Experiment: Rhamnogalacturonan - from potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0486 and Atu8129 are separated by 36 nucleotides Atu8129 and Atu0488 are separated by 1 nucleotides Atu0488 and Atu0489 are separated by 274 nucleotides
Atu0486: Atu0486 - dihydroorotate dehydrogenase, at 474,266 to 475,357
Atu0486
Atu8129: Atu8129 - hypothetical protein, at 475,394 to 475,891
Atu8129
Atu0488: Atu0488 - hypothetical protein, at 475,893 to 476,159
Atu0488
Atu0489: Atu0489 - methyltransferase, at 476,434 to 477,270
Atu0489
Position (kb) 475
476
477 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 474.904 kb on + strand, within Atu0486 at 474.904 kb on + strand, within Atu0486 at 474.944 kb on - strand, within Atu0486 at 475.302 kb on + strand at 475.310 kb on - strand at 475.372 kb on + strand at 475.509 kb on - strand, within Atu8129 at 475.517 kb on + strand, within Atu8129 at 475.531 kb on + strand, within Atu8129 at 475.539 kb on - strand, within Atu8129 at 475.539 kb on - strand, within Atu8129 at 475.544 kb on - strand, within Atu8129 at 475.559 kb on + strand, within Atu8129 at 475.589 kb on - strand, within Atu8129 at 475.640 kb on + strand, within Atu8129 at 475.667 kb on - strand, within Atu8129 at 475.711 kb on + strand, within Atu8129 at 475.720 kb on + strand, within Atu8129 at 475.738 kb on - strand, within Atu8129 at 475.738 kb on - strand, within Atu8129 at 475.764 kb on - strand, within Atu8129 at 475.776 kb on - strand, within Atu8129 at 475.776 kb on - strand, within Atu8129 at 475.791 kb on + strand, within Atu8129 at 475.793 kb on - strand, within Atu8129 at 475.799 kb on - strand, within Atu8129 at 475.876 kb on - strand at 475.956 kb on + strand, within Atu0488 at 476.121 kb on - strand, within Atu0488 at 476.125 kb on + strand, within Atu0488 at 476.131 kb on - strand, within Atu0488 at 476.191 kb on - strand at 476.191 kb on - strand at 476.193 kb on - strand at 476.223 kb on + strand at 476.225 kb on + strand at 476.410 kb on + strand at 476.604 kb on - strand, within Atu0489 at 476.623 kb on - strand, within Atu0489 at 476.634 kb on - strand, within Atu0489 at 476.647 kb on - strand, within Atu0489 at 476.647 kb on - strand, within Atu0489 at 476.700 kb on + strand, within Atu0489 at 476.767 kb on - strand, within Atu0489 at 476.832 kb on + strand, within Atu0489 at 476.865 kb on + strand, within Atu0489 at 476.943 kb on + strand, within Atu0489 at 477.014 kb on + strand, within Atu0489 at 477.038 kb on + strand, within Atu0489 at 477.048 kb on + strand, within Atu0489 at 477.048 kb on + strand, within Atu0489
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato (C) remove 474,904 + Atu0486 0.58 -1.8 474,904 + Atu0486 0.58 -2.5 474,944 - Atu0486 0.62 -2.8 475,302 + -3.1 475,310 - +0.0 475,372 + +1.1 475,509 - Atu8129 0.23 +0.4 475,517 + Atu8129 0.25 +0.9 475,531 + Atu8129 0.28 +0.5 475,539 - Atu8129 0.29 +1.6 475,539 - Atu8129 0.29 -0.4 475,544 - Atu8129 0.30 +1.6 475,559 + Atu8129 0.33 -0.4 475,589 - Atu8129 0.39 -1.9 475,640 + Atu8129 0.49 -0.4 475,667 - Atu8129 0.55 -1.0 475,711 + Atu8129 0.64 -1.4 475,720 + Atu8129 0.65 -0.4 475,738 - Atu8129 0.69 +0.9 475,738 - Atu8129 0.69 +0.2 475,764 - Atu8129 0.74 +0.6 475,776 - Atu8129 0.77 -0.3 475,776 - Atu8129 0.77 -0.0 475,791 + Atu8129 0.80 -0.7 475,793 - Atu8129 0.80 -0.3 475,799 - Atu8129 0.81 -1.5 475,876 - +0.6 475,956 + Atu0488 0.24 -0.2 476,121 - Atu0488 0.85 -0.6 476,125 + Atu0488 0.87 -0.9 476,131 - Atu0488 0.89 -1.3 476,191 - -0.1 476,191 - -0.7 476,193 - -1.9 476,223 + +0.2 476,225 + +0.3 476,410 + -0.5 476,604 - Atu0489 0.20 -0.1 476,623 - Atu0489 0.23 +1.3 476,634 - Atu0489 0.24 +1.5 476,647 - Atu0489 0.25 +1.1 476,647 - Atu0489 0.25 +0.8 476,700 + Atu0489 0.32 +0.1 476,767 - Atu0489 0.40 +0.0 476,832 + Atu0489 0.48 +0.6 476,865 + Atu0489 0.51 -0.9 476,943 + Atu0489 0.61 -0.4 477,014 + Atu0489 0.69 -0.1 477,038 + Atu0489 0.72 -0.1 477,048 + Atu0489 0.73 +0.3 477,048 + Atu0489 0.73 +0.6
Or see this region's nucleotide sequence