Experiment: Rhamnogalacturonan - from potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0090 and Atu0091 are separated by 405 nucleotides Atu0091 and Atu0092 are separated by 22 nucleotides
Atu0090: Atu0090 - hypothetical protein, at 93,972 to 94,568
Atu0090
Atu0091: Atu0091 - MFS permease, at 94,974 to 96,485
Atu0091
Atu0092: Atu0092 - lytic murein transglycosylase, at 96,508 to 97,773
Atu0092
Position (kb) 94
95
96
97 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 94.718 kb on - strand at 94.741 kb on - strand at 94.808 kb on + strand at 94.816 kb on - strand at 94.861 kb on - strand at 94.910 kb on + strand at 95.029 kb on - strand at 95.040 kb on + strand at 95.065 kb on - strand at 95.225 kb on + strand, within Atu0091 at 95.225 kb on + strand, within Atu0091 at 95.225 kb on + strand, within Atu0091 at 95.252 kb on - strand, within Atu0091 at 95.404 kb on + strand, within Atu0091 at 95.422 kb on - strand, within Atu0091 at 95.422 kb on - strand, within Atu0091 at 95.535 kb on + strand, within Atu0091 at 95.535 kb on + strand, within Atu0091 at 95.547 kb on + strand, within Atu0091 at 95.586 kb on - strand, within Atu0091 at 95.610 kb on - strand, within Atu0091 at 95.620 kb on - strand, within Atu0091 at 95.645 kb on + strand, within Atu0091 at 95.654 kb on - strand, within Atu0091 at 95.919 kb on - strand, within Atu0091 at 95.931 kb on - strand, within Atu0091 at 95.951 kb on + strand, within Atu0091 at 95.951 kb on + strand, within Atu0091 at 96.009 kb on - strand, within Atu0091 at 96.073 kb on + strand, within Atu0091 at 96.073 kb on + strand, within Atu0091 at 96.118 kb on + strand, within Atu0091 at 96.126 kb on - strand, within Atu0091 at 96.172 kb on + strand, within Atu0091 at 96.252 kb on - strand, within Atu0091 at 96.332 kb on - strand, within Atu0091 at 96.368 kb on - strand at 96.411 kb on + strand at 96.464 kb on + strand at 96.477 kb on - strand at 96.581 kb on - strand at 96.581 kb on - strand at 96.632 kb on + strand at 96.640 kb on - strand, within Atu0092 at 96.654 kb on - strand, within Atu0092 at 96.679 kb on + strand, within Atu0092 at 96.679 kb on + strand, within Atu0092 at 96.718 kb on - strand, within Atu0092 at 96.728 kb on - strand, within Atu0092 at 96.755 kb on + strand, within Atu0092 at 96.767 kb on + strand, within Atu0092 at 96.826 kb on + strand, within Atu0092 at 96.876 kb on + strand, within Atu0092 at 96.939 kb on - strand, within Atu0092 at 96.946 kb on + strand, within Atu0092 at 96.946 kb on + strand, within Atu0092 at 96.951 kb on + strand, within Atu0092 at 96.954 kb on - strand, within Atu0092 at 96.954 kb on - strand, within Atu0092 at 96.959 kb on - strand, within Atu0092 at 96.959 kb on - strand, within Atu0092 at 97.035 kb on + strand, within Atu0092 at 97.035 kb on + strand, within Atu0092 at 97.113 kb on - strand, within Atu0092 at 97.216 kb on - strand, within Atu0092 at 97.217 kb on + strand, within Atu0092 at 97.241 kb on + strand, within Atu0092 at 97.398 kb on + strand, within Atu0092 at 97.406 kb on - strand, within Atu0092 at 97.406 kb on - strand, within Atu0092 at 97.443 kb on + strand, within Atu0092
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato (C) remove 94,718 - +0.2 94,741 - +0.1 94,808 + -0.8 94,816 - -0.9 94,861 - -1.7 94,910 + -0.1 95,029 - +0.4 95,040 + -1.3 95,065 - -1.5 95,225 + Atu0091 0.17 -1.5 95,225 + Atu0091 0.17 -1.3 95,225 + Atu0091 0.17 -1.9 95,252 - Atu0091 0.18 -0.0 95,404 + Atu0091 0.28 +0.1 95,422 - Atu0091 0.30 -0.4 95,422 - Atu0091 0.30 -0.6 95,535 + Atu0091 0.37 +0.8 95,535 + Atu0091 0.37 -0.0 95,547 + Atu0091 0.38 -0.7 95,586 - Atu0091 0.40 -0.7 95,610 - Atu0091 0.42 -0.8 95,620 - Atu0091 0.43 -0.7 95,645 + Atu0091 0.44 -2.1 95,654 - Atu0091 0.45 -2.5 95,919 - Atu0091 0.62 -2.2 95,931 - Atu0091 0.63 -1.0 95,951 + Atu0091 0.65 -1.3 95,951 + Atu0091 0.65 -2.9 96,009 - Atu0091 0.68 -2.7 96,073 + Atu0091 0.73 -1.0 96,073 + Atu0091 0.73 -0.7 96,118 + Atu0091 0.76 -0.6 96,126 - Atu0091 0.76 +1.4 96,172 + Atu0091 0.79 -1.1 96,252 - Atu0091 0.85 -0.5 96,332 - Atu0091 0.90 -1.4 96,368 - -0.6 96,411 + -0.8 96,464 + +0.5 96,477 - -0.4 96,581 - -1.4 96,581 - +0.2 96,632 + -1.0 96,640 - Atu0092 0.10 +0.2 96,654 - Atu0092 0.12 -1.0 96,679 + Atu0092 0.14 -0.8 96,679 + Atu0092 0.14 +0.4 96,718 - Atu0092 0.17 +1.1 96,728 - Atu0092 0.17 -0.7 96,755 + Atu0092 0.20 +1.0 96,767 + Atu0092 0.20 +0.2 96,826 + Atu0092 0.25 +0.2 96,876 + Atu0092 0.29 +0.8 96,939 - Atu0092 0.34 -0.7 96,946 + Atu0092 0.35 +0.6 96,946 + Atu0092 0.35 +0.6 96,951 + Atu0092 0.35 +0.2 96,954 - Atu0092 0.35 +0.5 96,954 - Atu0092 0.35 -2.4 96,959 - Atu0092 0.36 -0.3 96,959 - Atu0092 0.36 +0.3 97,035 + Atu0092 0.42 -0.4 97,035 + Atu0092 0.42 -0.3 97,113 - Atu0092 0.48 +0.1 97,216 - Atu0092 0.56 +0.2 97,217 + Atu0092 0.56 -0.8 97,241 + Atu0092 0.58 -0.3 97,398 + Atu0092 0.70 +0.5 97,406 - Atu0092 0.71 -0.3 97,406 - Atu0092 0.71 -0.5 97,443 + Atu0092 0.74 +0.1
Or see this region's nucleotide sequence