Experiment: Rhamnogalacturonan - from potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0841 and Atu0842 are separated by 37 nucleotides Atu0842 and Atu0843 are separated by 163 nucleotides
Atu0841: Atu0841 - hypothetical protein, at 841,513 to 842,478
Atu0841
Atu0842: Atu0842 - hypothetical protein, at 842,516 to 843,304
Atu0842
Atu0843: Atu0843 - P type cation (metal) transporter, ATPase component, at 843,468 to 846,185
Atu0843
Position (kb) 842
843
844 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 841.571 kb on + strand at 841.650 kb on + strand, within Atu0841 at 841.651 kb on - strand, within Atu0841 at 841.672 kb on - strand, within Atu0841 at 841.687 kb on + strand, within Atu0841 at 841.695 kb on - strand, within Atu0841 at 841.716 kb on + strand, within Atu0841 at 841.716 kb on + strand, within Atu0841 at 841.724 kb on - strand, within Atu0841 at 841.847 kb on + strand, within Atu0841 at 841.932 kb on + strand, within Atu0841 at 842.167 kb on + strand, within Atu0841 at 842.167 kb on + strand, within Atu0841 at 842.196 kb on + strand, within Atu0841 at 842.209 kb on - strand, within Atu0841 at 842.237 kb on + strand, within Atu0841 at 842.318 kb on + strand, within Atu0841 at 842.326 kb on - strand, within Atu0841 at 842.326 kb on - strand, within Atu0841 at 842.326 kb on - strand, within Atu0841 at 842.440 kb on + strand at 842.506 kb on - strand at 842.522 kb on - strand at 842.777 kb on - strand, within Atu0842 at 843.005 kb on + strand, within Atu0842 at 843.055 kb on + strand, within Atu0842 at 843.268 kb on + strand at 843.298 kb on + strand at 843.502 kb on + strand at 843.508 kb on + strand at 843.589 kb on + strand at 843.597 kb on - strand at 843.752 kb on - strand, within Atu0843 at 843.814 kb on - strand, within Atu0843 at 843.879 kb on + strand, within Atu0843 at 843.881 kb on + strand, within Atu0843 at 843.888 kb on + strand, within Atu0843 at 843.895 kb on - strand, within Atu0843 at 843.970 kb on + strand, within Atu0843 at 843.993 kb on + strand, within Atu0843 at 844.036 kb on + strand, within Atu0843 at 844.071 kb on + strand, within Atu0843 at 844.165 kb on + strand, within Atu0843 at 844.168 kb on + strand, within Atu0843 at 844.213 kb on - strand, within Atu0843
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato (C) remove 841,571 + -0.1 841,650 + Atu0841 0.14 +1.8 841,651 - Atu0841 0.14 -0.1 841,672 - Atu0841 0.16 +0.1 841,687 + Atu0841 0.18 -0.0 841,695 - Atu0841 0.19 +0.6 841,716 + Atu0841 0.21 -0.9 841,716 + Atu0841 0.21 -0.8 841,724 - Atu0841 0.22 -1.6 841,847 + Atu0841 0.35 +0.8 841,932 + Atu0841 0.43 -2.6 842,167 + Atu0841 0.68 +0.5 842,167 + Atu0841 0.68 -0.4 842,196 + Atu0841 0.71 -0.8 842,209 - Atu0841 0.72 +0.4 842,237 + Atu0841 0.75 +0.3 842,318 + Atu0841 0.83 -0.5 842,326 - Atu0841 0.84 +1.2 842,326 - Atu0841 0.84 -0.5 842,326 - Atu0841 0.84 -0.2 842,440 + +0.5 842,506 - +0.3 842,522 - -0.6 842,777 - Atu0842 0.33 -1.5 843,005 + Atu0842 0.62 -0.8 843,055 + Atu0842 0.68 -1.7 843,268 + -1.0 843,298 + -0.9 843,502 + -0.2 843,508 + -0.7 843,589 + +0.9 843,597 - -0.5 843,752 - Atu0843 0.10 +0.1 843,814 - Atu0843 0.13 +2.4 843,879 + Atu0843 0.15 +0.4 843,881 + Atu0843 0.15 -0.0 843,888 + Atu0843 0.15 +0.7 843,895 - Atu0843 0.16 +0.1 843,970 + Atu0843 0.18 -0.2 843,993 + Atu0843 0.19 -1.8 844,036 + Atu0843 0.21 -0.7 844,071 + Atu0843 0.22 +1.1 844,165 + Atu0843 0.26 +0.2 844,168 + Atu0843 0.26 -0.6 844,213 - Atu0843 0.27 -2.9
Or see this region's nucleotide sequence