Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0139

Experiment: apoplastic, chopping recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, chopping recovery; Green bean
148,461	+		Psyr_0138	0.69	-1.2
148,462	-		Psyr_0138	0.69	-3.4
148,485	-		Psyr_0138	0.70	+0.9
148,495	-		Psyr_0138	0.70	-1.4
148,497	+		Psyr_0138	0.70	-2.7
148,497	+		Psyr_0138	0.70	-0.9
148,497	+		Psyr_0138	0.70	+0.6
148,498	-		Psyr_0138	0.70	-0.5
148,498	-		Psyr_0138	0.70	+1.2
148,498	-		Psyr_0138	0.70	-2.5
148,498	-		Psyr_0138	0.70	-0.6
148,498	-		Psyr_0138	0.70	+1.6
148,498	-		Psyr_0138	0.70	-1.4
148,498	-		Psyr_0138	0.70	-1.5
148,498	-		Psyr_0138	0.70	-0.5
148,498	-		Psyr_0138	0.70	-0.3
148,498	-		Psyr_0138	0.70	+2.9
148,498	-		Psyr_0138	0.70	-0.6
148,644	+		Psyr_0138	0.75	+0.6
148,645	-		Psyr_0138	0.75	+0.2
148,749	-		Psyr_0138	0.79	-0.3
148,849	+		Psyr_0138	0.83	+1.4
148,850	-		Psyr_0138	0.83	-0.0
148,914	+		Psyr_0138	0.85	-0.5
148,914	+		Psyr_0138	0.85	-1.8
148,914	+		Psyr_0138	0.85	+0.9
148,914	+		Psyr_0138	0.85	-1.2
148,914	+		Psyr_0138	0.85	+1.1
148,914	+		Psyr_0138	0.85	-0.2
148,914	+		Psyr_0138	0.85	-1.0
148,914	+		Psyr_0138	0.85	+1.1
148,914	+		Psyr_0138	0.85	+0.7
148,915	-		Psyr_0138	0.85	-0.2
148,915	-		Psyr_0138	0.85	+0.2
148,915	-		Psyr_0138	0.85	+0.9
148,915	-		Psyr_0138	0.85	-1.4
148,915	-		Psyr_0138	0.85	-1.7
148,915	-		Psyr_0138	0.85	-0.1
148,915	-		Psyr_0138	0.85	-0.5
148,915	-		Psyr_0138	0.85	+0.4
148,915	-		Psyr_0138	0.85	-2.7
148,956	+		Psyr_0138	0.87	+0.2
148,956	+		Psyr_0138	0.87	-2.1
148,957	-		Psyr_0138	0.87	-1.2
148,957	-		Psyr_0138	0.87	+1.1
149,025	-		Psyr_0138	0.89	-1.3
149,089	-				-0.4
149,122	-				-1.8
149,150	+				-0.5
149,150	+				+1.0
149,150	+				+0.2
149,192	+				+0.7
149,192	+				+2.9
149,192	+				-0.6
149,192	+				-0.5
149,193	-				+0.2
149,229	+				+0.3
149,230	-				+1.1
149,440	-				+0.3
149,604	+				-0.2
149,604	+				-0.4
149,604	+				+1.9
149,604	+				-2.1
149,605	-				+0.4
149,674	-		Psyr_0139	0.12	+0.6
149,674	-		Psyr_0139	0.12	-2.1
149,674	-		Psyr_0139	0.12	-1.5
149,674	-		Psyr_0139	0.12	-0.9
149,685	+		Psyr_0139	0.12	-1.4
149,730	+		Psyr_0139	0.14	+0.4
149,731	-		Psyr_0139	0.15	+1.5
149,731	-		Psyr_0139	0.15	+0.1
149,731	-		Psyr_0139	0.15	+1.4
149,731	-		Psyr_0139	0.15	+1.6
149,767	-		Psyr_0139	0.16	+0.2
149,775	+		Psyr_0139	0.17	+1.6
149,893	-		Psyr_0139	0.23	+1.4
149,893	-		Psyr_0139	0.23	+1.4
150,219	+		Psyr_0139	0.40	-0.2
150,219	+		Psyr_0139	0.40	+0.4
150,219	+		Psyr_0139	0.40	-2.8
150,220	-		Psyr_0139	0.40	-0.9
150,246	+		Psyr_0139	0.42	+0.3
150,246	+		Psyr_0139	0.42	-1.3
150,246	+		Psyr_0139	0.42	+0.1
150,246	+		Psyr_0139	0.42	-0.5
150,246	+		Psyr_0139	0.42	+0.4
150,246	+		Psyr_0139	0.42	+0.7
150,246	+		Psyr_0139	0.42	-1.2
150,246	+		Psyr_0139	0.42	+1.2
150,247	-		Psyr_0139	0.42	-1.2
150,247	-		Psyr_0139	0.42	+1.2
150,247	-		Psyr_0139	0.42	+0.1
150,247	-		Psyr_0139	0.42	+0.4
150,247	-		Psyr_0139	0.42	+0.8
150,247	-		Psyr_0139	0.42	-1.7
150,247	-		Psyr_0139	0.42	+1.1
150,247	-		Psyr_0139	0.42	-2.5
150,247	-		Psyr_0139	0.42	-1.2
150,247	-		Psyr_0139	0.42	-0.3
150,247	-		Psyr_0139	0.42	+0.0
150,247	-		Psyr_0139	0.42	+3.7
150,250	-		Psyr_0139	0.42	+2.1
150,250	-		Psyr_0139	0.42	-0.3
150,300	+		Psyr_0139	0.45	-1.4
150,301	-		Psyr_0139	0.45	-0.8
150,301	-		Psyr_0139	0.45	-0.9
150,340	-		Psyr_0139	0.47	-0.8
150,526	-		Psyr_0139	0.57	-1.2
150,526	-		Psyr_0139	0.57	+0.2
150,543	+		Psyr_0139	0.58	+2.5
150,544	-		Psyr_0139	0.58	-1.9
150,544	-		Psyr_0139	0.58	-2.1
150,682	-		Psyr_0139	0.65	+1.7
150,894	+		Psyr_0139	0.76	-0.9
150,894	+		Psyr_0139	0.76	-0.5
150,895	-		Psyr_0139	0.76	+0.1
150,895	-		Psyr_0139	0.76	+1.7
150,895	-		Psyr_0139	0.76	-0.9
150,895	-		Psyr_0139	0.76	-0.7
150,921	+		Psyr_0139	0.78	+1.5
150,987	+		Psyr_0139	0.81	-2.5
150,988	-		Psyr_0139	0.81	-0.2
150,988	-		Psyr_0139	0.81	+0.9
150,988	-		Psyr_0139	0.81	+0.1
150,988	-		Psyr_0139	0.81	+3.0
150,988	-		Psyr_0139	0.81	-0.3
150,988	-		Psyr_0139	0.81	+0.8
150,997	-		Psyr_0139	0.82	+0.5
151,095	-		Psyr_0139	0.87	+2.2
151,117	-		Psyr_0139	0.88	-2.1
151,153	-				+1.4
151,153	-				-0.0
151,155	+				-1.3
151,155	+				-1.9
151,155	+				-0.3
151,155	+				-0.8
151,155	+				-2.6
151,155	+				-1.1
151,155	+				-0.4
151,155	+				-3.4
151,155	+				+0.4
151,155	+				-2.8
151,155	+				-1.5
151,155	+				-1.2
151,155	+				+1.7
151,155	+				-1.4
151,155	+				-0.5
151,155	+				-0.8
151,155	+				+0.3
151,155	+				-0.5
151,155	+				-0.3
151,155	+				-0.2
151,155	+				-0.1
151,155	+				-0.0
151,156	-				-3.2
151,156	-				-0.4
151,156	-				+1.1
151,156	-				-0.9
151,156	-				-0.5
151,156	-				-1.7
151,156	-				+0.3
151,156	-				-0.1
151,156	-				+0.2
151,156	-				+0.0
151,156	-				+0.8
151,156	-				+1.3
151,156	-				+0.8
151,156	-				-1.9
151,156	-				-1.9
151,156	-				+0.3
151,156	-				+0.5
151,156	-				-0.2
151,156	-				-2.5
151,170	+				-2.2
151,170	+				-2.6
151,170	+				-0.8
151,170	+				-0.1
151,170	+				-1.4
151,170	+				+1.5
151,170	+				+0.1
151,171	-				-2.6
151,171	-				+2.0
151,171	-				-0.7
151,171	-				-1.2
151,171	-				+0.4
151,171	-				+0.3
151,171	-				-1.2
151,171	-				-3.8
151,173	+				-3.2
151,174	-				-2.7
151,174	-				-0.7
151,236	+				-1.7
151,236	+				+0.7
151,237	-				+0.9
151,237	-				-1.2
151,237	-				+0.8
151,237	-				+2.7
151,237	-				-1.5
151,336	-				-0.4
151,351	+				+0.9
151,351	+				+0.4
151,352	-				+0.6
151,352	-				-1.9
151,352	-				-2.1
151,352	-				+0.5
151,352	-				+2.1
151,352	-				+0.3
151,586	-		Psyr_0140	0.23	+2.8
151,586	-		Psyr_0140	0.23	+1.1
151,586	-		Psyr_0140	0.23	+0.3
151,636	+		Psyr_0140	0.28	+1.3
151,636	+		Psyr_0140	0.28	+0.3
151,637	-		Psyr_0140	0.28	+0.7
151,637	-		Psyr_0140	0.28	+0.6
151,751	-		Psyr_0140	0.38	+0.9
151,900	+		Psyr_0140	0.52	+2.7
151,900	+		Psyr_0140	0.52	+0.7
151,900	+		Psyr_0140	0.52	-1.2
151,901	-		Psyr_0140	0.52	-2.0
151,901	-		Psyr_0140	0.52	-1.2
151,901	-		Psyr_0140	0.52	-0.5
151,978	+		Psyr_0140	0.60	+0.3
151,978	+		Psyr_0140	0.60	-0.1
151,978	+		Psyr_0140	0.60	-0.8
151,979	-		Psyr_0140	0.60	-0.6
152,083	+		Psyr_0140	0.69	+4.0
152,083	+		Psyr_0140	0.69	+0.8
152,083	+		Psyr_0140	0.69	-2.1
152,083	+		Psyr_0140	0.69	-0.5
152,083	+		Psyr_0140	0.69	-0.9
152,083	+		Psyr_0140	0.69	+1.0
152,084	-		Psyr_0140	0.69	-4.1
152,084	-		Psyr_0140	0.69	-0.5
152,256	+		Psyr_0140	0.86	-1.8
152,257	-		Psyr_0140	0.86	+1.9
152,263	+		Psyr_0140	0.86	+2.0