Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0938

Experiment: apoplastic, chopping recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, chopping recovery; Green bean
1,073,490	+		Psyr_0937	0.49	+0.6
1,073,490	+		Psyr_0937	0.49	+0.3
1,073,490	+		Psyr_0937	0.49	-1.0
1,073,490	+		Psyr_0937	0.49	+0.3
1,073,491	-		Psyr_0937	0.49	-0.5
1,073,491	-		Psyr_0937	0.49	-0.3
1,073,491	-		Psyr_0937	0.49	+1.0
1,073,491	-		Psyr_0937	0.49	-3.1
1,073,491	-		Psyr_0937	0.49	+2.0
1,073,491	-		Psyr_0937	0.49	-0.6
1,073,585	-		Psyr_0937	0.56	-0.5
1,073,899	-		Psyr_0937	0.78	+2.0
1,073,982	+		Psyr_0937	0.84	-1.1
1,074,075	+				-0.3
1,074,075	+				-2.3
1,074,075	+				-3.2
1,074,075	+				-0.2
1,074,075	+				+0.3
1,074,075	+				+1.9
1,074,075	+				-0.7
1,074,075	+				-2.7
1,074,075	+				+0.8
1,074,075	+				-1.3
1,074,075	+				+1.1
1,074,075	+				-0.5
1,074,076	-				-1.5
1,074,076	-				-1.1
1,074,076	-				-1.1
1,074,076	-				-1.0
1,074,076	-				-2.1
1,074,076	-				+0.0
1,074,076	-				+2.9
1,074,076	-				+0.0
1,074,076	-				-0.7
1,074,076	-				+0.7
1,074,076	-				-0.5
1,074,076	-				-0.7
1,074,213	+				-0.1
1,074,213	+				+0.5
1,074,213	+				+2.2
1,074,213	+				+1.2
1,074,213	+				+1.9
1,074,214	-				-0.3
1,074,214	-				-3.1
1,074,214	-				+0.6
1,074,214	-				-0.6
1,074,291	+				-0.7
1,074,330	+				+2.0
1,074,331	-				-0.3
1,074,334	-				+0.4
1,074,350	+				-2.3
1,074,350	+				+0.5
1,074,351	-				+3.2
1,074,351	-				+1.1
1,074,351	-				-1.8
1,074,351	-				+1.6
1,074,382	+				-0.8
1,074,447	+				-0.9
1,074,447	+				+0.3
1,074,447	+				+1.8
1,074,447	+				-2.5
1,074,447	+				+0.5
1,074,448	-				+0.4
1,074,448	-				-1.3
1,074,455	+				+0.5
1,074,457	+				-1.0
1,074,457	+				-0.4
1,074,457	+				+1.9
1,074,457	+				+0.0
1,074,457	+				-0.2
1,074,457	+				-1.4
1,074,457	+				+3.9
1,074,616	+		Psyr_0938	0.14	-0.5
1,074,617	-		Psyr_0938	0.14	+1.1
1,074,642	+		Psyr_0938	0.16	-0.3
1,074,642	+		Psyr_0938	0.16	+1.6
1,074,643	-		Psyr_0938	0.16	+0.3
1,074,643	-		Psyr_0938	0.16	-1.0
1,074,696	-		Psyr_0938	0.20	+1.4
1,074,696	-		Psyr_0938	0.20	-1.0
1,074,697	+		Psyr_0938	0.20	+2.0
1,074,697	+		Psyr_0938	0.20	+1.5
1,074,697	+		Psyr_0938	0.20	+0.7
1,074,697	+		Psyr_0938	0.20	+0.3
1,074,697	+		Psyr_0938	0.20	+1.8
1,074,697	+		Psyr_0938	0.20	+1.4
1,074,698	-		Psyr_0938	0.20	+1.3
1,074,698	-		Psyr_0938	0.20	+0.5
1,074,698	-		Psyr_0938	0.20	-3.1
1,074,698	-		Psyr_0938	0.20	+0.3
1,074,698	-		Psyr_0938	0.20	-2.1
1,074,698	-		Psyr_0938	0.20	-0.4
1,074,762	-		Psyr_0938	0.26	-1.1
1,074,783	+		Psyr_0938	0.27	+1.1
1,074,783	+		Psyr_0938	0.27	-0.4
1,074,784	-		Psyr_0938	0.28	-1.0
1,074,784	-		Psyr_0938	0.28	-1.2
1,074,786	+		Psyr_0938	0.28	-0.5
1,074,790	-		Psyr_0938	0.28	+0.0
1,074,801	-		Psyr_0938	0.29	+0.2
1,074,844	+		Psyr_0938	0.33	+2.4
1,074,892	+		Psyr_0938	0.36	+0.3
1,074,892	+		Psyr_0938	0.36	-0.8
1,074,892	+		Psyr_0938	0.36	-0.7
1,074,892	+		Psyr_0938	0.36	+0.7
1,074,892	+		Psyr_0938	0.36	+1.3
1,074,893	-		Psyr_0938	0.37	-0.1
1,074,925	-		Psyr_0938	0.39	+0.3
1,074,925	-		Psyr_0938	0.39	+1.0
1,074,991	+		Psyr_0938	0.45	-1.8
1,074,991	+		Psyr_0938	0.45	-2.0
1,074,992	-		Psyr_0938	0.45	-1.2
1,074,992	-		Psyr_0938	0.45	+1.5
1,074,992	-		Psyr_0938	0.45	-1.0
1,075,081	+		Psyr_0938	0.52	-1.5
1,075,082	-		Psyr_0938	0.52	+0.4
1,075,082	-		Psyr_0938	0.52	+0.3
1,075,176	+		Psyr_0938	0.60	+0.3
1,075,176	+		Psyr_0938	0.60	+0.0
1,075,176	+		Psyr_0938	0.60	+1.7
1,075,176	+		Psyr_0938	0.60	+1.6
1,075,177	-		Psyr_0938	0.60	-3.0
1,075,177	-		Psyr_0938	0.60	+0.4
1,075,177	-		Psyr_0938	0.60	-0.0
1,075,191	-		Psyr_0938	0.61	-0.7
1,075,295	+		Psyr_0938	0.70	+0.2
1,075,296	-		Psyr_0938	0.70	+0.2
1,075,296	-		Psyr_0938	0.70	-1.5
1,075,308	+		Psyr_0938	0.71	-1.5
1,075,308	+		Psyr_0938	0.71	-2.0
1,075,384	-		Psyr_0938	0.77	+0.0
1,075,384	-		Psyr_0938	0.77	-2.0
1,075,389	+		Psyr_0938	0.77	-0.2
1,075,389	+		Psyr_0938	0.77	-0.7
1,075,390	-		Psyr_0938	0.78	+0.6
1,075,421	+		Psyr_0938	0.80	+1.0
1,075,422	-		Psyr_0938	0.80	-0.1
1,075,446	+		Psyr_0938	0.82	-2.4
1,075,446	+		Psyr_0938	0.82	+0.5
1,075,447	-		Psyr_0938	0.82	+1.2
1,075,447	-		Psyr_0938	0.82	-2.6
1,075,458	-		Psyr_0938	0.83	+0.4
1,075,499	-		Psyr_0938	0.87	+3.0
1,075,499	-		Psyr_0938	0.87	+0.5
1,075,557	+				+0.3
1,075,560	-				+1.2
1,075,560	-				+0.6
1,075,568	+				-0.1
1,075,634	+				-0.9
1,075,638	-				-0.3
1,075,649	-				-1.9
1,075,649	-				+1.3
1,075,690	+				+0.7
1,075,755	+				-2.4
1,075,755	+				-1.8
1,075,755	+				+0.5
1,075,756	-				+1.0
1,075,874	+		Psyr_0939	0.25	+0.5
1,075,874	+		Psyr_0939	0.25	+1.9
1,075,874	+		Psyr_0939	0.25	-1.4
1,075,874	+		Psyr_0939	0.25	+2.0
1,075,874	+		Psyr_0939	0.25	+0.3
1,075,874	+		Psyr_0939	0.25	-2.0
1,075,875	-		Psyr_0939	0.26	-0.0
1,075,919	+		Psyr_0939	0.38	-0.1
1,075,920	-		Psyr_0939	0.38	-2.0
1,075,920	-		Psyr_0939	0.38	-2.3
1,075,920	-		Psyr_0939	0.38	-0.1
1,075,982	+		Psyr_0939	0.55	-0.7
1,076,019	+		Psyr_0939	0.66	-0.0
1,076,031	+		Psyr_0939	0.69	+0.5
1,076,031	+		Psyr_0939	0.69	-0.9
1,076,032	-		Psyr_0939	0.69	-0.5
1,076,088	+				+1.0
1,076,088	+				-1.7
1,076,089	-				-0.2
1,076,159	+		Psyr_0940	0.32	-1.0
1,076,159	+		Psyr_0940	0.32	+1.2
1,076,199	+		Psyr_0940	0.45	-1.8
1,076,199	+		Psyr_0940	0.45	-2.7
1,076,199	+		Psyr_0940	0.45	+0.2
1,076,199	+		Psyr_0940	0.45	-1.0
1,076,199	+		Psyr_0940	0.45	-2.2
1,076,200	-		Psyr_0940	0.45	+1.2
1,076,200	-		Psyr_0940	0.45	+1.7
1,076,200	-		Psyr_0940	0.45	-2.5
1,076,200	-		Psyr_0940	0.45	+1.4
1,076,223	+		Psyr_0940	0.53	+1.9
1,076,223	+		Psyr_0940	0.53	-1.2
1,076,223	+		Psyr_0940	0.53	-3.5
1,076,223	+		Psyr_0940	0.53	+1.8
1,076,223	+		Psyr_0940	0.53	+0.7
1,076,224	-		Psyr_0940	0.53	-0.2
1,076,224	-		Psyr_0940	0.53	-1.3
1,076,224	-		Psyr_0940	0.53	+1.4
1,076,224	-		Psyr_0940	0.53	+0.8
1,076,224	-		Psyr_0940	0.53	-1.5
1,076,224	-		Psyr_0940	0.53	+2.5
1,076,224	-		Psyr_0940	0.53	+0.0
1,076,267	+		Psyr_0940	0.68	-1.1
1,076,267	+		Psyr_0940	0.68	+1.1
1,076,268	-		Psyr_0940	0.68	-2.7
1,076,268	-		Psyr_0940	0.68	-0.7
1,076,297	+		Psyr_0940	0.78	-1.3
1,076,297	+		Psyr_0940	0.78	+2.5
1,076,297	+		Psyr_0940	0.78	-0.6
1,076,298	-		Psyr_0940	0.78	-0.8
1,076,298	-		Psyr_0940	0.78	+0.5
1,076,298	-		Psyr_0940	0.78	+0.1
1,076,298	-		Psyr_0940	0.78	+0.8
1,076,298	-		Psyr_0940	0.78	+0.3
1,076,298	-		Psyr_0940	0.78	+0.5
1,076,298	-		Psyr_0940	0.78	+1.0
1,076,301	+		Psyr_0940	0.79	+0.9
1,076,301	+		Psyr_0940	0.79	+2.6
1,076,301	+		Psyr_0940	0.79	-2.9
1,076,301	+		Psyr_0940	0.79	-0.6
1,076,302	-		Psyr_0940	0.79	-0.5
1,076,302	-		Psyr_0940	0.79	+1.3
1,076,336	+				-0.2
1,076,337	-				-0.9
1,076,337	-				-2.3
1,076,396	-				-0.6
1,076,537	+				+0.5
1,076,537	+				+0.4
1,076,537	+				-1.3
1,076,537	+				+0.6
1,076,537	+				-0.8
1,076,537	+				-1.5
1,076,537	+				+1.6
1,076,537	+				-0.4
1,076,537	+				+3.8
1,076,537	+				+0.6
1,076,537	+				-0.2
1,076,538	-				-2.3
1,076,538	-				+1.0
1,076,538	-				+0.6
1,076,538	-				+0.9
1,076,538	-				-2.3
1,076,612	+		Psyr_0941	0.11	+0.0
1,076,613	-		Psyr_0941	0.11	-1.5
1,076,613	-		Psyr_0941	0.11	+2.6