Strain Fitness in Pseudomonas simiae WCS417 around PS417_13860

Experiment: m-Inositol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_13855 and PS417_13860 are separated by 12 nucleotidesPS417_13860 and PS417_13865 are separated by 200 nucleotides PS417_13855: PS417_13855 - acetyl-CoA acetyltransferase, at 3,043,587 to 3,044,771 _13855 PS417_13860: PS417_13860 - 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 3,044,784 to 3,045,551 _13860 PS417_13865: PS417_13865 - bestrophin, at 3,045,752 to 3,046,645 _13865 Position (kb) 3044 3045 3046Strain fitness (log2 ratio) -2 -1 0 1at 3044.401 kb on + strand, within PS417_13855at 3044.785 kb on + strandat 3044.785 kb on + strandat 3044.786 kb on - strandat 3044.786 kb on - strandat 3045.555 kb on + strandat 3045.556 kb on - strandat 3045.756 kb on + strandat 3045.757 kb on - strandat 3045.894 kb on - strand, within PS417_13865at 3045.977 kb on + strandat 3045.977 kb on + strand, within PS417_13865at 3046.159 kb on + strand, within PS417_13865at 3046.275 kb on - strand, within PS417_13865at 3046.361 kb on + strand, within PS417_13865at 3046.363 kb on + strand, within PS417_13865at 3046.364 kb on - strand, within PS417_13865at 3046.364 kb on - strand, within PS417_13865at 3046.388 kb on + strand, within PS417_13865at 3046.389 kb on - strand, within PS417_13865at 3046.389 kb on - strand, within PS417_13865at 3046.389 kb on - strand, within PS417_13865at 3046.470 kb on - strand, within PS417_13865

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
remove
3,044,401 + PS417_13855 0.69 -0.0
3,044,785 + -0.0
3,044,785 + -0.1
3,044,786 - +0.2
3,044,786 - +0.1
3,045,555 + -0.4
3,045,556 - +0.3
3,045,756 + -0.2
3,045,757 - +0.3
3,045,894 - PS417_13865 0.16 -1.4
3,045,977 + -0.7
3,045,977 + PS417_13865 0.25 +0.4
3,046,159 + PS417_13865 0.46 -1.6
3,046,275 - PS417_13865 0.59 +0.0
3,046,361 + PS417_13865 0.68 +0.0
3,046,363 + PS417_13865 0.68 +0.5
3,046,364 - PS417_13865 0.68 -0.6
3,046,364 - PS417_13865 0.68 -0.7
3,046,388 + PS417_13865 0.71 +0.0
3,046,389 - PS417_13865 0.71 -0.7
3,046,389 - PS417_13865 0.71 +1.7
3,046,389 - PS417_13865 0.71 -0.2
3,046,470 - PS417_13865 0.80 -2.0

Or see this region's nucleotide sequence