Strain Fitness in Agrobacterium fabrum C58 around Atu6063

Experiment: Rhamnogalacturonan - from potato (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6062 and Atu6063 are separated by 159 nucleotidesAtu6063 and Atu6064 are separated by 134 nucleotides Atu6062: Atu6062 - 2-deoxy-D-gluconate 3-dehydrogenase, at 73,926 to 74,696 Atu6062 Atu6063: Atu6063 - oxidoreductase, GMC family, at 74,856 to 76,481 Atu6063 Atu6064: Atu6064 - haloalkane dehalogenase, at 76,616 to 77,458 Atu6064 Position (kb) 74 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2at 73.898 kb on - strandat 73.918 kb on + strandat 73.936 kb on - strandat 73.962 kb on - strandat 73.963 kb on + strandat 73.963 kb on + strandat 74.084 kb on - strand, within Atu6062at 74.086 kb on + strand, within Atu6062at 74.094 kb on - strand, within Atu6062at 74.094 kb on - strand, within Atu6062at 74.094 kb on - strand, within Atu6062at 74.101 kb on - strand, within Atu6062at 74.122 kb on + strand, within Atu6062at 74.269 kb on + strand, within Atu6062at 74.311 kb on + strand, within Atu6062at 74.323 kb on + strand, within Atu6062at 74.438 kb on + strand, within Atu6062at 74.439 kb on + strand, within Atu6062at 74.439 kb on + strand, within Atu6062at 74.444 kb on + strand, within Atu6062at 74.466 kb on - strand, within Atu6062at 74.539 kb on + strand, within Atu6062at 74.547 kb on - strand, within Atu6062at 74.547 kb on - strand, within Atu6062at 74.547 kb on - strand, within Atu6062at 74.567 kb on + strand, within Atu6062at 74.656 kb on + strandat 74.724 kb on + strandat 74.779 kb on + strandat 74.787 kb on - strandat 74.787 kb on - strandat 74.787 kb on - strandat 74.792 kb on - strandat 74.844 kb on - strandat 74.892 kb on - strandat 74.974 kb on - strandat 74.974 kb on - strandat 74.974 kb on - strandat 74.985 kb on - strandat 75.056 kb on + strand, within Atu6063at 75.064 kb on - strand, within Atu6063at 75.076 kb on - strand, within Atu6063at 75.112 kb on + strand, within Atu6063at 75.118 kb on + strand, within Atu6063at 75.120 kb on - strand, within Atu6063at 75.162 kb on - strand, within Atu6063at 75.175 kb on + strand, within Atu6063at 75.175 kb on + strand, within Atu6063at 75.182 kb on + strand, within Atu6063at 75.182 kb on + strand, within Atu6063at 75.190 kb on - strand, within Atu6063at 75.190 kb on - strand, within Atu6063at 75.192 kb on + strand, within Atu6063at 75.200 kb on - strand, within Atu6063at 75.200 kb on - strand, within Atu6063at 75.200 kb on - strand, within Atu6063at 75.200 kb on - strand, within Atu6063at 75.202 kb on + strand, within Atu6063at 75.285 kb on - strand, within Atu6063at 75.287 kb on + strand, within Atu6063at 75.295 kb on - strand, within Atu6063at 75.300 kb on - strand, within Atu6063at 75.314 kb on - strand, within Atu6063at 75.351 kb on - strand, within Atu6063at 75.417 kb on - strand, within Atu6063at 75.418 kb on + strand, within Atu6063at 75.423 kb on - strand, within Atu6063at 75.429 kb on + strand, within Atu6063at 75.465 kb on + strand, within Atu6063at 75.490 kb on + strand, within Atu6063at 75.490 kb on + strand, within Atu6063at 75.490 kb on + strand, within Atu6063at 75.495 kb on + strand, within Atu6063at 75.498 kb on - strand, within Atu6063at 75.527 kb on - strand, within Atu6063at 75.559 kb on + strand, within Atu6063at 75.559 kb on + strand, within Atu6063at 75.567 kb on - strand, within Atu6063at 75.577 kb on - strand, within Atu6063at 75.584 kb on - strand, within Atu6063at 75.590 kb on - strand, within Atu6063at 75.623 kb on - strand, within Atu6063at 75.623 kb on - strand, within Atu6063at 75.648 kb on - strand, within Atu6063at 75.657 kb on - strand, within Atu6063at 75.676 kb on - strand, within Atu6063at 75.689 kb on - strand, within Atu6063at 75.798 kb on - strand, within Atu6063at 75.801 kb on + strand, within Atu6063at 75.801 kb on + strand, within Atu6063at 75.809 kb on - strand, within Atu6063at 75.958 kb on + strand, within Atu6063at 75.958 kb on - strand, within Atu6063at 75.961 kb on - strand, within Atu6063at 75.965 kb on + strand, within Atu6063at 75.998 kb on - strand, within Atu6063at 76.051 kb on + strand, within Atu6063at 76.157 kb on + strand, within Atu6063at 76.200 kb on - strand, within Atu6063at 76.209 kb on + strand, within Atu6063at 76.224 kb on + strand, within Atu6063at 76.224 kb on + strand, within Atu6063at 76.245 kb on + strand, within Atu6063at 76.246 kb on + strand, within Atu6063at 76.333 kb on + strandat 76.341 kb on - strandat 76.357 kb on - strandat 76.380 kb on - strandat 76.493 kb on - strandat 76.497 kb on + strandat 76.499 kb on + strandat 76.518 kb on - strandat 76.655 kb on + strandat 76.655 kb on - strandat 76.691 kb on + strandat 76.798 kb on + strand, within Atu6064at 76.824 kb on - strand, within Atu6064at 76.847 kb on + strand, within Atu6064at 76.898 kb on - strand, within Atu6064at 76.907 kb on - strand, within Atu6064at 76.945 kb on + strand, within Atu6064at 77.048 kb on + strand, within Atu6064at 77.053 kb on + strand, within Atu6064at 77.096 kb on + strand, within Atu6064at 77.113 kb on - strand, within Atu6064at 77.113 kb on - strand, within Atu6064at 77.113 kb on - strand, within Atu6064at 77.126 kb on + strand, within Atu6064at 77.133 kb on + strand, within Atu6064at 77.160 kb on + strand, within Atu6064at 77.160 kb on + strand, within Atu6064at 77.165 kb on + strand, within Atu6064at 77.168 kb on - strand, within Atu6064at 77.184 kb on + strand, within Atu6064at 77.184 kb on + strand, within Atu6064at 77.192 kb on - strand, within Atu6064at 77.244 kb on + strand, within Atu6064at 77.260 kb on + strand, within Atu6064at 77.292 kb on + strand, within Atu6064at 77.309 kb on - strand, within Atu6064at 77.420 kb on + strandat 77.420 kb on + strandat 77.475 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato (C)
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73,898 - +0.7
73,918 + -1.3
73,936 - +1.1
73,962 - +0.8
73,963 + -2.2
73,963 + +1.1
74,084 - Atu6062 0.20 -0.3
74,086 + Atu6062 0.21 +1.2
74,094 - Atu6062 0.22 -1.1
74,094 - Atu6062 0.22 -1.2
74,094 - Atu6062 0.22 +0.5
74,101 - Atu6062 0.23 -0.3
74,122 + Atu6062 0.25 -0.3
74,269 + Atu6062 0.44 +0.4
74,311 + Atu6062 0.50 -0.9
74,323 + Atu6062 0.51 +0.7
74,438 + Atu6062 0.66 -0.5
74,439 + Atu6062 0.67 +0.7
74,439 + Atu6062 0.67 -0.6
74,444 + Atu6062 0.67 -1.5
74,466 - Atu6062 0.70 -0.7
74,539 + Atu6062 0.80 -1.6
74,547 - Atu6062 0.81 -1.2
74,547 - Atu6062 0.81 +1.4
74,547 - Atu6062 0.81 +1.1
74,567 + Atu6062 0.83 -2.4
74,656 + +0.7
74,724 + +0.0
74,779 + +0.3
74,787 - -0.6
74,787 - +0.3
74,787 - +0.4
74,792 - +0.9
74,844 - +0.9
74,892 - +1.1
74,974 - -0.6
74,974 - -0.7
74,974 - +0.6
74,985 - +1.6
75,056 + Atu6063 0.12 +1.4
75,064 - Atu6063 0.13 -1.7
75,076 - Atu6063 0.14 +0.3
75,112 + Atu6063 0.16 -0.8
75,118 + Atu6063 0.16 -0.6
75,120 - Atu6063 0.16 -0.3
75,162 - Atu6063 0.19 +1.7
75,175 + Atu6063 0.20 +0.2
75,175 + Atu6063 0.20 -0.1
75,182 + Atu6063 0.20 -1.0
75,182 + Atu6063 0.20 -1.4
75,190 - Atu6063 0.21 +0.4
75,190 - Atu6063 0.21 +0.3
75,192 + Atu6063 0.21 -0.6
75,200 - Atu6063 0.21 -0.3
75,200 - Atu6063 0.21 -0.9
75,200 - Atu6063 0.21 +0.8
75,200 - Atu6063 0.21 -0.9
75,202 + Atu6063 0.21 -1.1
75,285 - Atu6063 0.26 -0.1
75,287 + Atu6063 0.27 +0.5
75,295 - Atu6063 0.27 -0.5
75,300 - Atu6063 0.27 -0.1
75,314 - Atu6063 0.28 +0.9
75,351 - Atu6063 0.30 +0.1
75,417 - Atu6063 0.35 -0.1
75,418 + Atu6063 0.35 +0.4
75,423 - Atu6063 0.35 +1.2
75,429 + Atu6063 0.35 -0.5
75,465 + Atu6063 0.37 -0.0
75,490 + Atu6063 0.39 -1.1
75,490 + Atu6063 0.39 +0.1
75,490 + Atu6063 0.39 -1.7
75,495 + Atu6063 0.39 +0.4
75,498 - Atu6063 0.39 -2.1
75,527 - Atu6063 0.41 -0.3
75,559 + Atu6063 0.43 +2.7
75,559 + Atu6063 0.43 -1.6
75,567 - Atu6063 0.44 -1.8
75,577 - Atu6063 0.44 +1.0
75,584 - Atu6063 0.45 -0.6
75,590 - Atu6063 0.45 +0.7
75,623 - Atu6063 0.47 +0.6
75,623 - Atu6063 0.47 -2.1
75,648 - Atu6063 0.49 -1.7
75,657 - Atu6063 0.49 -0.4
75,676 - Atu6063 0.50 -1.8
75,689 - Atu6063 0.51 +2.4
75,798 - Atu6063 0.58 -1.9
75,801 + Atu6063 0.58 -1.3
75,801 + Atu6063 0.58 +0.2
75,809 - Atu6063 0.59 -2.6
75,958 + Atu6063 0.68 -0.1
75,958 - Atu6063 0.68 -1.5
75,961 - Atu6063 0.68 +0.6
75,965 + Atu6063 0.68 -0.4
75,998 - Atu6063 0.70 +1.0
76,051 + Atu6063 0.73 +0.5
76,157 + Atu6063 0.80 -0.7
76,200 - Atu6063 0.83 +0.6
76,209 + Atu6063 0.83 -0.1
76,224 + Atu6063 0.84 +0.9
76,224 + Atu6063 0.84 +0.6
76,245 + Atu6063 0.85 +1.5
76,246 + Atu6063 0.85 +2.5
76,333 + +0.4
76,341 - +0.1
76,357 - +0.7
76,380 - +0.4
76,493 - -0.4
76,497 + +0.1
76,499 + +1.2
76,518 - -0.8
76,655 + +0.3
76,655 - -0.9
76,691 + +0.3
76,798 + Atu6064 0.22 +0.2
76,824 - Atu6064 0.25 -0.7
76,847 + Atu6064 0.27 -0.2
76,898 - Atu6064 0.33 +0.9
76,907 - Atu6064 0.35 +1.1
76,945 + Atu6064 0.39 +0.5
77,048 + Atu6064 0.51 -0.8
77,053 + Atu6064 0.52 -1.6
77,096 + Atu6064 0.57 -0.4
77,113 - Atu6064 0.59 +0.2
77,113 - Atu6064 0.59 +0.2
77,113 - Atu6064 0.59 +0.4
77,126 + Atu6064 0.60 +0.4
77,133 + Atu6064 0.61 +0.3
77,160 + Atu6064 0.65 -1.6
77,160 + Atu6064 0.65 +1.4
77,165 + Atu6064 0.65 +0.5
77,168 - Atu6064 0.65 +0.2
77,184 + Atu6064 0.67 -1.0
77,184 + Atu6064 0.67 -0.0
77,192 - Atu6064 0.68 -0.1
77,244 + Atu6064 0.74 +0.1
77,260 + Atu6064 0.76 -1.2
77,292 + Atu6064 0.80 -0.8
77,309 - Atu6064 0.82 +0.4
77,420 + -0.9
77,420 + +1.7
77,475 - -0.3

Or see this region's nucleotide sequence