Experiment: Rhamnogalacturonan - from potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3137 and Atu3138 are separated by 143 nucleotides Atu3138 and Atu3139 overlap by 4 nucleotides
Atu3137: Atu3137 - C4-dicarboxylate-binding protein, at 144,986 to 145,963
Atu3137
Atu3138: Atu3138 - hypothetical protein, at 146,107 to 146,985
Atu3138
Atu3139: Atu3139 - hypothetical protein, at 146,982 to 148,118
Atu3139
Position (kb) 146
147 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 145.156 kb on - strand, within Atu3137 at 145.218 kb on - strand, within Atu3137 at 145.280 kb on - strand, within Atu3137 at 145.374 kb on + strand, within Atu3137 at 145.374 kb on + strand, within Atu3137 at 145.418 kb on + strand, within Atu3137 at 145.436 kb on + strand, within Atu3137 at 145.449 kb on - strand, within Atu3137 at 145.556 kb on + strand, within Atu3137 at 145.608 kb on + strand, within Atu3137 at 145.608 kb on + strand, within Atu3137 at 145.740 kb on - strand, within Atu3137 at 145.745 kb on - strand, within Atu3137 at 145.750 kb on - strand, within Atu3137 at 145.785 kb on - strand, within Atu3137 at 145.868 kb on - strand at 145.872 kb on - strand at 145.916 kb on - strand at 145.989 kb on + strand at 146.030 kb on + strand at 146.338 kb on + strand, within Atu3138 at 146.414 kb on - strand, within Atu3138 at 146.531 kb on + strand, within Atu3138 at 146.766 kb on + strand, within Atu3138 at 146.766 kb on + strand, within Atu3138 at 146.779 kb on - strand, within Atu3138 at 146.789 kb on - strand, within Atu3138 at 146.804 kb on - strand, within Atu3138 at 146.804 kb on - strand, within Atu3138 at 146.862 kb on + strand, within Atu3138 at 146.870 kb on - strand, within Atu3138 at 146.952 kb on - strand at 146.995 kb on + strand at 147.077 kb on - strand at 147.113 kb on + strand, within Atu3139 at 147.121 kb on - strand, within Atu3139 at 147.121 kb on - strand, within Atu3139 at 147.182 kb on - strand, within Atu3139 at 147.231 kb on - strand, within Atu3139 at 147.520 kb on + strand, within Atu3139 at 147.526 kb on - strand, within Atu3139 at 147.528 kb on - strand, within Atu3139 at 147.528 kb on - strand, within Atu3139 at 147.528 kb on - strand, within Atu3139 at 147.554 kb on + strand, within Atu3139 at 147.711 kb on - strand, within Atu3139 at 147.720 kb on + strand, within Atu3139 at 147.769 kb on - strand, within Atu3139 at 147.786 kb on - strand, within Atu3139 at 147.792 kb on - strand, within Atu3139 at 147.822 kb on + strand, within Atu3139 at 147.822 kb on + strand, within Atu3139 at 147.822 kb on + strand, within Atu3139 at 147.844 kb on - strand, within Atu3139 at 147.859 kb on - strand, within Atu3139 at 147.866 kb on + strand, within Atu3139 at 147.874 kb on - strand, within Atu3139 at 147.874 kb on - strand, within Atu3139 at 147.935 kb on - strand, within Atu3139 at 147.939 kb on - strand, within Atu3139 at 147.944 kb on - strand, within Atu3139 at 147.975 kb on + strand, within Atu3139
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato (C) remove 145,156 - Atu3137 0.17 -0.5 145,218 - Atu3137 0.24 +0.7 145,280 - Atu3137 0.30 +0.1 145,374 + Atu3137 0.40 -2.9 145,374 + Atu3137 0.40 +1.8 145,418 + Atu3137 0.44 -0.9 145,436 + Atu3137 0.46 +1.0 145,449 - Atu3137 0.47 +0.3 145,556 + Atu3137 0.58 +0.0 145,608 + Atu3137 0.64 -1.5 145,608 + Atu3137 0.64 -0.4 145,740 - Atu3137 0.77 -1.2 145,745 - Atu3137 0.78 -1.7 145,750 - Atu3137 0.78 -1.0 145,785 - Atu3137 0.82 -2.0 145,868 - +0.7 145,872 - -1.0 145,916 - -1.8 145,989 + -0.2 146,030 + +1.4 146,338 + Atu3138 0.26 -4.6 146,414 - Atu3138 0.35 -2.1 146,531 + Atu3138 0.48 -2.3 146,766 + Atu3138 0.75 -4.5 146,766 + Atu3138 0.75 -3.5 146,779 - Atu3138 0.76 -1.4 146,789 - Atu3138 0.78 -0.5 146,804 - Atu3138 0.79 -2.7 146,804 - Atu3138 0.79 -4.7 146,862 + Atu3138 0.86 -2.3 146,870 - Atu3138 0.87 -4.8 146,952 - -2.9 146,995 + -3.7 147,077 - -2.4 147,113 + Atu3139 0.12 -1.1 147,121 - Atu3139 0.12 -4.2 147,121 - Atu3139 0.12 -2.0 147,182 - Atu3139 0.18 -1.3 147,231 - Atu3139 0.22 -1.1 147,520 + Atu3139 0.47 -1.0 147,526 - Atu3139 0.48 -2.5 147,528 - Atu3139 0.48 -3.3 147,528 - Atu3139 0.48 -3.8 147,528 - Atu3139 0.48 -1.3 147,554 + Atu3139 0.50 -2.1 147,711 - Atu3139 0.64 -3.9 147,720 + Atu3139 0.65 -3.5 147,769 - Atu3139 0.69 -4.5 147,786 - Atu3139 0.71 -2.6 147,792 - Atu3139 0.71 -2.5 147,822 + Atu3139 0.74 -4.3 147,822 + Atu3139 0.74 -3.3 147,822 + Atu3139 0.74 -3.8 147,844 - Atu3139 0.76 -2.2 147,859 - Atu3139 0.77 -5.2 147,866 + Atu3139 0.78 -2.2 147,874 - Atu3139 0.78 -2.2 147,874 - Atu3139 0.78 -3.0 147,935 - Atu3139 0.84 -1.8 147,939 - Atu3139 0.84 -2.9 147,944 - Atu3139 0.85 -0.6 147,975 + Atu3139 0.87 -2.7
Or see this region's nucleotide sequence