Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4353

Experiment: apoplastic, chopping recovery; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4352 and Psyr_4353 are separated by 89 nucleotidesPsyr_4353 and Psyr_4354 are separated by 41 nucleotides Psyr_4352: Psyr_4352 - leucyl-tRNA synthetase, at 5,205,329 to 5,207,935 _4352 Psyr_4353: Psyr_4353 - Rare lipoprotein B, at 5,208,025 to 5,208,630 _4353 Psyr_4354: Psyr_4354 - DNA polymerase III, delta subunit, at 5,208,672 to 5,209,709 _4354 Position (kb) 5208 5209Strain fitness (log2 ratio) -2 -1 0 1at 5207.973 kb on + strandat 5208.628 kb on + strandat 5208.628 kb on + strandat 5208.628 kb on + strandat 5208.628 kb on + strandat 5208.628 kb on + strandat 5208.628 kb on + strandat 5208.628 kb on + strandat 5208.628 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean
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5,207,973 + -2.2
5,208,628 + -2.6
5,208,628 + +0.8
5,208,628 + -0.5
5,208,628 + -1.5
5,208,628 + -0.3
5,208,628 + +1.0
5,208,628 + +0.5
5,208,628 + +0.9

Or see this region's nucleotide sequence