Experiment: Rhamnogalacturonan - from potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5044 and Atu5045 overlap by 20 nucleotides Atu5045 and Atu5046 are separated by 356 nucleotides Atu5046 and Atu5047 are separated by 0 nucleotides
Atu5044: Atu5044 - hypothetical protein, at 44,352 to 45,479
Atu5044
Atu5045: Atu5045 - hypothetical protein, at 45,460 to 46,200
Atu5045
Atu5046: Atu5046 - hypothetical protein, at 46,557 to 46,904
Atu5046
Atu5047: Atu5047 - hypothetical protein, at 46,905 to 47,141
Atu5047
Position (kb) 45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 44.588 kb on + strand, within Atu5044 at 44.611 kb on + strand, within Atu5044 at 44.623 kb on - strand, within Atu5044 at 44.624 kb on - strand, within Atu5044 at 44.656 kb on + strand, within Atu5044 at 44.702 kb on + strand, within Atu5044 at 44.711 kb on - strand, within Atu5044 at 44.722 kb on + strand, within Atu5044 at 44.722 kb on + strand, within Atu5044 at 44.730 kb on - strand, within Atu5044 at 44.754 kb on + strand, within Atu5044 at 44.811 kb on - strand, within Atu5044 at 44.815 kb on + strand, within Atu5044 at 44.820 kb on + strand, within Atu5044 at 44.842 kb on - strand, within Atu5044 at 44.872 kb on - strand, within Atu5044 at 44.925 kb on - strand, within Atu5044 at 44.943 kb on - strand, within Atu5044 at 44.976 kb on + strand, within Atu5044 at 45.031 kb on - strand, within Atu5044 at 45.069 kb on + strand, within Atu5044 at 45.072 kb on - strand, within Atu5044 at 45.097 kb on + strand, within Atu5044 at 45.097 kb on + strand, within Atu5044 at 45.105 kb on - strand, within Atu5044 at 45.105 kb on - strand, within Atu5044 at 45.105 kb on - strand, within Atu5044 at 45.114 kb on + strand, within Atu5044 at 45.131 kb on - strand, within Atu5044 at 45.138 kb on - strand, within Atu5044 at 45.142 kb on + strand, within Atu5044 at 45.220 kb on + strand, within Atu5044 at 45.220 kb on + strand, within Atu5044 at 45.228 kb on - strand, within Atu5044 at 45.228 kb on - strand, within Atu5044 at 45.228 kb on - strand, within Atu5044 at 45.256 kb on + strand, within Atu5044 at 45.274 kb on - strand, within Atu5044 at 45.279 kb on + strand, within Atu5044 at 45.284 kb on + strand, within Atu5044 at 45.292 kb on - strand, within Atu5044 at 45.303 kb on + strand, within Atu5044 at 45.303 kb on - strand, within Atu5044 at 45.322 kb on + strand, within Atu5044 at 45.353 kb on - strand, within Atu5044 at 45.353 kb on - strand, within Atu5044 at 45.363 kb on + strand, within Atu5044 at 45.382 kb on + strand at 45.428 kb on - strand at 45.428 kb on - strand at 45.432 kb on + strand at 45.443 kb on + strand at 45.542 kb on + strand, within Atu5045 at 45.542 kb on - strand, within Atu5045 at 45.560 kb on - strand, within Atu5045 at 46.308 kb on + strand at 46.323 kb on - strand at 46.425 kb on - strand at 46.444 kb on + strand at 46.455 kb on - strand at 46.455 kb on - strand at 46.520 kb on + strand at 46.529 kb on + strand at 46.585 kb on + strand at 46.633 kb on + strand, within Atu5046 at 46.729 kb on - strand, within Atu5046 at 46.764 kb on + strand, within Atu5046 at 46.792 kb on + strand, within Atu5046 at 46.800 kb on - strand, within Atu5046 at 46.857 kb on - strand, within Atu5046 at 46.945 kb on + strand, within Atu5047 at 46.953 kb on - strand, within Atu5047 at 46.965 kb on - strand, within Atu5047 at 46.989 kb on - strand, within Atu5047 at 46.993 kb on - strand, within Atu5047 at 47.027 kb on + strand, within Atu5047 at 47.059 kb on + strand, within Atu5047 at 47.125 kb on - strand at 47.157 kb on - strand at 47.157 kb on - strand at 47.170 kb on - strand at 47.188 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato (C) remove 44,588 + Atu5044 0.21 -1.9 44,611 + Atu5044 0.23 -0.4 44,623 - Atu5044 0.24 -1.8 44,624 - Atu5044 0.24 +0.7 44,656 + Atu5044 0.27 +1.4 44,702 + Atu5044 0.31 -1.1 44,711 - Atu5044 0.32 +2.7 44,722 + Atu5044 0.33 +2.1 44,722 + Atu5044 0.33 -2.2 44,730 - Atu5044 0.34 +1.0 44,754 + Atu5044 0.36 -2.3 44,811 - Atu5044 0.41 -0.6 44,815 + Atu5044 0.41 -1.1 44,820 + Atu5044 0.41 -0.5 44,842 - Atu5044 0.43 +0.9 44,872 - Atu5044 0.46 +1.6 44,925 - Atu5044 0.51 +0.2 44,943 - Atu5044 0.52 +0.5 44,976 + Atu5044 0.55 -2.3 45,031 - Atu5044 0.60 -1.5 45,069 + Atu5044 0.64 +0.6 45,072 - Atu5044 0.64 +0.8 45,097 + Atu5044 0.66 +1.6 45,097 + Atu5044 0.66 +0.2 45,105 - Atu5044 0.67 +0.1 45,105 - Atu5044 0.67 +0.3 45,105 - Atu5044 0.67 -0.1 45,114 + Atu5044 0.68 +0.6 45,131 - Atu5044 0.69 -0.0 45,138 - Atu5044 0.70 +1.7 45,142 + Atu5044 0.70 -0.3 45,220 + Atu5044 0.77 +0.7 45,220 + Atu5044 0.77 +0.9 45,228 - Atu5044 0.78 -1.5 45,228 - Atu5044 0.78 +2.6 45,228 - Atu5044 0.78 -0.3 45,256 + Atu5044 0.80 +0.0 45,274 - Atu5044 0.82 -0.7 45,279 + Atu5044 0.82 +0.3 45,284 + Atu5044 0.83 -0.4 45,292 - Atu5044 0.83 +0.6 45,303 + Atu5044 0.84 -1.6 45,303 - Atu5044 0.84 -1.1 45,322 + Atu5044 0.86 +0.6 45,353 - Atu5044 0.89 -0.5 45,353 - Atu5044 0.89 +1.8 45,363 + Atu5044 0.90 +1.2 45,382 + +0.6 45,428 - +1.3 45,428 - -2.9 45,432 + -0.4 45,443 + +1.1 45,542 + Atu5045 0.11 -1.1 45,542 - Atu5045 0.11 -1.3 45,560 - Atu5045 0.13 -0.7 46,308 + +0.6 46,323 - +1.0 46,425 - +0.6 46,444 + +1.2 46,455 - -0.8 46,455 - +0.5 46,520 + +0.4 46,529 + +1.2 46,585 + +0.3 46,633 + Atu5046 0.22 +0.6 46,729 - Atu5046 0.49 +2.2 46,764 + Atu5046 0.59 +0.9 46,792 + Atu5046 0.68 -1.4 46,800 - Atu5046 0.70 +0.6 46,857 - Atu5046 0.86 -1.0 46,945 + Atu5047 0.17 -1.6 46,953 - Atu5047 0.20 +0.3 46,965 - Atu5047 0.25 -0.1 46,989 - Atu5047 0.35 -1.2 46,993 - Atu5047 0.37 -0.6 47,027 + Atu5047 0.51 -1.3 47,059 + Atu5047 0.65 -2.1 47,125 - -0.2 47,157 - +0.4 47,157 - +0.8 47,170 - +0.2 47,188 + +0.1
Or see this region's nucleotide sequence