Experiment: Rhamnogalacturonan - from potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0187 and Atu0188 are separated by 141 nucleotides Atu0188 and Atu0189 overlap by 1 nucleotides
Atu0187: Atu0187 - ABC transporter, substrate binding protein (peptide), at 189,528 to 191,372
Atu0187
Atu0188: Atu0188 - ABC transporter, membrane spanning protein (peptide), at 191,514 to 192,608
Atu0188
Atu0189: Atu0189 - ABC transporter, membrane spanning protein (peptide), at 192,608 to 193,753
Atu0189
Position (kb) 191
192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 190.571 kb on - strand, within Atu0187 at 190.600 kb on - strand, within Atu0187 at 190.743 kb on + strand, within Atu0187 at 190.743 kb on + strand, within Atu0187 at 190.878 kb on + strand, within Atu0187 at 190.918 kb on + strand, within Atu0187 at 190.977 kb on + strand, within Atu0187 at 190.992 kb on - strand, within Atu0187 at 191.001 kb on - strand, within Atu0187 at 191.044 kb on - strand, within Atu0187 at 191.237 kb on + strand at 191.237 kb on + strand at 191.245 kb on - strand at 191.245 kb on - strand at 191.301 kb on - strand at 191.361 kb on + strand at 191.505 kb on - strand at 191.544 kb on - strand at 191.669 kb on + strand, within Atu0188 at 191.760 kb on - strand, within Atu0188 at 191.937 kb on - strand, within Atu0188 at 192.427 kb on - strand, within Atu0188 at 192.507 kb on + strand at 192.633 kb on + strand at 192.649 kb on + strand at 192.685 kb on - strand at 192.716 kb on + strand at 192.959 kb on - strand, within Atu0189
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato (C) remove 190,571 - Atu0187 0.57 -0.1 190,600 - Atu0187 0.58 +0.5 190,743 + Atu0187 0.66 +0.4 190,743 + Atu0187 0.66 +0.2 190,878 + Atu0187 0.73 +0.4 190,918 + Atu0187 0.75 +0.6 190,977 + Atu0187 0.79 -0.4 190,992 - Atu0187 0.79 +0.9 191,001 - Atu0187 0.80 +0.3 191,044 - Atu0187 0.82 +0.6 191,237 + -2.8 191,237 + +1.5 191,245 - +0.5 191,245 - -0.6 191,301 - -0.1 191,361 + +0.4 191,505 - -0.1 191,544 - -1.8 191,669 + Atu0188 0.14 -0.9 191,760 - Atu0188 0.22 -0.6 191,937 - Atu0188 0.39 -0.8 192,427 - Atu0188 0.83 -2.4 192,507 + -0.0 192,633 + -0.6 192,649 + -0.8 192,685 - -0.8 192,716 + +1.0 192,959 - Atu0189 0.31 -1.1
Or see this region's nucleotide sequence