Experiment: Rhamnogalacturonan - from potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5005 and Atu5006 are separated by 60 nucleotides Atu5006 and Atu5007 are separated by 225 nucleotides
Atu5005: Atu5005 - deoxyfructosyl-amino acid ABC-type membrane transporter, at 6,352 to 7,860
Atu5005
Atu5006: Atu5006 - deoxyfructosyl-amino acid transporter periplasmic binding protein, at 7,921 to 8,754
Atu5006
Atu5007: Atu5007 - santhopine-responsive transcriptional repressor, at 8,980 to 10,044
Atu5007
Position (kb) 7
8
9 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 7.013 kb on + strand, within Atu5005 at 7.013 kb on - strand, within Atu5005 at 7.021 kb on - strand, within Atu5005 at 7.041 kb on - strand, within Atu5005 at 7.146 kb on - strand, within Atu5005 at 7.196 kb on + strand, within Atu5005 at 7.209 kb on - strand, within Atu5005 at 7.217 kb on - strand, within Atu5005 at 7.279 kb on + strand, within Atu5005 at 7.279 kb on + strand, within Atu5005 at 7.279 kb on + strand, within Atu5005 at 7.287 kb on - strand, within Atu5005 at 7.287 kb on - strand, within Atu5005 at 7.287 kb on - strand, within Atu5005 at 7.287 kb on - strand, within Atu5005 at 7.320 kb on - strand, within Atu5005 at 7.357 kb on + strand, within Atu5005 at 7.393 kb on + strand, within Atu5005 at 7.401 kb on - strand, within Atu5005 at 7.401 kb on - strand, within Atu5005 at 7.431 kb on + strand, within Atu5005 at 7.468 kb on - strand, within Atu5005 at 7.564 kb on - strand, within Atu5005 at 7.599 kb on + strand, within Atu5005 at 7.617 kb on + strand, within Atu5005 at 7.655 kb on + strand, within Atu5005 at 7.655 kb on + strand, within Atu5005 at 7.663 kb on - strand, within Atu5005 at 7.663 kb on - strand, within Atu5005 at 7.680 kb on + strand, within Atu5005 at 7.688 kb on - strand, within Atu5005 at 7.721 kb on - strand at 7.803 kb on - strand at 7.842 kb on + strand at 7.855 kb on + strand at 7.871 kb on - strand at 7.871 kb on - strand at 7.916 kb on + strand at 8.018 kb on + strand, within Atu5006 at 8.026 kb on - strand, within Atu5006 at 8.026 kb on - strand, within Atu5006 at 8.030 kb on + strand, within Atu5006 at 8.031 kb on - strand, within Atu5006 at 8.038 kb on - strand, within Atu5006 at 8.050 kb on - strand, within Atu5006 at 8.137 kb on - strand, within Atu5006 at 8.185 kb on - strand, within Atu5006 at 8.272 kb on + strand, within Atu5006 at 8.307 kb on - strand, within Atu5006 at 8.347 kb on + strand, within Atu5006 at 8.376 kb on + strand, within Atu5006 at 8.579 kb on + strand, within Atu5006 at 8.580 kb on - strand, within Atu5006 at 8.599 kb on - strand, within Atu5006 at 8.630 kb on + strand, within Atu5006 at 8.682 kb on + strand at 8.771 kb on + strand at 8.899 kb on - strand at 8.920 kb on - strand at 8.994 kb on + strand at 9.043 kb on - strand at 9.051 kb on + strand at 9.080 kb on + strand at 9.209 kb on - strand, within Atu5007 at 9.313 kb on + strand, within Atu5007 at 9.401 kb on + strand, within Atu5007 at 9.424 kb on - strand, within Atu5007 at 9.468 kb on - strand, within Atu5007 at 9.638 kb on + strand, within Atu5007 at 9.646 kb on - strand, within Atu5007 at 9.651 kb on + strand, within Atu5007
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato (C) remove 7,013 + Atu5005 0.44 +0.5 7,013 - Atu5005 0.44 +1.0 7,021 - Atu5005 0.44 -0.5 7,041 - Atu5005 0.46 -0.4 7,146 - Atu5005 0.53 +2.9 7,196 + Atu5005 0.56 -3.6 7,209 - Atu5005 0.57 +0.4 7,217 - Atu5005 0.57 -0.4 7,279 + Atu5005 0.61 -0.1 7,279 + Atu5005 0.61 +1.8 7,279 + Atu5005 0.61 +0.4 7,287 - Atu5005 0.62 -0.5 7,287 - Atu5005 0.62 -0.4 7,287 - Atu5005 0.62 +0.7 7,287 - Atu5005 0.62 -0.1 7,320 - Atu5005 0.64 +2.3 7,357 + Atu5005 0.67 +1.3 7,393 + Atu5005 0.69 -1.7 7,401 - Atu5005 0.70 -0.6 7,401 - Atu5005 0.70 -0.3 7,431 + Atu5005 0.72 +0.2 7,468 - Atu5005 0.74 -0.2 7,564 - Atu5005 0.80 -0.1 7,599 + Atu5005 0.83 -0.3 7,617 + Atu5005 0.84 +0.6 7,655 + Atu5005 0.86 +0.1 7,655 + Atu5005 0.86 +0.4 7,663 - Atu5005 0.87 +0.2 7,663 - Atu5005 0.87 -0.1 7,680 + Atu5005 0.88 -1.2 7,688 - Atu5005 0.89 -1.4 7,721 - +0.6 7,803 - +2.6 7,842 + -0.6 7,855 + -2.4 7,871 - +0.1 7,871 - +0.2 7,916 + +1.4 8,018 + Atu5006 0.12 -0.9 8,026 - Atu5006 0.13 -0.3 8,026 - Atu5006 0.13 -3.3 8,030 + Atu5006 0.13 +2.2 8,031 - Atu5006 0.13 -0.3 8,038 - Atu5006 0.14 -0.0 8,050 - Atu5006 0.15 +4.1 8,137 - Atu5006 0.26 +0.1 8,185 - Atu5006 0.32 -0.3 8,272 + Atu5006 0.42 -0.9 8,307 - Atu5006 0.46 -0.0 8,347 + Atu5006 0.51 +0.6 8,376 + Atu5006 0.55 -0.8 8,579 + Atu5006 0.79 -1.6 8,580 - Atu5006 0.79 +0.7 8,599 - Atu5006 0.81 +0.4 8,630 + Atu5006 0.85 -0.4 8,682 + -1.1 8,771 + -1.0 8,899 - +0.6 8,920 - -2.3 8,994 + +2.4 9,043 - +1.6 9,051 + -0.9 9,080 + +0.6 9,209 - Atu5007 0.22 -0.2 9,313 + Atu5007 0.31 +0.4 9,401 + Atu5007 0.40 +0.8 9,424 - Atu5007 0.42 -0.4 9,468 - Atu5007 0.46 +0.2 9,638 + Atu5007 0.62 +0.6 9,646 - Atu5007 0.63 +0.9 9,651 + Atu5007 0.63 -1.8
Or see this region's nucleotide sequence