Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1186

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1185 and PfGW456L13_1186 are separated by 122 nucleotidesPfGW456L13_1186 and PfGW456L13_1187 are separated by 67 nucleotides PfGW456L13_1185 - sensory box/GGDEF domain/EAL domain protein, at 1,319,022 to 1,322,768 _1185 PfGW456L13_1186 - RNA polymerase sigma factor RpoD, at 1,322,891 to 1,324,738 _1186 PfGW456L13_1187 - DNA primase (EC 2.7.7.-), at 1,324,806 to 1,326,773 _1187 Position (kb) 1322 1323 1324 1325Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1321.957 kb on + strand, within PfGW456L13_1185at 1321.957 kb on + strand, within PfGW456L13_1185at 1321.957 kb on + strand, within PfGW456L13_1185at 1322.098 kb on - strand, within PfGW456L13_1185at 1322.122 kb on + strand, within PfGW456L13_1185at 1322.143 kb on + strand, within PfGW456L13_1185at 1322.143 kb on + strand, within PfGW456L13_1185at 1322.143 kb on + strand, within PfGW456L13_1185at 1322.143 kb on + strand, within PfGW456L13_1185at 1322.143 kb on + strand, within PfGW456L13_1185at 1322.143 kb on + strand, within PfGW456L13_1185at 1322.143 kb on + strand, within PfGW456L13_1185at 1322.143 kb on + strand, within PfGW456L13_1185at 1322.143 kb on + strand, within PfGW456L13_1185at 1322.143 kb on + strand, within PfGW456L13_1185at 1322.144 kb on - strand, within PfGW456L13_1185at 1322.144 kb on - strand, within PfGW456L13_1185at 1322.144 kb on - strand, within PfGW456L13_1185at 1322.144 kb on - strand, within PfGW456L13_1185at 1322.144 kb on - strand, within PfGW456L13_1185at 1322.144 kb on - strand, within PfGW456L13_1185at 1322.144 kb on - strand, within PfGW456L13_1185at 1322.144 kb on - strand, within PfGW456L13_1185at 1322.144 kb on - strand, within PfGW456L13_1185at 1322.144 kb on - strand, within PfGW456L13_1185at 1322.144 kb on - strand, within PfGW456L13_1185at 1322.144 kb on - strand, within PfGW456L13_1185at 1322.144 kb on - strand, within PfGW456L13_1185at 1322.144 kb on - strand, within PfGW456L13_1185at 1322.144 kb on - strand, within PfGW456L13_1185at 1322.144 kb on - strand, within PfGW456L13_1185at 1322.144 kb on - strand, within PfGW456L13_1185at 1322.144 kb on - strand, within PfGW456L13_1185at 1322.211 kb on + strand, within PfGW456L13_1185at 1322.212 kb on - strand, within PfGW456L13_1185at 1322.311 kb on + strand, within PfGW456L13_1185at 1322.312 kb on - strand, within PfGW456L13_1185at 1322.312 kb on - strand, within PfGW456L13_1185at 1322.312 kb on - strand, within PfGW456L13_1185at 1322.342 kb on - strand, within PfGW456L13_1185at 1322.357 kb on + strand, within PfGW456L13_1185at 1322.358 kb on - strand, within PfGW456L13_1185at 1322.358 kb on - strand, within PfGW456L13_1185at 1322.410 kb on + strandat 1322.410 kb on + strandat 1322.431 kb on + strandat 1322.431 kb on + strandat 1322.432 kb on - strandat 1322.489 kb on + strandat 1322.489 kb on + strandat 1322.490 kb on - strandat 1322.490 kb on - strandat 1322.572 kb on + strandat 1322.573 kb on - strandat 1322.678 kb on + strandat 1322.678 kb on + strandat 1322.678 kb on + strandat 1322.678 kb on + strandat 1322.678 kb on + strandat 1322.678 kb on + strandat 1322.678 kb on + strandat 1322.678 kb on + strandat 1322.678 kb on + strandat 1322.679 kb on - strandat 1322.679 kb on - strandat 1322.679 kb on - strandat 1322.679 kb on - strandat 1322.679 kb on - strandat 1322.679 kb on - strandat 1322.679 kb on - strandat 1322.679 kb on - strandat 1322.679 kb on - strandat 1322.768 kb on + strandat 1322.806 kb on + strandat 1322.806 kb on + strandat 1322.807 kb on - strandat 1322.844 kb on + strandat 1322.844 kb on + strandat 1322.844 kb on + strandat 1322.845 kb on - strandat 1322.845 kb on - strandat 1322.845 kb on - strandat 1322.851 kb on + strandat 1322.851 kb on + strandat 1322.851 kb on + strandat 1322.851 kb on + strandat 1322.851 kb on + strandat 1322.852 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,321,957 + PfGW456L13_1185 0.78 +0.3
1,321,957 + PfGW456L13_1185 0.78 -0.4
1,321,957 + PfGW456L13_1185 0.78 +0.4
1,322,098 - PfGW456L13_1185 0.82 -2.6
1,322,122 + PfGW456L13_1185 0.83 +0.2
1,322,143 + PfGW456L13_1185 0.83 -3.4
1,322,143 + PfGW456L13_1185 0.83 +0.2
1,322,143 + PfGW456L13_1185 0.83 +0.7
1,322,143 + PfGW456L13_1185 0.83 +1.1
1,322,143 + PfGW456L13_1185 0.83 +0.3
1,322,143 + PfGW456L13_1185 0.83 -0.0
1,322,143 + PfGW456L13_1185 0.83 +0.4
1,322,143 + PfGW456L13_1185 0.83 -0.0
1,322,143 + PfGW456L13_1185 0.83 +2.0
1,322,143 + PfGW456L13_1185 0.83 +0.1
1,322,144 - PfGW456L13_1185 0.83 +0.5
1,322,144 - PfGW456L13_1185 0.83 +0.3
1,322,144 - PfGW456L13_1185 0.83 -0.6
1,322,144 - PfGW456L13_1185 0.83 +0.5
1,322,144 - PfGW456L13_1185 0.83 +2.1
1,322,144 - PfGW456L13_1185 0.83 -1.0
1,322,144 - PfGW456L13_1185 0.83 -0.9
1,322,144 - PfGW456L13_1185 0.83 +0.2
1,322,144 - PfGW456L13_1185 0.83 +0.4
1,322,144 - PfGW456L13_1185 0.83 +1.8
1,322,144 - PfGW456L13_1185 0.83 -0.3
1,322,144 - PfGW456L13_1185 0.83 +0.4
1,322,144 - PfGW456L13_1185 0.83 +0.2
1,322,144 - PfGW456L13_1185 0.83 -0.0
1,322,144 - PfGW456L13_1185 0.83 +0.4
1,322,144 - PfGW456L13_1185 0.83 +0.3
1,322,144 - PfGW456L13_1185 0.83 +0.1
1,322,144 - PfGW456L13_1185 0.83 -0.1
1,322,211 + PfGW456L13_1185 0.85 +0.1
1,322,212 - PfGW456L13_1185 0.85 -0.4
1,322,311 + PfGW456L13_1185 0.88 -0.1
1,322,312 - PfGW456L13_1185 0.88 +1.3
1,322,312 - PfGW456L13_1185 0.88 +1.1
1,322,312 - PfGW456L13_1185 0.88 -0.2
1,322,342 - PfGW456L13_1185 0.89 +0.8
1,322,357 + PfGW456L13_1185 0.89 +0.4
1,322,358 - PfGW456L13_1185 0.89 -0.0
1,322,358 - PfGW456L13_1185 0.89 +0.6
1,322,410 + -1.1
1,322,410 + +0.9
1,322,431 + +0.3
1,322,431 + +0.2
1,322,432 - +0.6
1,322,489 + -0.0
1,322,489 + -0.7
1,322,490 - +0.1
1,322,490 - -0.3
1,322,572 + +1.3
1,322,573 - +1.5
1,322,678 + +0.3
1,322,678 + +0.4
1,322,678 + -0.7
1,322,678 + -0.1
1,322,678 + -0.5
1,322,678 + -1.0
1,322,678 + +0.9
1,322,678 + +0.6
1,322,678 + -0.7
1,322,679 - +0.6
1,322,679 - -0.0
1,322,679 - -0.9
1,322,679 - -0.3
1,322,679 - +0.3
1,322,679 - +0.8
1,322,679 - +0.2
1,322,679 - -0.9
1,322,679 - +0.3
1,322,768 + -1.4
1,322,806 + -0.3
1,322,806 + -0.3
1,322,807 - +0.1
1,322,844 + +0.6
1,322,844 + +0.9
1,322,844 + -0.0
1,322,845 - +1.7
1,322,845 - +0.9
1,322,845 - -0.6
1,322,851 + -1.0
1,322,851 + +0.2
1,322,851 + +0.1
1,322,851 + -0.3
1,322,851 + +0.3
1,322,852 - -0.1

Or see this region's nucleotide sequence