Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0821 and Psyr_0822 overlap by 1 nucleotides Psyr_0822 and Psyr_0823 are separated by 12 nucleotides Psyr_0823 and Psyr_0824 are separated by 39 nucleotides
Psyr_0821: Psyr_0821 - PTS system D-fructose-specific IIA component (F1P-forming), Frc family / Phosphocarrier protein HPr / phosphoenolpyruvate--protein phosphotransferase, at 926,782 to 929,652
_0821
Psyr_0822: Psyr_0822 - 1-phosphofructokinase, at 929,652 to 930,593
_0822
Psyr_0823: Psyr_0823 - PTS system D-fructose-specific IIB component (F1P-forming), Frc family / PTS system D-fructose-specific IIC component (F1P-forming), Frc family, at 930,606 to 932,348
_0823
Psyr_0824: Psyr_0824 - acetyl-CoA acetyltransferase, at 932,388 to 933,566
_0824
Position (kb) 930
931
932
933 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 929.650 kb on + strand at 929.782 kb on + strand, within Psyr_0822 at 929.782 kb on + strand, within Psyr_0822 at 929.782 kb on + strand, within Psyr_0822 at 929.782 kb on + strand, within Psyr_0822 at 929.782 kb on + strand, within Psyr_0822 at 929.782 kb on + strand, within Psyr_0822 at 929.783 kb on - strand, within Psyr_0822 at 929.928 kb on - strand, within Psyr_0822 at 930.571 kb on + strand at 930.572 kb on - strand at 930.591 kb on + strand at 930.591 kb on + strand at 930.592 kb on - strand at 930.592 kb on - strand at 930.619 kb on + strand at 930.619 kb on + strand at 930.619 kb on + strand at 930.620 kb on - strand at 930.620 kb on - strand at 930.620 kb on - strand at 930.623 kb on + strand at 930.623 kb on + strand at 930.624 kb on - strand at 930.656 kb on - strand at 931.003 kb on + strand, within Psyr_0823 at 931.197 kb on + strand, within Psyr_0823 at 931.197 kb on + strand, within Psyr_0823 at 931.197 kb on + strand, within Psyr_0823 at 931.198 kb on - strand, within Psyr_0823 at 931.743 kb on + strand, within Psyr_0823 at 931.743 kb on + strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.744 kb on - strand, within Psyr_0823 at 931.927 kb on - strand, within Psyr_0823 at 931.927 kb on - strand, within Psyr_0823 at 931.958 kb on + strand, within Psyr_0823 at 932.163 kb on + strand, within Psyr_0823 at 932.163 kb on + strand, within Psyr_0823 at 932.164 kb on - strand, within Psyr_0823 at 932.245 kb on - strand at 932.289 kb on + strand at 932.289 kb on + strand at 932.290 kb on - strand at 932.290 kb on - strand at 932.389 kb on + strand at 932.778 kb on - strand, within Psyr_0824 at 932.784 kb on - strand, within Psyr_0824 at 933.065 kb on - strand, within Psyr_0824 at 933.104 kb on - strand, within Psyr_0824 at 933.104 kb on - strand, within Psyr_0824 at 933.199 kb on + strand, within Psyr_0824 at 933.199 kb on + strand, within Psyr_0824 at 933.199 kb on + strand, within Psyr_0824 at 933.200 kb on - strand, within Psyr_0824 at 933.200 kb on - strand, within Psyr_0824 at 933.200 kb on - strand, within Psyr_0824
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 929,650 + -2.1 929,782 + Psyr_0822 0.14 -2.7 929,782 + Psyr_0822 0.14 -1.5 929,782 + Psyr_0822 0.14 -1.3 929,782 + Psyr_0822 0.14 -3.6 929,782 + Psyr_0822 0.14 -0.1 929,782 + Psyr_0822 0.14 -2.6 929,783 - Psyr_0822 0.14 +0.4 929,928 - Psyr_0822 0.29 -0.1 930,571 + +0.3 930,572 - -1.9 930,591 + -2.5 930,591 + +0.9 930,592 - -0.3 930,592 - -0.9 930,619 + +0.4 930,619 + +0.5 930,619 + +0.1 930,620 - -0.6 930,620 - -1.9 930,620 - -1.1 930,623 + +2.7 930,623 + -2.3 930,624 - +0.7 930,656 - -0.5 931,003 + Psyr_0823 0.23 +1.7 931,197 + Psyr_0823 0.34 -1.1 931,197 + Psyr_0823 0.34 -0.5 931,197 + Psyr_0823 0.34 -0.5 931,198 - Psyr_0823 0.34 -1.3 931,743 + Psyr_0823 0.65 -0.5 931,743 + Psyr_0823 0.65 +0.2 931,744 - Psyr_0823 0.65 -2.3 931,744 - Psyr_0823 0.65 -0.3 931,744 - Psyr_0823 0.65 -1.4 931,744 - Psyr_0823 0.65 +1.6 931,744 - Psyr_0823 0.65 +0.5 931,744 - Psyr_0823 0.65 -1.5 931,744 - Psyr_0823 0.65 -2.8 931,744 - Psyr_0823 0.65 -1.2 931,744 - Psyr_0823 0.65 +0.3 931,744 - Psyr_0823 0.65 +1.1 931,744 - Psyr_0823 0.65 -0.4 931,744 - Psyr_0823 0.65 +1.3 931,744 - Psyr_0823 0.65 -1.9 931,927 - Psyr_0823 0.76 -2.8 931,927 - Psyr_0823 0.76 +0.1 931,958 + Psyr_0823 0.78 +0.6 932,163 + Psyr_0823 0.89 -0.2 932,163 + Psyr_0823 0.89 -2.8 932,164 - Psyr_0823 0.89 +0.8 932,245 - -1.4 932,289 + +0.1 932,289 + +2.1 932,290 - +1.2 932,290 - +1.8 932,389 + +0.7 932,778 - Psyr_0824 0.33 +2.2 932,784 - Psyr_0824 0.34 +0.5 933,065 - Psyr_0824 0.57 +1.1 933,104 - Psyr_0824 0.61 -2.1 933,104 - Psyr_0824 0.61 -0.4 933,199 + Psyr_0824 0.69 -0.2 933,199 + Psyr_0824 0.69 +3.5 933,199 + Psyr_0824 0.69 -0.2 933,200 - Psyr_0824 0.69 +0.1 933,200 - Psyr_0824 0.69 -2.3 933,200 - Psyr_0824 0.69 +0.7
Or see this region's nucleotide sequence