Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4700 and Psyr_4701 are separated by 66 nucleotides Psyr_4701 and Psyr_4702 are separated by 231 nucleotides
Psyr_4700: Psyr_4700 - malate synthase, at 5,569,094 to 5,571,271
_4700
Psyr_4701: Psyr_4701 - Response regulator receiver, at 5,571,338 to 5,571,784
_4701
Psyr_4702: Psyr_4702 - Cyclic nucleotide-binding:CBS:Putative nucleotidyltransferase DUF294, at 5,572,016 to 5,573,950
_4702
Position (kb) 5571
5572 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5570.344 kb on - strand, within Psyr_4700 at 5570.344 kb on - strand, within Psyr_4700 at 5570.909 kb on + strand, within Psyr_4700 at 5570.909 kb on + strand, within Psyr_4700 at 5570.913 kb on + strand, within Psyr_4700 at 5570.913 kb on + strand, within Psyr_4700 at 5570.913 kb on + strand, within Psyr_4700 at 5570.913 kb on + strand, within Psyr_4700 at 5570.913 kb on + strand, within Psyr_4700 at 5570.914 kb on - strand, within Psyr_4700 at 5570.914 kb on - strand, within Psyr_4700 at 5570.914 kb on - strand, within Psyr_4700 at 5570.914 kb on - strand, within Psyr_4700 at 5570.914 kb on - strand, within Psyr_4700 at 5571.122 kb on + strand at 5571.269 kb on + strand at 5571.270 kb on - strand at 5571.270 kb on - strand at 5571.344 kb on + strand at 5571.344 kb on + strand at 5571.386 kb on - strand, within Psyr_4701 at 5571.769 kb on + strand at 5571.770 kb on - strand at 5571.770 kb on - strand at 5571.824 kb on - strand at 5571.947 kb on + strand at 5571.947 kb on + strand at 5571.947 kb on + strand at 5571.947 kb on + strand at 5571.948 kb on - strand at 5571.948 kb on - strand at 5571.948 kb on - strand at 5571.948 kb on - strand at 5571.995 kb on - strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.140 kb on - strand at 5572.223 kb on + strand, within Psyr_4702 at 5572.223 kb on + strand, within Psyr_4702 at 5572.223 kb on + strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.299 kb on + strand, within Psyr_4702 at 5572.639 kb on - strand, within Psyr_4702
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 5,570,344 - Psyr_4700 0.57 -1.5 5,570,344 - Psyr_4700 0.57 +1.3 5,570,909 + Psyr_4700 0.83 +1.4 5,570,909 + Psyr_4700 0.83 +1.1 5,570,913 + Psyr_4700 0.84 +0.7 5,570,913 + Psyr_4700 0.84 -0.8 5,570,913 + Psyr_4700 0.84 -3.5 5,570,913 + Psyr_4700 0.84 +0.1 5,570,913 + Psyr_4700 0.84 -1.4 5,570,914 - Psyr_4700 0.84 +1.2 5,570,914 - Psyr_4700 0.84 +1.9 5,570,914 - Psyr_4700 0.84 -3.4 5,570,914 - Psyr_4700 0.84 +0.1 5,570,914 - Psyr_4700 0.84 -3.0 5,571,122 + -0.3 5,571,269 + +0.3 5,571,270 - -3.1 5,571,270 - +1.2 5,571,344 + -1.8 5,571,344 + +0.4 5,571,386 - Psyr_4701 0.11 -0.6 5,571,769 + -0.8 5,571,770 - +0.2 5,571,770 - -0.2 5,571,824 - +1.9 5,571,947 + -0.1 5,571,947 + +0.1 5,571,947 + -1.3 5,571,947 + -0.2 5,571,948 - -0.5 5,571,948 - +0.2 5,571,948 - -0.6 5,571,948 - -0.2 5,571,995 - -0.6 5,572,071 + +0.0 5,572,071 + -1.3 5,572,071 + -0.9 5,572,071 + -0.3 5,572,071 + -1.9 5,572,071 + +0.4 5,572,071 + +0.5 5,572,071 + -1.3 5,572,071 + -0.5 5,572,071 + -0.2 5,572,072 - +0.6 5,572,072 - -1.5 5,572,140 - -0.8 5,572,223 + Psyr_4702 0.11 +1.9 5,572,223 + Psyr_4702 0.11 -1.2 5,572,223 + Psyr_4702 0.11 +0.4 5,572,224 - Psyr_4702 0.11 +1.7 5,572,224 - Psyr_4702 0.11 -1.5 5,572,224 - Psyr_4702 0.11 -0.0 5,572,224 - Psyr_4702 0.11 +1.5 5,572,299 + Psyr_4702 0.15 +2.0 5,572,639 - Psyr_4702 0.32 -0.2
Or see this region's nucleotide sequence