Experiment: Rhamnogalacturonan - from potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3529 and Atu3530 are separated by 3 nucleotides Atu3530 and Atu3531 are separated by 17 nucleotides Atu3531 and Atu3532 are separated by 22 nucleotides
Atu3529: Atu3529 - mannonate dehydratase, at 578,115 to 579,308
Atu3529
Atu3530: Atu3530 - mannitol dehydrogenase, at 579,312 to 580,784
Atu3530
Atu3531: Atu3531 - 3-oxoacyl-ACP reductase, at 580,802 to 581,542
Atu3531
Atu3532: Atu3532 - GntR family transcriptional regulator, at 581,565 to 582,314
Atu3532
Position (kb) 579
580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 578.312 kb on - strand, within Atu3529 at 578.501 kb on + strand, within Atu3529 at 578.509 kb on - strand, within Atu3529 at 578.510 kb on - strand, within Atu3529 at 578.684 kb on + strand, within Atu3529 at 578.743 kb on + strand, within Atu3529 at 578.751 kb on - strand, within Atu3529 at 578.944 kb on + strand, within Atu3529 at 579.042 kb on - strand, within Atu3529 at 579.112 kb on - strand, within Atu3529 at 579.130 kb on + strand, within Atu3529 at 579.132 kb on + strand, within Atu3529 at 579.207 kb on + strand at 579.221 kb on - strand at 579.221 kb on - strand at 579.221 kb on - strand at 579.265 kb on - strand at 579.317 kb on - strand at 579.354 kb on + strand at 579.362 kb on - strand at 579.362 kb on - strand at 579.407 kb on - strand at 579.486 kb on + strand, within Atu3530 at 579.491 kb on + strand, within Atu3530 at 579.494 kb on - strand, within Atu3530 at 579.519 kb on + strand, within Atu3530 at 579.556 kb on + strand, within Atu3530 at 579.561 kb on + strand, within Atu3530 at 579.669 kb on + strand, within Atu3530 at 579.736 kb on + strand, within Atu3530 at 579.743 kb on - strand, within Atu3530 at 579.826 kb on - strand, within Atu3530 at 579.858 kb on - strand, within Atu3530 at 579.906 kb on - strand, within Atu3530 at 580.040 kb on - strand, within Atu3530 at 580.052 kb on - strand, within Atu3530 at 580.196 kb on + strand, within Atu3530 at 580.204 kb on - strand, within Atu3530 at 580.231 kb on + strand, within Atu3530 at 580.247 kb on + strand, within Atu3530 at 580.257 kb on - strand, within Atu3530 at 580.389 kb on - strand, within Atu3530 at 580.422 kb on - strand, within Atu3530 at 580.446 kb on - strand, within Atu3530 at 580.551 kb on - strand, within Atu3530 at 580.574 kb on + strand, within Atu3530 at 580.574 kb on + strand, within Atu3530 at 580.641 kb on + strand at 580.715 kb on + strand at 581.049 kb on + strand, within Atu3531 at 581.099 kb on - strand, within Atu3531 at 581.179 kb on - strand, within Atu3531 at 581.231 kb on + strand, within Atu3531 at 581.239 kb on - strand, within Atu3531 at 581.273 kb on - strand, within Atu3531 at 581.330 kb on + strand, within Atu3531 at 581.373 kb on - strand, within Atu3531 at 581.536 kb on + strand at 581.550 kb on + strand at 581.625 kb on + strand at 581.680 kb on - strand, within Atu3532 at 581.691 kb on + strand, within Atu3532
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato (C) remove 578,312 - Atu3529 0.16 -1.2 578,501 + Atu3529 0.32 +1.1 578,509 - Atu3529 0.33 -3.6 578,510 - Atu3529 0.33 +0.6 578,684 + Atu3529 0.48 -0.0 578,743 + Atu3529 0.53 +1.6 578,751 - Atu3529 0.53 -0.4 578,944 + Atu3529 0.69 +0.2 579,042 - Atu3529 0.78 +0.2 579,112 - Atu3529 0.84 -0.0 579,130 + Atu3529 0.85 -0.3 579,132 + Atu3529 0.85 -0.2 579,207 + +0.6 579,221 - -1.5 579,221 - -0.4 579,221 - +0.1 579,265 - +0.9 579,317 - +0.1 579,354 + -0.3 579,362 - +0.3 579,362 - +0.4 579,407 - -0.0 579,486 + Atu3530 0.12 +0.1 579,491 + Atu3530 0.12 -0.0 579,494 - Atu3530 0.12 -0.1 579,519 + Atu3530 0.14 -0.3 579,556 + Atu3530 0.17 +2.3 579,561 + Atu3530 0.17 +0.7 579,669 + Atu3530 0.24 -0.8 579,736 + Atu3530 0.29 +0.5 579,743 - Atu3530 0.29 -0.5 579,826 - Atu3530 0.35 +0.7 579,858 - Atu3530 0.37 +0.2 579,906 - Atu3530 0.40 +0.2 580,040 - Atu3530 0.49 -1.4 580,052 - Atu3530 0.50 -0.7 580,196 + Atu3530 0.60 -0.2 580,204 - Atu3530 0.61 +0.3 580,231 + Atu3530 0.62 -1.2 580,247 + Atu3530 0.63 +1.0 580,257 - Atu3530 0.64 +1.9 580,389 - Atu3530 0.73 +0.7 580,422 - Atu3530 0.75 +0.3 580,446 - Atu3530 0.77 +0.1 580,551 - Atu3530 0.84 -1.4 580,574 + Atu3530 0.86 +1.1 580,574 + Atu3530 0.86 +1.6 580,641 + +0.6 580,715 + -0.2 581,049 + Atu3531 0.33 +0.4 581,099 - Atu3531 0.40 -0.5 581,179 - Atu3531 0.51 -2.4 581,231 + Atu3531 0.58 +0.6 581,239 - Atu3531 0.59 -0.2 581,273 - Atu3531 0.64 +0.6 581,330 + Atu3531 0.71 +0.6 581,373 - Atu3531 0.77 +0.3 581,536 + +0.4 581,550 + -0.1 581,625 + -0.7 581,680 - Atu3532 0.15 -0.1 581,691 + Atu3532 0.17 -0.6
Or see this region's nucleotide sequence