Experiment: Rhamnogalacturonan - from potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3341 and Atu3342 are separated by 57 nucleotides Atu3342 and Atu3343 are separated by 6 nucleotides
Atu3341: Atu3341 - trehalose/maltose ABC transporter ATPase, at 375,622 to 376,650
Atu3341
Atu3342: Atu3342 - trehalose utilization-like protein, at 376,708 to 377,493
Atu3342
Atu3343: Atu3343 - trehalose utilization-like protein, at 377,500 to 378,549
Atu3343
Position (kb) 376
377
378 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 375.756 kb on + strand, within Atu3341 at 375.885 kb on + strand, within Atu3341 at 375.981 kb on - strand, within Atu3341 at 375.987 kb on + strand, within Atu3341 at 375.998 kb on + strand, within Atu3341 at 376.006 kb on - strand, within Atu3341 at 376.073 kb on + strand, within Atu3341 at 376.081 kb on - strand, within Atu3341 at 376.201 kb on + strand, within Atu3341 at 376.203 kb on - strand, within Atu3341 at 376.206 kb on + strand, within Atu3341 at 376.230 kb on + strand, within Atu3341 at 376.630 kb on + strand at 376.729 kb on - strand at 376.799 kb on - strand, within Atu3342 at 376.833 kb on - strand, within Atu3342 at 376.859 kb on + strand, within Atu3342 at 376.944 kb on + strand, within Atu3342 at 376.984 kb on + strand, within Atu3342 at 376.985 kb on + strand, within Atu3342 at 376.998 kb on - strand, within Atu3342 at 377.163 kb on + strand, within Atu3342 at 377.171 kb on - strand, within Atu3342 at 377.228 kb on - strand, within Atu3342 at 377.307 kb on - strand, within Atu3342 at 377.393 kb on + strand, within Atu3342 at 377.459 kb on + strand at 377.461 kb on - strand at 377.461 kb on - strand at 377.490 kb on - strand at 377.618 kb on + strand, within Atu3343 at 377.654 kb on - strand, within Atu3343 at 377.858 kb on - strand, within Atu3343 at 377.894 kb on - strand, within Atu3343 at 377.958 kb on - strand, within Atu3343 at 378.025 kb on + strand, within Atu3343 at 378.075 kb on - strand, within Atu3343 at 378.123 kb on + strand, within Atu3343 at 378.131 kb on - strand, within Atu3343 at 378.131 kb on - strand, within Atu3343 at 378.251 kb on - strand, within Atu3343 at 378.269 kb on + strand, within Atu3343 at 378.273 kb on + strand, within Atu3343 at 378.299 kb on - strand, within Atu3343 at 378.329 kb on + strand, within Atu3343
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato (C) remove 375,756 + Atu3341 0.13 +0.6 375,885 + Atu3341 0.26 -0.1 375,981 - Atu3341 0.35 -0.4 375,987 + Atu3341 0.35 +0.7 375,998 + Atu3341 0.37 -0.0 376,006 - Atu3341 0.37 +1.0 376,073 + Atu3341 0.44 -0.2 376,081 - Atu3341 0.45 +0.1 376,201 + Atu3341 0.56 +0.2 376,203 - Atu3341 0.56 -0.5 376,206 + Atu3341 0.57 +1.4 376,230 + Atu3341 0.59 +1.0 376,630 + +0.3 376,729 - -2.2 376,799 - Atu3342 0.12 -0.1 376,833 - Atu3342 0.16 -0.3 376,859 + Atu3342 0.19 +0.3 376,944 + Atu3342 0.30 -2.1 376,984 + Atu3342 0.35 -2.5 376,985 + Atu3342 0.35 -0.7 376,998 - Atu3342 0.37 -0.3 377,163 + Atu3342 0.58 -2.1 377,171 - Atu3342 0.59 -1.3 377,228 - Atu3342 0.66 -2.5 377,307 - Atu3342 0.76 -1.0 377,393 + Atu3342 0.87 -2.4 377,459 + -1.4 377,461 - -2.3 377,461 - -1.5 377,490 - -1.4 377,618 + Atu3343 0.11 -1.8 377,654 - Atu3343 0.15 -3.5 377,858 - Atu3343 0.34 -3.6 377,894 - Atu3343 0.38 -1.2 377,958 - Atu3343 0.44 -2.6 378,025 + Atu3343 0.50 -1.1 378,075 - Atu3343 0.55 -3.1 378,123 + Atu3343 0.59 -1.7 378,131 - Atu3343 0.60 -2.4 378,131 - Atu3343 0.60 -3.7 378,251 - Atu3343 0.72 -2.1 378,269 + Atu3343 0.73 -1.4 378,273 + Atu3343 0.74 -1.3 378,299 - Atu3343 0.76 -5.2 378,329 + Atu3343 0.79 -3.5
Or see this region's nucleotide sequence