Strain Fitness in Agrobacterium fabrum C58 around Atu0091

Experiment: Rhamnogalacturonan - from potato (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0090 and Atu0091 are separated by 405 nucleotidesAtu0091 and Atu0092 are separated by 22 nucleotides Atu0090: Atu0090 - hypothetical protein, at 93,972 to 94,568 Atu0090 Atu0091: Atu0091 - MFS permease, at 94,974 to 96,485 Atu0091 Atu0092: Atu0092 - lytic murein transglycosylase, at 96,508 to 97,773 Atu0092 Position (kb) 94 95 96 97Strain fitness (log2 ratio) -3 -2 -1 0 1at 94.718 kb on - strandat 94.741 kb on - strandat 94.808 kb on + strandat 94.816 kb on - strandat 94.861 kb on - strandat 94.910 kb on + strandat 95.029 kb on - strandat 95.040 kb on + strandat 95.065 kb on - strandat 95.225 kb on + strand, within Atu0091at 95.225 kb on + strand, within Atu0091at 95.225 kb on + strand, within Atu0091at 95.252 kb on - strand, within Atu0091at 95.404 kb on + strand, within Atu0091at 95.422 kb on - strand, within Atu0091at 95.422 kb on - strand, within Atu0091at 95.535 kb on + strand, within Atu0091at 95.535 kb on + strand, within Atu0091at 95.547 kb on + strand, within Atu0091at 95.586 kb on - strand, within Atu0091at 95.610 kb on - strand, within Atu0091at 95.620 kb on - strand, within Atu0091at 95.645 kb on + strand, within Atu0091at 95.654 kb on - strand, within Atu0091at 95.919 kb on - strand, within Atu0091at 95.931 kb on - strand, within Atu0091at 95.951 kb on + strand, within Atu0091at 95.951 kb on + strand, within Atu0091at 96.009 kb on - strand, within Atu0091at 96.073 kb on + strand, within Atu0091at 96.073 kb on + strand, within Atu0091at 96.118 kb on + strand, within Atu0091at 96.126 kb on - strand, within Atu0091at 96.172 kb on + strand, within Atu0091at 96.252 kb on - strand, within Atu0091at 96.332 kb on - strand, within Atu0091at 96.368 kb on - strandat 96.411 kb on + strandat 96.464 kb on + strandat 96.477 kb on - strandat 96.581 kb on - strandat 96.581 kb on - strandat 96.632 kb on + strandat 96.640 kb on - strand, within Atu0092at 96.654 kb on - strand, within Atu0092at 96.679 kb on + strand, within Atu0092at 96.679 kb on + strand, within Atu0092at 96.718 kb on - strand, within Atu0092at 96.728 kb on - strand, within Atu0092at 96.755 kb on + strand, within Atu0092at 96.767 kb on + strand, within Atu0092at 96.826 kb on + strand, within Atu0092at 96.876 kb on + strand, within Atu0092at 96.939 kb on - strand, within Atu0092at 96.946 kb on + strand, within Atu0092at 96.946 kb on + strand, within Atu0092at 96.951 kb on + strand, within Atu0092at 96.954 kb on - strand, within Atu0092at 96.954 kb on - strand, within Atu0092at 96.959 kb on - strand, within Atu0092at 96.959 kb on - strand, within Atu0092at 97.035 kb on + strand, within Atu0092at 97.035 kb on + strand, within Atu0092at 97.113 kb on - strand, within Atu0092at 97.216 kb on - strand, within Atu0092at 97.217 kb on + strand, within Atu0092at 97.241 kb on + strand, within Atu0092at 97.398 kb on + strand, within Atu0092at 97.406 kb on - strand, within Atu0092at 97.406 kb on - strand, within Atu0092at 97.443 kb on + strand, within Atu0092

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato (C)
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94,718 - +0.2
94,741 - +0.1
94,808 + -0.8
94,816 - -0.9
94,861 - -1.7
94,910 + -0.1
95,029 - +0.4
95,040 + -1.3
95,065 - -1.5
95,225 + Atu0091 0.17 -1.5
95,225 + Atu0091 0.17 -1.3
95,225 + Atu0091 0.17 -1.9
95,252 - Atu0091 0.18 -0.0
95,404 + Atu0091 0.28 +0.1
95,422 - Atu0091 0.30 -0.4
95,422 - Atu0091 0.30 -0.6
95,535 + Atu0091 0.37 +0.8
95,535 + Atu0091 0.37 -0.0
95,547 + Atu0091 0.38 -0.7
95,586 - Atu0091 0.40 -0.7
95,610 - Atu0091 0.42 -0.8
95,620 - Atu0091 0.43 -0.7
95,645 + Atu0091 0.44 -2.1
95,654 - Atu0091 0.45 -2.5
95,919 - Atu0091 0.62 -2.2
95,931 - Atu0091 0.63 -1.0
95,951 + Atu0091 0.65 -1.3
95,951 + Atu0091 0.65 -2.9
96,009 - Atu0091 0.68 -2.7
96,073 + Atu0091 0.73 -1.0
96,073 + Atu0091 0.73 -0.7
96,118 + Atu0091 0.76 -0.6
96,126 - Atu0091 0.76 +1.4
96,172 + Atu0091 0.79 -1.1
96,252 - Atu0091 0.85 -0.5
96,332 - Atu0091 0.90 -1.4
96,368 - -0.6
96,411 + -0.8
96,464 + +0.5
96,477 - -0.4
96,581 - -1.4
96,581 - +0.2
96,632 + -1.0
96,640 - Atu0092 0.10 +0.2
96,654 - Atu0092 0.12 -1.0
96,679 + Atu0092 0.14 -0.8
96,679 + Atu0092 0.14 +0.4
96,718 - Atu0092 0.17 +1.1
96,728 - Atu0092 0.17 -0.7
96,755 + Atu0092 0.20 +1.0
96,767 + Atu0092 0.20 +0.2
96,826 + Atu0092 0.25 +0.2
96,876 + Atu0092 0.29 +0.8
96,939 - Atu0092 0.34 -0.7
96,946 + Atu0092 0.35 +0.6
96,946 + Atu0092 0.35 +0.6
96,951 + Atu0092 0.35 +0.2
96,954 - Atu0092 0.35 +0.5
96,954 - Atu0092 0.35 -2.4
96,959 - Atu0092 0.36 -0.3
96,959 - Atu0092 0.36 +0.3
97,035 + Atu0092 0.42 -0.4
97,035 + Atu0092 0.42 -0.3
97,113 - Atu0092 0.48 +0.1
97,216 - Atu0092 0.56 +0.2
97,217 + Atu0092 0.56 -0.8
97,241 + Atu0092 0.58 -0.3
97,398 + Atu0092 0.70 +0.5
97,406 - Atu0092 0.71 -0.3
97,406 - Atu0092 0.71 -0.5
97,443 + Atu0092 0.74 +0.1

Or see this region's nucleotide sequence