Strain Fitness in Pseudomonas simiae WCS417 around PS417_21640

Experiment: m-Inositol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_21630 and PS417_21635 are separated by 340 nucleotidesPS417_21635 and PS417_21640 are separated by 72 nucleotidesPS417_21640 and PS417_21645 are separated by 108 nucleotidesPS417_21645 and PS417_21650 are separated by 62 nucleotidesPS417_21650 and PS417_21655 are separated by 174 nucleotides PS417_21630: PS417_21630 - magnesium transporter, at 4,692,418 to 4,693,860 _21630 PS417_21635: PS417_21635 - tRNA-Arg, at 4,694,201 to 4,694,277 _21635 PS417_21640: PS417_21640 - tRNA-Arg, at 4,694,350 to 4,694,426 _21640 PS417_21645: PS417_21645 - tRNA-Ser, at 4,694,535 to 4,694,625 _21645 PS417_21650: PS417_21650 - carbon storage regulator, at 4,694,688 to 4,694,876 _21650 PS417_21655: PS417_21655 - aspartate kinase, at 4,695,051 to 4,696,292 _21655 Position (kb) 4694 4695Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4693.561 kb on + strand, within PS417_21630at 4693.761 kb on + strandat 4693.843 kb on + strandat 4693.844 kb on - strandat 4693.849 kb on + strandat 4693.849 kb on + strandat 4693.849 kb on + strandat 4693.849 kb on + strandat 4693.849 kb on + strandat 4693.860 kb on + strandat 4693.966 kb on + strandat 4693.966 kb on + strandat 4694.004 kb on + strandat 4694.004 kb on + strandat 4694.005 kb on - strandat 4694.084 kb on + strandat 4694.084 kb on + strandat 4694.084 kb on + strandat 4694.200 kb on - strandat 4694.200 kb on - strandat 4694.200 kb on - strandat 4694.252 kb on - strand, within PS417_21635at 4694.877 kb on - strandat 4694.939 kb on - strandat 4694.955 kb on - strandat 4694.967 kb on + strandat 4694.967 kb on + strandat 4694.967 kb on + strandat 4694.968 kb on - strandat 4694.968 kb on - strandat 4694.972 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
remove
4,693,561 + PS417_21630 0.79 -2.3
4,693,761 + -0.4
4,693,843 + -0.5
4,693,844 - -3.1
4,693,849 + -0.9
4,693,849 + -0.3
4,693,849 + -0.8
4,693,849 + -0.4
4,693,849 + -0.6
4,693,860 + -0.5
4,693,966 + -0.1
4,693,966 + -1.8
4,694,004 + -0.0
4,694,004 + +0.3
4,694,005 - -0.0
4,694,084 + -0.0
4,694,084 + -0.3
4,694,084 + -0.2
4,694,200 - +0.1
4,694,200 - -0.3
4,694,200 - -1.0
4,694,252 - PS417_21635 0.66 +0.1
4,694,877 - -0.3
4,694,939 - -0.7
4,694,955 - -0.2
4,694,967 + -0.8
4,694,967 + +0.1
4,694,967 + +0.1
4,694,968 - +1.8
4,694,968 - -1.2
4,694,972 - -0.6

Or see this region's nucleotide sequence