-0.6
5,170,888	+				+2.0
5,170,888	+				-1.0
5,170,888	+				+0.3
5,170,888	+				-1.4
5,170,888	+				+0.8
5,170,888	+				+0.3
5,170,889	-				-1.3
5,170,889	-				-1.4
5,170,949	-				-1.8
5,170,993	+				+1.9
5,170,993	+				-1.8
5,170,993	+				-2.4
5,170,993	+				+0.5
5,170,993	+				+0.7
5,170,993	+				-1.0
5,170,993	+				-4.2
5,170,993	+				-3.4
5,170,993	+				+0.4
5,170,994	-				+1.1
5,170,994	-				+1.7
5,170,994	-				-1.5
5,170,994	-				+0.9
5,170,994	-				+1.0
5,170,994	-				-1.7
5,171,174	+		Psyr_4320	0.11	-0.7
5,171,587	-		Psyr_4320	0.28	-2.3
5,171,587	-		Psyr_4320	0.28	+2.3
5,171,587	-		Psyr_4320	0.28	+1.4
5,171,587	-		Psyr_4320	0.28	-2.4
5,171,587	-		Psyr_4320	0.28	-2.0
5,171,683	+		Psyr_4320	0.31	-2.6
5,171,683	+		Psyr_4320	0.31	-1.8
5,171,684	-		Psyr_4320	0.31	-0.1
5,172,250	+		Psyr_4320	0.54	+0.5
5,172,251	-		Psyr_4320	0.54	+0.1
5,172,585	-		Psyr_4320	0.67	-0.7
5,173,320	-				+0.9
5,173,320	-				+0.3
5,173,405	-				-1.4
5,173,449	+				+3.0
5,173,449	+				+1.4
5,173,450	-				-1.0
5,173,450	-				-2.4
5,173,450	-				+1.0
5,173,450	-				+0.3
5,173,482	+				-2.2
5,173,482	+				+0.7
5,173,514	+				-1.3
5,173,514	+				+0.6
5,173,569	+				-0.6
5,173,569	+				+0.4
5,173,569	+				-1.5
5,173,569	+				+2.2
5,173,570	-				-1.0
5,173,570	-				-0.7
5,173,573	+				+1.0
5,173,573	+				-0.2
5,173,574	-				+0.6
5,173,574	-				+1.6
5,173,574	-				+1.6
5,173,574	-				+0.6
5,173,574	-				+0.9
5,173,584	-				-0.9
5,173,595	-				-1.6
5,173,595	-				+1.0
5,173,595	-				-0.6
5,173,595	-				-2.6
5,173,613	-				-1.5
5,173,613	-				-3.3
5,173,641	-				+2.6
5,173,641	-				-1.3
5,173,751	+		Psyr_4321	0.19	-0.6
5,173,751	+		Psyr_4321	0.19	+0.3
5,173,751	+		Psyr_4321	0.19	+0.1
5,173,751	+		Psyr_4321	0.19	-1.6
5,173,752	-		Psyr_4321	0.19	-1.1
5,173,752	-		Psyr_4321	0.19	+0.1
5,173,752	-		Psyr_4321	0.19	-1.0
5,173,796	+		Psyr_4321	0.24	+2.2
5,173,797	-		Psyr_4321	0.24	-1.7
5,173,797	-		Psyr_4321	0.24	-1.8
5,173,920	+		Psyr_4321	0.37	-2.9
5,173,920	+		Psyr_4321	0.37	-1.1
5,173,920	+		Psyr_4321	0.37	-0.6
5,173,920	+		Psyr_4321	0.37	-1.4
5,173,920	+		Psyr_4321	0.37	-2.6
5,173,920	+		Psyr_4321	0.37	+0.6
5,173,921	-		Psyr_4321	0.38	+0.4
5,173,921	-		Psyr_4321	0.38	+1.0
5,173,924	+		Psyr_4321	0.38	-0.7
5,173,924	+		Psyr_4321	0.38	-2.1
5,173,924	+		Psyr_4321	0.38	+3.1
5,173,924	+		Psyr_4321	0.38	-0.1
5,173,924	+		Psyr_4321	0.38	+1.6
5,173,924	+		Psyr_4321	0.38	-2.3
5,173,925	-		Psyr_4321	0.38	+0.7
5,173,925	-		Psyr_4321	0.38	+0.8
5,173,925	-		Psyr_4321	0.38	-1.1
5,173,925	-		Psyr_4321	0.38	+0.5
5,173,925	-		Psyr_4321	0.38	+0.2
5,173,925	-		Psyr_4321	0.38	+1.9
5,173,925	-		Psyr_4321	0.38	+0.6
5,173,925	-		Psyr_4321	0.38	-0.7
5,173,925	-		Psyr_4321	0.38	-1.7
5,173,925	-		Psyr_4321	0.38	+2.0
5,173,925	-		Psyr_4321	0.38	-0.3
5,173,956	+		Psyr_4321	0.41	-1.4
5,173,956	+		Psyr_4321	0.41	-0.6
5,173,956	+		Psyr_4321	0.41	-1.0
5,173,956	+		Psyr_4321	0.41	-2.4
5,173,957	-		Psyr_4321	0.42	+2.1
5,173,957	-		Psyr_4321	0.42	-0.3
5,173,993	+		Psyr_4321	0.46	-0.1
5,173,993	+		Psyr_4321	0.46	+0.6
5,173,993	+		Psyr_4321	0.46	-1.3
5,173,994	-		Psyr_4321	0.46	-2.7
5,173,994	-		Psyr_4321	0.46	+0.0
5,173,994	-		Psyr_4321	0.46	-1.9
5,173,994	-		Psyr_4321	0.46	+0.6
5,174,029	+		Psyr_4321	0.50	-3.6
5,174,030	-		Psyr_4321	0.50	-1.0
5,174,030	-		Psyr_4321	0.50	+0.9
5,174,030	-		Psyr_4321	0.50	-1.9
5,174,030	-		Psyr_4321	0.50	+0.3
5,174,104	-		Psyr_4321	0.58	+1.6
5,174,105	+		Psyr_4321	0.58	-0.9
5,174,105	+		Psyr_4321	0.58	-2.0
5,174,106	-		Psyr_4321	0.58	-0.5
5,174,108	+		Psyr_4321	0.58	-0.2
5,174,109	-		Psyr_4321	0.58	+0.4
5,174,109	-		Psyr_4321	0.58	-0.3
5,174,109	-		Psyr_4321	0.58	+0.1
5,174,109	-		Psyr_4321	0.58	+1.1
5,174,109	-		Psyr_4321	0.58	-1.0
5,174,109	-		Psyr_4321	0.58	-0.1
5,174,109	-		Psyr_4321	0.58	+1.2
5,174,112	-		Psyr_4321	0.59	-3.6
5,174,187	+		Psyr_4321	0.67	+0.0
5,174,188	-		Psyr_4321	0.67	+0.8
5,174,277	+		Psyr_4321	0.77	+2.2
5,174,277	+		Psyr_4321	0.77	-0.6
5,174,278	-		Psyr_4321	0.77	+0.8
5,174,278	-		Psyr_4321	0.77	-1.6
5,174,282	+		Psyr_4321	0.78	-2.3
5,174,299	+		Psyr_4321	0.79	+0.5
5,174,347	+		Psyr_4321	0.85	-1.1
5,174,348	-		Psyr_4321	0.85	-0.2
5,174,393	-		Psyr_4321	0.90	+0.6