Strain Fitness in Agrobacterium fabrum C58 around Atu3131

Experiment: Rhamnogalacturonan - from potato (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu3130 and Atu3131 are separated by 43 nucleotidesAtu3131 and Atu3132 are separated by 2 nucleotidesAtu3132 and Atu3133 are separated by 4 nucleotides Atu3130: Atu3130 - sugar ABC transporter substrate-binding protein, at 137,759 to 139,027 Atu3130 Atu3131: Atu3131 - sugar ABC transporter ATPase, at 139,071 to 140,171 Atu3131 Atu3132: Atu3132 - sugar ABC transporter permease, at 140,174 to 141,058 Atu3132 Atu3133: Atu3133 - sugar ABC transporter permease, at 141,063 to 141,944 Atu3133 Position (kb) 139 140 141Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 138.081 kb on - strand, within Atu3130at 138.253 kb on + strand, within Atu3130at 138.261 kb on - strand, within Atu3130at 138.338 kb on - strand, within Atu3130at 138.368 kb on - strand, within Atu3130at 138.488 kb on + strand, within Atu3130at 138.493 kb on - strand, within Atu3130at 138.642 kb on + strand, within Atu3130at 138.720 kb on - strand, within Atu3130at 138.853 kb on - strand, within Atu3130at 138.938 kb on + strandat 139.306 kb on - strand, within Atu3131at 139.358 kb on + strand, within Atu3131at 139.406 kb on - strand, within Atu3131at 139.462 kb on + strand, within Atu3131at 139.512 kb on - strand, within Atu3131at 139.583 kb on - strand, within Atu3131at 139.634 kb on + strand, within Atu3131at 139.692 kb on - strand, within Atu3131at 139.734 kb on + strand, within Atu3131at 139.734 kb on + strand, within Atu3131at 139.762 kb on + strand, within Atu3131at 139.997 kb on - strand, within Atu3131at 140.017 kb on - strand, within Atu3131at 140.052 kb on + strand, within Atu3131at 140.067 kb on - strandat 140.116 kb on + strandat 140.116 kb on + strandat 140.116 kb on + strandat 140.131 kb on + strandat 140.237 kb on + strandat 140.302 kb on - strand, within Atu3132at 140.357 kb on - strand, within Atu3132at 140.423 kb on - strand, within Atu3132at 140.451 kb on + strand, within Atu3132at 140.482 kb on - strand, within Atu3132at 140.580 kb on + strand, within Atu3132at 140.616 kb on - strand, within Atu3132at 140.638 kb on - strand, within Atu3132at 140.680 kb on - strand, within Atu3132at 140.734 kb on - strand, within Atu3132at 140.734 kb on - strand, within Atu3132at 140.747 kb on + strand, within Atu3132at 140.850 kb on - strand, within Atu3132at 140.928 kb on + strand, within Atu3132at 140.950 kb on + strand, within Atu3132at 140.986 kb on - strandat 140.988 kb on + strandat 141.001 kb on + strandat 141.035 kb on + strandat 141.069 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato (C)
remove
138,081 - Atu3130 0.25 -3.2
138,253 + Atu3130 0.39 -0.2
138,261 - Atu3130 0.40 -2.5
138,338 - Atu3130 0.46 -2.2
138,368 - Atu3130 0.48 -2.7
138,488 + Atu3130 0.57 -3.2
138,493 - Atu3130 0.58 -0.4
138,642 + Atu3130 0.70 -1.1
138,720 - Atu3130 0.76 -1.7
138,853 - Atu3130 0.86 -0.4
138,938 + -2.1
139,306 - Atu3131 0.21 -3.6
139,358 + Atu3131 0.26 -2.3
139,406 - Atu3131 0.30 -1.8
139,462 + Atu3131 0.36 -1.8
139,512 - Atu3131 0.40 -1.9
139,583 - Atu3131 0.47 -3.8
139,634 + Atu3131 0.51 -3.1
139,692 - Atu3131 0.56 -1.8
139,734 + Atu3131 0.60 -1.9
139,734 + Atu3131 0.60 -2.9
139,762 + Atu3131 0.63 -2.9
139,997 - Atu3131 0.84 +0.8
140,017 - Atu3131 0.86 -3.3
140,052 + Atu3131 0.89 -1.5
140,067 - -2.7
140,116 + -1.5
140,116 + -3.0
140,116 + -3.1
140,131 + -3.7
140,237 + -1.5
140,302 - Atu3132 0.14 -2.3
140,357 - Atu3132 0.21 -0.5
140,423 - Atu3132 0.28 +0.2
140,451 + Atu3132 0.31 -1.2
140,482 - Atu3132 0.35 -2.9
140,580 + Atu3132 0.46 -3.1
140,616 - Atu3132 0.50 -1.0
140,638 - Atu3132 0.52 -2.0
140,680 - Atu3132 0.57 +0.2
140,734 - Atu3132 0.63 -0.1
140,734 - Atu3132 0.63 -1.5
140,747 + Atu3132 0.65 -2.1
140,850 - Atu3132 0.76 -1.0
140,928 + Atu3132 0.85 -0.5
140,950 + Atu3132 0.88 -0.0
140,986 - -4.2
140,988 + -3.6
141,001 + -1.5
141,035 + -2.6
141,069 - +1.3

Or see this region's nucleotide sequence