Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_854 and PfGW456L13_855 are separated by 463 nucleotides PfGW456L13_855 and PfGW456L13_856 are separated by 138 nucleotides
PfGW456L13_854 - Argininosuccinate lyase (EC 4.3.2.1), at 959,828 to 961,222
_854
PfGW456L13_855 - Autolysis response regulater LytR, at 961,686 to 962,432
_855
PfGW456L13_856 - Porphobilinogen deaminase (EC 2.5.1.61), at 962,571 to 963,512
_856
Position (kb) 961
962
963 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 961.117 kb on - strand at 961.235 kb on - strand at 961.247 kb on + strand at 961.247 kb on + strand at 961.248 kb on - strand at 961.248 kb on - strand at 961.248 kb on - strand at 961.277 kb on + strand at 961.277 kb on + strand at 961.277 kb on + strand at 961.278 kb on - strand at 961.278 kb on - strand at 961.278 kb on - strand at 961.278 kb on - strand at 961.278 kb on - strand at 961.278 kb on - strand at 961.314 kb on + strand at 961.314 kb on + strand at 961.315 kb on - strand at 961.315 kb on - strand at 961.378 kb on - strand at 961.378 kb on - strand at 961.414 kb on + strand at 961.414 kb on + strand at 961.414 kb on + strand at 961.415 kb on - strand at 961.427 kb on + strand at 961.428 kb on - strand at 961.428 kb on - strand at 961.428 kb on - strand at 961.428 kb on - strand at 961.428 kb on - strand at 961.462 kb on + strand at 961.462 kb on + strand at 961.462 kb on + strand at 961.462 kb on + strand at 961.462 kb on + strand at 961.462 kb on + strand at 961.462 kb on + strand at 961.462 kb on + strand at 961.462 kb on + strand at 961.463 kb on - strand at 961.463 kb on - strand at 961.463 kb on - strand at 961.463 kb on - strand at 961.463 kb on - strand at 961.464 kb on + strand at 961.464 kb on + strand at 961.464 kb on + strand at 961.464 kb on + strand at 961.464 kb on + strand at 961.465 kb on - strand at 961.465 kb on - strand at 961.465 kb on - strand at 961.465 kb on - strand at 961.465 kb on - strand at 961.484 kb on + strand at 961.484 kb on + strand at 961.484 kb on + strand at 961.485 kb on - strand at 961.485 kb on - strand at 961.485 kb on - strand at 961.485 kb on - strand at 961.485 kb on - strand at 961.485 kb on - strand at 961.485 kb on - strand at 961.492 kb on - strand at 961.605 kb on + strand at 961.605 kb on + strand at 961.605 kb on + strand at 961.606 kb on - strand at 961.643 kb on + strand at 961.643 kb on + strand at 961.643 kb on + strand at 961.643 kb on + strand at 961.643 kb on + strand at 961.644 kb on - strand at 961.644 kb on - strand at 961.649 kb on - strand at 961.685 kb on + strand at 961.685 kb on + strand at 961.685 kb on + strand at 961.685 kb on + strand at 961.686 kb on - strand at 961.686 kb on - strand at 961.761 kb on + strand, within PfGW456L13_855 at 961.761 kb on + strand, within PfGW456L13_855 at 961.761 kb on + strand, within PfGW456L13_855 at 961.762 kb on - strand, within PfGW456L13_855 at 961.762 kb on - strand, within PfGW456L13_855 at 961.778 kb on + strand, within PfGW456L13_855 at 961.779 kb on - strand, within PfGW456L13_855 at 961.779 kb on - strand, within PfGW456L13_855 at 961.833 kb on - strand, within PfGW456L13_855 at 961.961 kb on - strand, within PfGW456L13_855 at 961.980 kb on + strand, within PfGW456L13_855 at 961.980 kb on + strand, within PfGW456L13_855 at 961.981 kb on - strand, within PfGW456L13_855 at 961.981 kb on - strand, within PfGW456L13_855 at 961.981 kb on - strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.012 kb on - strand, within PfGW456L13_855 at 962.012 kb on - strand, within PfGW456L13_855 at 962.012 kb on - strand, within PfGW456L13_855 at 962.012 kb on - strand, within PfGW456L13_855 at 962.012 kb on - strand, within PfGW456L13_855 at 962.012 kb on - strand, within PfGW456L13_855 at 962.012 kb on - strand, within PfGW456L13_855 at 962.012 kb on - strand, within PfGW456L13_855 at 962.012 kb on - strand, within PfGW456L13_855 at 962.023 kb on + strand, within PfGW456L13_855 at 962.024 kb on - strand, within PfGW456L13_855 at 962.108 kb on + strand, within PfGW456L13_855 at 962.108 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.164 kb on - strand, within PfGW456L13_855 at 962.164 kb on - strand, within PfGW456L13_855 at 962.184 kb on + strand, within PfGW456L13_855 at 962.184 kb on + strand, within PfGW456L13_855 at 962.184 kb on + strand, within PfGW456L13_855 at 962.184 kb on + strand, within PfGW456L13_855 at 962.184 kb on + strand, within PfGW456L13_855 at 962.184 kb on + strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.273 kb on + strand, within PfGW456L13_855 at 962.273 kb on + strand, within PfGW456L13_855 at 962.273 kb on + strand, within PfGW456L13_855 at 962.274 kb on - strand, within PfGW456L13_855 at 962.274 kb on - strand, within PfGW456L13_855 at 962.274 kb on - strand, within PfGW456L13_855 at 962.306 kb on + strand, within PfGW456L13_855 at 962.407 kb on + strand at 962.430 kb on + strand at 962.496 kb on - strand at 962.496 kb on - strand at 962.496 kb on - strand at 962.498 kb on + strand at 962.498 kb on + strand at 962.506 kb on - strand at 962.528 kb on + strand at 962.528 kb on + strand at 962.529 kb on - strand at 962.529 kb on - strand at 962.529 kb on - strand at 962.529 kb on - strand at 962.529 kb on - strand at 962.529 kb on - strand at 962.529 kb on - strand at 962.535 kb on + strand at 962.536 kb on - strand at 962.536 kb on - strand at 962.536 kb on - strand at 962.547 kb on + strand at 962.547 kb on + strand at 962.547 kb on + strand at 962.547 kb on + strand at 962.547 kb on + strand at 962.547 kb on + strand at 962.551 kb on + strand at 962.558 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 961,117 - -1.3 961,235 - +0.3 961,247 + -2.8 961,247 + -3.5 961,248 - -0.2 961,248 - +0.3 961,248 - -0.7 961,277 + -0.0 961,277 + +0.4 961,277 + -1.0 961,278 - -0.0 961,278 - -0.4 961,278 - +0.6 961,278 - -0.4 961,278 - -0.1 961,278 - -0.4 961,314 + +0.5 961,314 + -0.5 961,315 - +0.3 961,315 - +0.7 961,378 - +0.6 961,378 - -0.2 961,414 + -0.6 961,414 + -1.2 961,414 + +0.5 961,415 - -0.6 961,427 + -0.2 961,428 - +0.0 961,428 - +0.4 961,428 - -1.0 961,428 - -0.1 961,428 - +0.2 961,462 + +0.3 961,462 + +0.2 961,462 + +0.5 961,462 + -0.6 961,462 + -0.5 961,462 + -1.0 961,462 + -0.4 961,462 + +0.6 961,462 + +0.2 961,463 - -0.1 961,463 - -0.1 961,463 - -0.2 961,463 - -0.2 961,463 - -1.0 961,464 + +1.1 961,464 + +0.8 961,464 + -0.1 961,464 + -1.4 961,464 + +0.1 961,465 - +0.4 961,465 - -0.7 961,465 - -0.2 961,465 - -0.3 961,465 - -0.0 961,484 + +0.0 961,484 + -0.2 961,484 + -0.4 961,485 - +0.3 961,485 - +1.1 961,485 - +0.4 961,485 - +0.3 961,485 - +0.4 961,485 - +0.2 961,485 - +0.7 961,492 - -0.4 961,605 + -0.6 961,605 + +0.1 961,605 + -1.0 961,606 - +0.5 961,643 + -0.5 961,643 + -0.5 961,643 + +0.8 961,643 + -0.2 961,643 + +0.8 961,644 - +0.3 961,644 - +0.2 961,649 - -0.2 961,685 + -0.2 961,685 + -0.6 961,685 + -0.3 961,685 + +0.3 961,686 - -0.6 961,686 - -0.9 961,761 + PfGW456L13_855 0.10 +0.2 961,761 + PfGW456L13_855 0.10 +0.3 961,761 + PfGW456L13_855 0.10 +0.3 961,762 - PfGW456L13_855 0.10 +0.3 961,762 - PfGW456L13_855 0.10 -1.4 961,778 + PfGW456L13_855 0.12 +0.3 961,779 - PfGW456L13_855 0.12 -0.1 961,779 - PfGW456L13_855 0.12 -0.5 961,833 - PfGW456L13_855 0.20 +0.8 961,961 - PfGW456L13_855 0.37 -0.5 961,980 + PfGW456L13_855 0.39 -0.5 961,980 + PfGW456L13_855 0.39 +0.5 961,981 - PfGW456L13_855 0.39 -0.5 961,981 - PfGW456L13_855 0.39 +0.6 961,981 - PfGW456L13_855 0.39 +0.5 962,011 + PfGW456L13_855 0.44 -0.6 962,011 + PfGW456L13_855 0.44 +0.1 962,011 + PfGW456L13_855 0.44 -0.4 962,011 + PfGW456L13_855 0.44 -1.3 962,011 + PfGW456L13_855 0.44 +0.2 962,011 + PfGW456L13_855 0.44 -0.5 962,011 + PfGW456L13_855 0.44 -0.0 962,011 + PfGW456L13_855 0.44 +0.0 962,011 + PfGW456L13_855 0.44 +0.2 962,011 + PfGW456L13_855 0.44 +0.8 962,011 + PfGW456L13_855 0.44 -0.4 962,012 - PfGW456L13_855 0.44 -0.9 962,012 - PfGW456L13_855 0.44 -0.0 962,012 - PfGW456L13_855 0.44 +0.2 962,012 - PfGW456L13_855 0.44 +0.4 962,012 - PfGW456L13_855 0.44 -0.8 962,012 - PfGW456L13_855 0.44 +1.8 962,012 - PfGW456L13_855 0.44 +1.0 962,012 - PfGW456L13_855 0.44 +0.0 962,012 - PfGW456L13_855 0.44 -0.2 962,023 + PfGW456L13_855 0.45 +0.4 962,024 - PfGW456L13_855 0.45 -0.3 962,108 + PfGW456L13_855 0.56 +0.9 962,108 + PfGW456L13_855 0.56 +1.0 962,163 + PfGW456L13_855 0.64 -1.5 962,163 + PfGW456L13_855 0.64 -0.7 962,163 + PfGW456L13_855 0.64 -1.1 962,163 + PfGW456L13_855 0.64 +0.3 962,163 + PfGW456L13_855 0.64 +0.2 962,163 + PfGW456L13_855 0.64 -0.5 962,163 + PfGW456L13_855 0.64 -1.0 962,163 + PfGW456L13_855 0.64 -0.9 962,163 + PfGW456L13_855 0.64 +0.8 962,163 + PfGW456L13_855 0.64 +0.0 962,164 - PfGW456L13_855 0.64 +0.1 962,164 - PfGW456L13_855 0.64 +0.6 962,184 + PfGW456L13_855 0.67 +1.6 962,184 + PfGW456L13_855 0.67 -0.6 962,184 + PfGW456L13_855 0.67 +0.6 962,184 + PfGW456L13_855 0.67 -0.4 962,184 + PfGW456L13_855 0.67 -0.4 962,184 + PfGW456L13_855 0.67 +0.6 962,185 - PfGW456L13_855 0.67 +0.6 962,185 - PfGW456L13_855 0.67 +1.4 962,185 - PfGW456L13_855 0.67 +0.1 962,185 - PfGW456L13_855 0.67 +0.4 962,185 - PfGW456L13_855 0.67 +0.9 962,185 - PfGW456L13_855 0.67 -0.1 962,185 - PfGW456L13_855 0.67 -0.3 962,185 - PfGW456L13_855 0.67 +0.3 962,185 - PfGW456L13_855 0.67 +0.2 962,185 - PfGW456L13_855 0.67 -0.3 962,185 - PfGW456L13_855 0.67 +0.0 962,185 - PfGW456L13_855 0.67 -0.2 962,185 - PfGW456L13_855 0.67 -0.1 962,185 - PfGW456L13_855 0.67 -0.8 962,185 - PfGW456L13_855 0.67 +0.3 962,185 - PfGW456L13_855 0.67 -1.0 962,273 + PfGW456L13_855 0.79 -0.5 962,273 + PfGW456L13_855 0.79 +0.8 962,273 + PfGW456L13_855 0.79 +0.3 962,274 - PfGW456L13_855 0.79 -0.3 962,274 - PfGW456L13_855 0.79 +0.7 962,274 - PfGW456L13_855 0.79 -0.5 962,306 + PfGW456L13_855 0.83 +0.0 962,407 + +0.2 962,430 + +0.4 962,496 - -2.0 962,496 - -2.3 962,496 - -0.5 962,498 + +1.0 962,498 + +0.1 962,506 - -1.4 962,528 + -0.5 962,528 + +0.2 962,529 - +0.0 962,529 - +0.4 962,529 - +0.2 962,529 - -0.9 962,529 - -0.4 962,529 - -0.5 962,529 - -0.1 962,535 + -0.0 962,536 - +0.2 962,536 - -0.4 962,536 - +0.2 962,547 + -0.3 962,547 + -0.0 962,547 + -1.7 962,547 + -0.1 962,547 + +0.3 962,547 + +0.2 962,551 + -1.0 962,558 + -1.3
Or see this region's nucleotide sequence