Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1265

Experiment: apoplastic, chopping recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, chopping recovery; Green bean
1,426,727	+		Psyr_1264	0.14	-0.2
1,427,013	+		Psyr_1264	0.73	+0.6
1,427,014	-		Psyr_1264	0.73	+0.6
1,427,015	+		Psyr_1264	0.73	+0.1
1,427,109	+				-0.2
1,427,109	+				+0.3
1,427,186	-				+0.1
1,427,205	+				+0.6
1,427,205	+				-2.0
1,427,206	-				-1.8
1,427,221	+				-0.5
1,427,222	-				+0.9
1,427,329	+				-2.2
1,427,329	+				+0.7
1,427,330	-				+0.5
1,427,330	-				-0.5
1,427,330	-				-1.0
1,427,333	+				+1.4
1,427,333	+				-1.3
1,427,334	-				-2.3
1,427,334	-				+1.2
1,427,334	-				-0.2
1,427,334	-				+1.1
1,427,438	+				-0.7
1,427,438	+				-1.9
1,427,439	-				+1.0
1,427,439	-				+2.3
1,427,444	+				+0.4
1,427,444	+				+0.8
1,427,444	+				-0.4
1,427,444	+				-1.5
1,427,445	-				-1.9
1,427,445	-				-1.5
1,427,445	-				-0.1
1,427,445	-				+2.1
1,427,445	-				-1.0
1,427,445	-				-1.0
1,427,447	+				+0.2
1,427,447	+				+1.2
1,427,447	+				+0.5
1,427,448	-				+1.3
1,427,448	-				-0.4
1,427,448	-				-2.0
1,427,448	-				-1.5
1,427,448	-				-1.5
1,427,452	+				+3.6
1,427,453	-				+0.7
1,427,453	-				+0.6
1,427,479	+				+1.0
1,427,479	+				-2.1
1,427,479	+				+2.2
1,427,479	+				+0.8
1,427,480	-				-3.7
1,427,480	-				+0.8
1,427,480	-				+2.0
1,427,480	-				-0.2
1,427,480	-				+0.7
1,427,519	-				-1.8
1,427,520	+				-0.5
1,427,521	-				-0.5
1,427,521	-				-1.2
1,427,521	-				-3.1
1,427,521	-				+0.5
1,427,521	-				+0.2
1,427,521	-				-2.3
1,427,544	+				+1.9
1,427,544	+				-0.5
1,427,545	-				+0.1
1,427,595	-				+1.0
1,427,595	-				+0.3
1,427,595	-				-0.4
1,427,595	-				+0.2
1,427,651	+				-0.4
1,427,651	+				+1.0
1,427,666	+				+0.6
1,427,666	+				+0.2
1,427,666	+				-0.8
1,427,667	-				+0.6
1,427,667	-				+0.6
1,427,667	-				+0.9
1,427,667	-				-2.1
1,427,709	+				-1.3
1,427,718	+				+0.3
1,427,731	+				-0.8
1,427,732	-				+2.0
1,427,732	-				+2.5
1,427,732	-				+1.2
1,427,811	+		Psyr_1265	0.11	-0.4
1,427,811	+		Psyr_1265	0.11	+1.8
1,427,811	+		Psyr_1265	0.11	-3.5
1,427,812	-		Psyr_1265	0.11	+0.1
1,427,812	-		Psyr_1265	0.11	+0.1
1,427,812	-		Psyr_1265	0.11	+1.6
1,427,812	-		Psyr_1265	0.11	+0.7
1,427,818	+		Psyr_1265	0.11	-2.8
1,427,818	+		Psyr_1265	0.11	-1.3
1,427,818	+		Psyr_1265	0.11	+0.2
1,427,910	+		Psyr_1265	0.16	-0.1
1,427,910	+		Psyr_1265	0.16	+1.3
1,427,910	+		Psyr_1265	0.16	-0.3
1,427,910	+		Psyr_1265	0.16	-0.5
1,427,910	+		Psyr_1265	0.16	-1.8
1,427,910	+		Psyr_1265	0.16	+1.3
1,427,911	-		Psyr_1265	0.16	-0.5
1,427,911	-		Psyr_1265	0.16	+1.0
1,427,911	-		Psyr_1265	0.16	-1.1
1,428,162	+		Psyr_1265	0.29	-0.5
1,428,175	+		Psyr_1265	0.29	-0.2
1,428,235	-		Psyr_1265	0.32	+0.3
1,428,235	-		Psyr_1265	0.32	-0.8
1,428,235	-		Psyr_1265	0.32	+0.9
1,428,235	-		Psyr_1265	0.32	+2.5
1,428,273	+		Psyr_1265	0.34	+2.6
1,428,273	+		Psyr_1265	0.34	-1.5
1,428,273	+		Psyr_1265	0.34	+0.8
1,428,274	-		Psyr_1265	0.34	+1.6
1,428,274	-		Psyr_1265	0.34	-0.2
1,428,274	-		Psyr_1265	0.34	+1.5
1,428,274	-		Psyr_1265	0.34	+0.7
1,428,274	-		Psyr_1265	0.34	-1.0
1,428,387	+		Psyr_1265	0.40	-1.2
1,428,387	+		Psyr_1265	0.40	+0.2
1,428,387	+		Psyr_1265	0.40	+0.3
1,428,388	-		Psyr_1265	0.40	+0.1
1,428,388	-		Psyr_1265	0.40	-0.8
1,428,479	+		Psyr_1265	0.45	+1.0
1,428,489	+		Psyr_1265	0.45	+2.8
1,428,489	+		Psyr_1265	0.45	+0.0
1,428,489	+		Psyr_1265	0.45	-3.5
1,428,489	+		Psyr_1265	0.45	-0.2
1,428,489	+		Psyr_1265	0.45	-0.7
1,428,489	+		Psyr_1265	0.45	+2.3
1,428,489	+		Psyr_1265	0.45	+0.2
1,428,490	-		Psyr_1265	0.45	+0.4
1,428,490	-		Psyr_1265	0.45	-0.0
1,428,490	-		Psyr_1265	0.45	-0.5
1,428,490	-		Psyr_1265	0.45	-0.5
1,428,490	-		Psyr_1265	0.45	-1.8
1,428,490	-		Psyr_1265	0.45	+1.4
1,428,490	-		Psyr_1265	0.45	+0.9
1,428,490	-		Psyr_1265	0.45	-1.9
1,428,608	+		Psyr_1265	0.51	+1.2
1,428,609	-		Psyr_1265	0.51	-2.4
1,428,774	+		Psyr_1265	0.60	-1.0
1,428,776	+		Psyr_1265	0.60	+0.6
1,428,776	+		Psyr_1265	0.60	-0.8
1,428,816	+		Psyr_1265	0.62	+1.4
1,428,816	+		Psyr_1265	0.62	-2.1
1,428,828	+		Psyr_1265	0.62	-3.4
1,428,828	+		Psyr_1265	0.62	+0.9
1,428,828	+		Psyr_1265	0.62	-0.5
1,428,828	+		Psyr_1265	0.62	-0.3
1,428,829	-		Psyr_1265	0.62	-0.8
1,428,836	+		Psyr_1265	0.63	+1.0
1,428,836	+		Psyr_1265	0.63	-3.2
1,428,836	+		Psyr_1265	0.63	-1.2
1,428,836	+		Psyr_1265	0.63	-3.4
1,428,836	+		Psyr_1265	0.63	+0.2
1,428,836	+		Psyr_1265	0.63	-1.4
1,428,836	+		Psyr_1265	0.63	-1.5
1,428,836	+		Psyr_1265	0.63	-2.5
1,428,837	-		Psyr_1265	0.63	-2.9
1,428,837	-		Psyr_1265	0.63	+0.4
1,428,837	-		Psyr_1265	0.63	-1.3
1,428,843	+		Psyr_1265	0.63	+1.2
1,428,843	+		Psyr_1265	0.63	+1.7
1,428,844	-		Psyr_1265	0.63	-2.8
1,428,877	+		Psyr_1265	0.65	+3.0
1,428,936	+		Psyr_1265	0.68	+0.7
1,428,937	-		Psyr_1265	0.68	-1.0
1,429,006	+		Psyr_1265	0.71	+1.7
1,429,171	+		Psyr_1265	0.80	-0.8
1,429,171	+		Psyr_1265	0.80	+1.4
1,429,171	+		Psyr_1265	0.80	-3.1
1,429,172	-		Psyr_1265	0.80	+2.0
1,429,182	+		Psyr_1265	0.80	+4.2
1,429,183	-		Psyr_1265	0.80	+0.7
1,429,183	-		Psyr_1265	0.80	+0.7
1,429,183	-		Psyr_1265	0.80	-1.0
1,429,183	-		Psyr_1265	0.80	+0.0
1,429,332	+		Psyr_1265	0.88	-3.9
1,429,332	+		Psyr_1265	0.88	-0.4
1,429,332	+		Psyr_1265	0.88	+0.9
1,429,332	+		Psyr_1265	0.88	+2.8
1,429,332	+		Psyr_1265	0.88	+1.7
1,429,332	+		Psyr_1265	0.88	+2.9
1,429,332	+		Psyr_1265	0.88	-0.4
1,429,332	+		Psyr_1265	0.88	-1.5
1,429,332	+		Psyr_1265	0.88	-2.1
1,429,332	+		Psyr_1265	0.88	-3.1
1,429,332	+		Psyr_1265	0.88	-2.5
1,429,332	+		Psyr_1265	0.88	-1.9
1,429,332	+		Psyr_1265	0.88	-1.0
1,429,332	+		Psyr_1265	0.88	-1.4
1,429,332	+		Psyr_1265	0.88	-1.4
1,429,333	-		Psyr_1265	0.88	+0.0
1,429,333	-		Psyr_1265	0.88	+0.0
1,429,333	-		Psyr_1265	0.88	+1.0
1,429,333	-		Psyr_1265	0.88	-1.1
1,429,333	-		Psyr_1265	0.88	-0.8
1,429,333	-		Psyr_1265	0.88	-2.4
1,429,333	-		Psyr_1265	0.88	+0.1
1,429,333	-		Psyr_1265	0.88	+0.9
1,429,333	-		Psyr_1265	0.88	+0.4
1,429,363	-		Psyr_1265	0.89	+0.2
1,429,463	-				-1.0
1,429,525	+				-1.4
1,429,525	+				-0.7
1,429,525	+				+0.0
1,429,526	-				-2.7
1,429,526	-				-0.5
1,429,536	+				-0.9
1,429,536	+				+0.0
1,429,536	+				-1.4
1,429,536	+				+1.2
1,429,537	-				-1.0
1,429,537	-				+0.8
1,429,537	-				-2.0
1,429,569	+				+0.9
1,429,570	-				+0.5
1,429,659	+				-3.5
1,429,659	+				-1.3
1,429,682	-				+0.2
1,429,775	-				-1.0
1,430,075	+		Psyr_1266	0.24	+1.0
1,430,108	+		Psyr_1266	0.26	-2.0
1,430,108	+		Psyr_1266	0.26	+2.7
1,430,480	+		Psyr_1266	0.53	-1.1
1,430,480	+		Psyr_1266	0.53	-0.1
1,430,480	+		Psyr_1266	0.53	-1.6