Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0660

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0658 and Echvi_0659 overlap by 17 nucleotidesEchvi_0659 and Echvi_0660 are separated by 279 nucleotidesEchvi_0660 and Echvi_0661 are separated by 64 nucleotidesEchvi_0661 and Echvi_0662 are separated by 102 nucleotides Echvi_0658: Echvi_0658 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 742,613 to 743,203 _0658 Echvi_0659: Echvi_0659 - Uncharacterized membrane protein, required for colicin V production, at 743,187 to 743,732 _0659 Echvi_0660: Echvi_0660 - Uncharacterized conserved protein, at 744,012 to 744,458 _0660 Echvi_0661: Echvi_0661 - pyridoxine 5'-phosphate synthase, at 744,523 to 745,248 _0661 Echvi_0662: Echvi_0662 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 745,351 to 746,112 _0662 Position (kb) 744 745Strain fitness (log2 ratio) -2 -1 0 1 2 3at 743.063 kb on + strand, within Echvi_0658at 743.122 kb on + strand, within Echvi_0658at 743.122 kb on + strand, within Echvi_0658at 743.122 kb on + strand, within Echvi_0658at 743.122 kb on + strand, within Echvi_0658at 743.165 kb on - strandat 743.192 kb on + strandat 743.192 kb on + strandat 743.192 kb on + strandat 743.239 kb on - strandat 743.261 kb on + strand, within Echvi_0659at 743.289 kb on - strand, within Echvi_0659at 743.394 kb on - strand, within Echvi_0659at 743.394 kb on - strand, within Echvi_0659at 743.421 kb on - strand, within Echvi_0659at 743.435 kb on + strand, within Echvi_0659at 743.549 kb on + strand, within Echvi_0659at 743.550 kb on - strand, within Echvi_0659at 743.631 kb on - strand, within Echvi_0659at 743.682 kb on - strandat 743.683 kb on + strandat 743.684 kb on - strandat 743.691 kb on + strandat 743.711 kb on + strandat 743.711 kb on + strandat 743.711 kb on + strandat 743.711 kb on + strandat 743.712 kb on - strandat 743.712 kb on - strandat 743.712 kb on - strandat 743.734 kb on + strandat 743.734 kb on + strandat 743.740 kb on + strandat 743.747 kb on - strandat 743.750 kb on + strandat 743.750 kb on + strandat 743.751 kb on - strandat 743.751 kb on - strandat 743.751 kb on - strandat 743.751 kb on - strandat 743.754 kb on + strandat 743.821 kb on + strandat 743.906 kb on + strandat 743.907 kb on - strandat 743.907 kb on - strandat 743.907 kb on - strandat 744.126 kb on + strand, within Echvi_0660at 744.138 kb on - strand, within Echvi_0660at 744.182 kb on + strand, within Echvi_0660at 744.186 kb on + strand, within Echvi_0660at 744.201 kb on - strand, within Echvi_0660at 744.256 kb on + strand, within Echvi_0660at 744.256 kb on + strand, within Echvi_0660at 744.257 kb on - strand, within Echvi_0660at 744.300 kb on + strand, within Echvi_0660at 744.301 kb on - strand, within Echvi_0660at 744.359 kb on + strand, within Echvi_0660at 744.359 kb on + strand, within Echvi_0660at 744.360 kb on - strand, within Echvi_0660at 744.365 kb on + strand, within Echvi_0660at 744.439 kb on - strandat 744.511 kb on + strandat 744.511 kb on + strandat 744.511 kb on + strandat 744.512 kb on - strandat 745.247 kb on - strandat 745.254 kb on - strandat 745.306 kb on + strandat 745.359 kb on - strandat 745.366 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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743,063 + Echvi_0658 0.76 +0.9
743,122 + Echvi_0658 0.86 -0.5
743,122 + Echvi_0658 0.86 -0.2
743,122 + Echvi_0658 0.86 -0.9
743,122 + Echvi_0658 0.86 +1.1
743,165 - +0.3
743,192 + +0.3
743,192 + -0.8
743,192 + -0.4
743,239 - +0.2
743,261 + Echvi_0659 0.14 -0.6
743,289 - Echvi_0659 0.19 -0.4
743,394 - Echvi_0659 0.38 -1.1
743,394 - Echvi_0659 0.38 -0.6
743,421 - Echvi_0659 0.43 -0.8
743,435 + Echvi_0659 0.45 +1.1
743,549 + Echvi_0659 0.66 -0.8
743,550 - Echvi_0659 0.66 +0.2
743,631 - Echvi_0659 0.81 -0.2
743,682 - +0.4
743,683 + +1.6
743,684 - -1.5
743,691 + -1.0
743,711 + +0.6
743,711 + +0.1
743,711 + -0.0
743,711 + -0.0
743,712 - -1.5
743,712 - +1.5
743,712 - -0.2
743,734 + +0.7
743,734 + -0.0
743,740 + -0.1
743,747 - -0.3
743,750 + -0.9
743,750 + +0.1
743,751 - +0.2
743,751 - -0.2
743,751 - -1.3
743,751 - -1.0
743,754 + -0.5
743,821 + -0.3
743,906 + +0.2
743,907 - +0.2
743,907 - -0.4
743,907 - +3.0
744,126 + Echvi_0660 0.26 -0.6
744,138 - Echvi_0660 0.28 -1.7
744,182 + Echvi_0660 0.38 +1.3
744,186 + Echvi_0660 0.39 -0.2
744,201 - Echvi_0660 0.42 +0.2
744,256 + Echvi_0660 0.55 -1.1
744,256 + Echvi_0660 0.55 -1.5
744,257 - Echvi_0660 0.55 -0.3
744,300 + Echvi_0660 0.64 -0.1
744,301 - Echvi_0660 0.65 -0.4
744,359 + Echvi_0660 0.78 +0.0
744,359 + Echvi_0660 0.78 -0.2
744,360 - Echvi_0660 0.78 -2.0
744,365 + Echvi_0660 0.79 -0.1
744,439 - -0.2
744,511 + +1.2
744,511 + -0.5
744,511 + -0.5
744,512 - -2.6
745,247 - +0.6
745,254 - +0.3
745,306 + +0.8
745,359 - -1.0
745,366 - +0.5

Or see this region's nucleotide sequence