Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0821 and Psyr_0822 overlap by 1 nucleotides Psyr_0822 and Psyr_0823 are separated by 12 nucleotides
Psyr_0821: Psyr_0821 - PTS system D-fructose-specific IIA component (F1P-forming), Frc family / Phosphocarrier protein HPr / phosphoenolpyruvate--protein phosphotransferase, at 926,782 to 929,652
_0821
Psyr_0822: Psyr_0822 - 1-phosphofructokinase, at 929,652 to 930,593
_0822
Psyr_0823: Psyr_0823 - PTS system D-fructose-specific IIB component (F1P-forming), Frc family / PTS system D-fructose-specific IIC component (F1P-forming), Frc family, at 930,606 to 932,348
_0823
Position (kb) 929
930
931 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 928.682 kb on + strand, within Psyr_0821 at 928.960 kb on - strand, within Psyr_0821 at 929.320 kb on + strand, within Psyr_0821 at 929.320 kb on + strand, within Psyr_0821 at 929.321 kb on - strand, within Psyr_0821 at 929.321 kb on - strand, within Psyr_0821 at 929.321 kb on - strand, within Psyr_0821 at 929.650 kb on + strand at 929.782 kb on + strand, within Psyr_0822 at 929.782 kb on + strand, within Psyr_0822 at 929.782 kb on + strand, within Psyr_0822 at 929.782 kb on + strand, within Psyr_0822 at 929.782 kb on + strand, within Psyr_0822 at 929.782 kb on + strand, within Psyr_0822 at 929.783 kb on - strand, within Psyr_0822 at 929.928 kb on - strand, within Psyr_0822 at 930.571 kb on + strand at 930.572 kb on - strand at 930.591 kb on + strand at 930.591 kb on + strand at 930.592 kb on - strand at 930.592 kb on - strand at 930.619 kb on + strand at 930.619 kb on + strand at 930.619 kb on + strand at 930.620 kb on - strand at 930.620 kb on - strand at 930.620 kb on - strand at 930.623 kb on + strand at 930.623 kb on + strand at 930.624 kb on - strand at 930.656 kb on - strand at 931.003 kb on + strand, within Psyr_0823 at 931.197 kb on + strand, within Psyr_0823 at 931.197 kb on + strand, within Psyr_0823 at 931.197 kb on + strand, within Psyr_0823 at 931.198 kb on - strand, within Psyr_0823
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 928,682 + Psyr_0821 0.66 +0.5 928,960 - Psyr_0821 0.76 +0.8 929,320 + Psyr_0821 0.88 +0.1 929,320 + Psyr_0821 0.88 -0.5 929,321 - Psyr_0821 0.88 -1.5 929,321 - Psyr_0821 0.88 +1.2 929,321 - Psyr_0821 0.88 -0.7 929,650 + -2.1 929,782 + Psyr_0822 0.14 -2.7 929,782 + Psyr_0822 0.14 -1.5 929,782 + Psyr_0822 0.14 -1.3 929,782 + Psyr_0822 0.14 -3.6 929,782 + Psyr_0822 0.14 -0.1 929,782 + Psyr_0822 0.14 -2.6 929,783 - Psyr_0822 0.14 +0.4 929,928 - Psyr_0822 0.29 -0.1 930,571 + +0.3 930,572 - -1.9 930,591 + -2.5 930,591 + +0.9 930,592 - -0.3 930,592 - -0.9 930,619 + +0.4 930,619 + +0.5 930,619 + +0.1 930,620 - -0.6 930,620 - -1.9 930,620 - -1.1 930,623 + +2.7 930,623 + -2.3 930,624 - +0.7 930,656 - -0.5 931,003 + Psyr_0823 0.23 +1.7 931,197 + Psyr_0823 0.34 -1.1 931,197 + Psyr_0823 0.34 -0.5 931,197 + Psyr_0823 0.34 -0.5 931,198 - Psyr_0823 0.34 -1.3
Or see this region's nucleotide sequence