Experiment: Rhamnogalacturonan - from potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5143 and Atu5144 are separated by 130 nucleotides Atu5144 and Atu5145 are separated by 69 nucleotides Atu5145 and Atu5146 are separated by 39 nucleotides Atu5146 and Atu5147 are separated by 61 nucleotides Atu5147 and Atu5148 are separated by 83 nucleotides
Atu5143: Atu5143 - transacetylase, at 149,290 to 150,114
Atu5143
Atu5144: Atu5144 - putative peptidase, at 150,245 to 151,000
Atu5144
Atu5145: Atu5145 - acetyltransferase, at 151,070 to 151,528
Atu5145
Atu5146: Atu5146 - hypothetical protein, at 151,568 to 151,765
Atu5146
Atu5147: Atu5147 - Mg(2+) transport ATPase, at 151,827 to 152,411
Atu5147
Atu5148: Atu5148 - hypothetical protein, at 152,495 to 152,899
Atu5148
Position (kb) 151
152 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 150.078 kb on + strand at 150.086 kb on - strand at 150.086 kb on - strand at 150.149 kb on + strand at 150.157 kb on - strand at 150.246 kb on + strand at 150.261 kb on - strand at 150.267 kb on + strand at 150.267 kb on + strand at 150.267 kb on + strand at 150.275 kb on - strand at 150.285 kb on - strand at 150.469 kb on - strand, within Atu5144 at 150.527 kb on + strand, within Atu5144 at 150.550 kb on + strand, within Atu5144 at 150.569 kb on - strand, within Atu5144 at 150.663 kb on - strand, within Atu5144 at 150.672 kb on + strand, within Atu5144 at 150.704 kb on - strand, within Atu5144 at 150.743 kb on + strand, within Atu5144 at 150.801 kb on + strand, within Atu5144 at 150.876 kb on + strand, within Atu5144 at 150.884 kb on - strand, within Atu5144 at 150.937 kb on + strand at 150.942 kb on + strand at 150.942 kb on + strand at 150.942 kb on + strand at 150.942 kb on + strand at 150.942 kb on + strand at 150.942 kb on + strand at 150.945 kb on - strand at 150.950 kb on - strand at 150.950 kb on - strand at 150.950 kb on - strand at 151.018 kb on - strand at 151.181 kb on + strand, within Atu5145 at 151.185 kb on - strand, within Atu5145 at 151.209 kb on - strand, within Atu5145 at 151.329 kb on + strand, within Atu5145 at 151.379 kb on + strand, within Atu5145 at 151.387 kb on - strand, within Atu5145 at 151.387 kb on - strand, within Atu5145 at 151.556 kb on - strand at 151.577 kb on + strand at 151.595 kb on - strand, within Atu5146 at 151.692 kb on + strand, within Atu5146 at 151.721 kb on + strand, within Atu5146 at 151.792 kb on - strand at 151.800 kb on + strand at 151.828 kb on - strand at 151.945 kb on - strand, within Atu5147 at 151.986 kb on + strand, within Atu5147 at 152.012 kb on + strand, within Atu5147 at 152.056 kb on - strand, within Atu5147 at 152.064 kb on - strand, within Atu5147 at 152.154 kb on + strand, within Atu5147 at 152.162 kb on - strand, within Atu5147 at 152.202 kb on + strand, within Atu5147 at 152.202 kb on + strand, within Atu5147 at 152.202 kb on + strand, within Atu5147 at 152.202 kb on + strand, within Atu5147 at 152.210 kb on - strand, within Atu5147 at 152.262 kb on - strand, within Atu5147 at 152.323 kb on - strand, within Atu5147 at 152.330 kb on + strand, within Atu5147 at 152.354 kb on + strand at 152.355 kb on + strand at 152.375 kb on + strand at 152.433 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato (C) remove 150,078 + -0.3 150,086 - +1.7 150,086 - -2.6 150,149 + -0.0 150,157 - -0.6 150,246 + +0.5 150,261 - +1.3 150,267 + +0.2 150,267 + -0.2 150,267 + +1.2 150,275 - -0.9 150,285 - +0.3 150,469 - Atu5144 0.30 -1.1 150,527 + Atu5144 0.37 -0.7 150,550 + Atu5144 0.40 +1.1 150,569 - Atu5144 0.43 +0.2 150,663 - Atu5144 0.55 +1.0 150,672 + Atu5144 0.56 -0.8 150,704 - Atu5144 0.61 +0.1 150,743 + Atu5144 0.66 +1.0 150,801 + Atu5144 0.74 +0.1 150,876 + Atu5144 0.83 +1.0 150,884 - Atu5144 0.85 +0.3 150,937 + -0.0 150,942 + +1.2 150,942 + -1.9 150,942 + -0.8 150,942 + -0.0 150,942 + -1.3 150,942 + -0.0 150,945 - -0.3 150,950 - -1.1 150,950 - -1.9 150,950 - +1.3 151,018 - +0.7 151,181 + Atu5145 0.24 -1.1 151,185 - Atu5145 0.25 -0.9 151,209 - Atu5145 0.30 -0.6 151,329 + Atu5145 0.56 +0.8 151,379 + Atu5145 0.67 -1.5 151,387 - Atu5145 0.69 -0.4 151,387 - Atu5145 0.69 +4.6 151,556 - -0.2 151,577 + -0.6 151,595 - Atu5146 0.14 -1.2 151,692 + Atu5146 0.63 +0.6 151,721 + Atu5146 0.77 -0.9 151,792 - +1.0 151,800 + +0.6 151,828 - +0.4 151,945 - Atu5147 0.20 +0.8 151,986 + Atu5147 0.27 +0.5 152,012 + Atu5147 0.32 -2.9 152,056 - Atu5147 0.39 -1.0 152,064 - Atu5147 0.41 +2.0 152,154 + Atu5147 0.56 +1.1 152,162 - Atu5147 0.57 +1.6 152,202 + Atu5147 0.64 -1.1 152,202 + Atu5147 0.64 -2.9 152,202 + Atu5147 0.64 +0.0 152,202 + Atu5147 0.64 -3.5 152,210 - Atu5147 0.65 -0.3 152,262 - Atu5147 0.74 -0.6 152,323 - Atu5147 0.85 -0.2 152,330 + Atu5147 0.86 -1.3 152,354 + -2.0 152,355 + +0.2 152,375 + -0.3 152,433 + -0.4
Or see this region's nucleotide sequence