Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0511

Experiment: apoplastic, chopping recovery; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0509 and Psyr_0510 are separated by 32 nucleotidesPsyr_0510 and Psyr_0511 are separated by 26 nucleotidesPsyr_0511 and Psyr_0512 are separated by 7 nucleotidesPsyr_0512 and Psyr_0513 are separated by 226 nucleotides Psyr_0509: Psyr_0509 - PAS:GGDEF, at 564,626 to 566,785 _0509 Psyr_0510: Psyr_0510 - conserved hypothetical protein, at 566,818 to 567,342 _0510 Psyr_0511: Psyr_0511 - conserved hypothetical protein, at 567,369 to 567,665 _0511 Psyr_0512: Psyr_0512 - GCN5-related N-acetyltransferase, at 567,673 to 568,131 _0512 Psyr_0513: Psyr_0513 - amino acid ABC transporter substrate-binding protein, PAAT family, at 568,358 to 569,113 _0513 Position (kb) 567 568Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 566.545 kb on + strand, within Psyr_0509at 566.546 kb on - strand, within Psyr_0509at 566.585 kb on - strandat 566.652 kb on - strandat 566.652 kb on - strandat 566.783 kb on + strandat 566.784 kb on - strandat 566.784 kb on - strandat 566.848 kb on + strandat 566.848 kb on + strandat 566.849 kb on - strandat 566.849 kb on - strandat 566.849 kb on - strandat 566.921 kb on - strand, within Psyr_0510at 566.975 kb on - strand, within Psyr_0510at 566.975 kb on - strand, within Psyr_0510at 567.239 kb on - strand, within Psyr_0510at 567.298 kb on + strandat 567.299 kb on - strandat 567.308 kb on - strandat 567.411 kb on + strand, within Psyr_0511at 567.411 kb on + strand, within Psyr_0511at 567.411 kb on + strand, within Psyr_0511at 567.411 kb on + strand, within Psyr_0511at 567.412 kb on - strand, within Psyr_0511at 567.412 kb on - strand, within Psyr_0511at 567.421 kb on - strand, within Psyr_0511at 567.421 kb on - strand, within Psyr_0511at 567.503 kb on + strand, within Psyr_0511at 567.504 kb on - strand, within Psyr_0511at 567.504 kb on - strand, within Psyr_0511at 567.699 kb on + strandat 567.758 kb on + strand, within Psyr_0512at 567.759 kb on - strand, within Psyr_0512at 567.761 kb on + strand, within Psyr_0512at 567.761 kb on + strand, within Psyr_0512at 567.762 kb on - strand, within Psyr_0512at 567.762 kb on - strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 568.023 kb on - strand, within Psyr_0512at 568.076 kb on + strand, within Psyr_0512at 568.076 kb on + strand, within Psyr_0512at 568.077 kb on - strand, within Psyr_0512at 568.077 kb on - strand, within Psyr_0512at 568.077 kb on - strand, within Psyr_0512at 568.125 kb on + strandat 568.166 kb on + strandat 568.167 kb on - strandat 568.207 kb on + strandat 568.208 kb on - strandat 568.208 kb on - strandat 568.251 kb on + strandat 568.251 kb on + strandat 568.275 kb on + strandat 568.275 kb on + strandat 568.275 kb on + strandat 568.276 kb on - strandat 568.276 kb on - strandat 568.276 kb on - strandat 568.317 kb on - strandat 568.544 kb on + strand, within Psyr_0513at 568.544 kb on + strand, within Psyr_0513at 568.544 kb on + strand, within Psyr_0513at 568.544 kb on + strand, within Psyr_0513at 568.544 kb on + strand, within Psyr_0513at 568.545 kb on - strand, within Psyr_0513at 568.545 kb on - strand, within Psyr_0513at 568.545 kb on - strand, within Psyr_0513at 568.545 kb on - strand, within Psyr_0513at 568.545 kb on - strand, within Psyr_0513at 568.661 kb on + strand, within Psyr_0513at 568.661 kb on + strand, within Psyr_0513at 568.661 kb on + strand, within Psyr_0513at 568.662 kb on - strand, within Psyr_0513

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean
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566,545 + Psyr_0509 0.89 +1.3
566,546 - Psyr_0509 0.89 +0.1
566,585 - -2.6
566,652 - +1.0
566,652 - -2.5
566,783 + -0.4
566,784 - +2.0
566,784 - -0.7
566,848 + +0.5
566,848 + -0.9
566,849 - +0.3
566,849 - -0.6
566,849 - +1.4
566,921 - Psyr_0510 0.20 +0.2
566,975 - Psyr_0510 0.30 +0.7
566,975 - Psyr_0510 0.30 -0.2
567,239 - Psyr_0510 0.80 +1.8
567,298 + +0.3
567,299 - -1.5
567,308 - -1.0
567,411 + Psyr_0511 0.14 +1.7
567,411 + Psyr_0511 0.14 +0.4
567,411 + Psyr_0511 0.14 -1.1
567,411 + Psyr_0511 0.14 +1.5
567,412 - Psyr_0511 0.14 -0.6
567,412 - Psyr_0511 0.14 +0.7
567,421 - Psyr_0511 0.18 -0.5
567,421 - Psyr_0511 0.18 -1.5
567,503 + Psyr_0511 0.45 -0.1
567,504 - Psyr_0511 0.45 -0.0
567,504 - Psyr_0511 0.45 -0.1
567,699 + -0.5
567,758 + Psyr_0512 0.19 -2.8
567,759 - Psyr_0512 0.19 -2.1
567,761 + Psyr_0512 0.19 -0.1
567,761 + Psyr_0512 0.19 -1.8
567,762 - Psyr_0512 0.19 -2.5
567,762 - Psyr_0512 0.19 +0.5
567,791 + Psyr_0512 0.26 -0.5
567,791 + Psyr_0512 0.26 -0.2
567,791 + Psyr_0512 0.26 -2.1
567,791 + Psyr_0512 0.26 -0.3
567,791 + Psyr_0512 0.26 -0.5
567,791 + Psyr_0512 0.26 +0.2
567,791 + Psyr_0512 0.26 -0.1
567,792 - Psyr_0512 0.26 +0.0
567,792 - Psyr_0512 0.26 -0.5
567,792 - Psyr_0512 0.26 +1.1
567,792 - Psyr_0512 0.26 +0.4
567,792 - Psyr_0512 0.26 +1.7
567,792 - Psyr_0512 0.26 -3.3
567,792 - Psyr_0512 0.26 +0.5
567,792 - Psyr_0512 0.26 +1.4
568,023 - Psyr_0512 0.76 -1.0
568,076 + Psyr_0512 0.88 +0.9
568,076 + Psyr_0512 0.88 +0.0
568,077 - Psyr_0512 0.88 -1.9
568,077 - Psyr_0512 0.88 +0.8
568,077 - Psyr_0512 0.88 -0.4
568,125 + +3.0
568,166 + -0.4
568,167 - -0.5
568,207 + +0.4
568,208 - +1.2
568,208 - +0.1
568,251 + +1.1
568,251 + -0.1
568,275 + -0.8
568,275 + -0.0
568,275 + -0.9
568,276 - -0.1
568,276 - +0.3
568,276 - -0.9
568,317 - -0.4
568,544 + Psyr_0513 0.25 +2.0
568,544 + Psyr_0513 0.25 +0.3
568,544 + Psyr_0513 0.25 -0.8
568,544 + Psyr_0513 0.25 +0.6
568,544 + Psyr_0513 0.25 -0.6
568,545 - Psyr_0513 0.25 +0.3
568,545 - Psyr_0513 0.25 +3.9
568,545 - Psyr_0513 0.25 -0.9
568,545 - Psyr_0513 0.25 +1.1
568,545 - Psyr_0513 0.25 -1.2
568,661 + Psyr_0513 0.40 +1.8
568,661 + Psyr_0513 0.40 +0.1
568,661 + Psyr_0513 0.40 +0.2
568,662 - Psyr_0513 0.40 -0.1

Or see this region's nucleotide sequence