Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_875

Experiment: Chloride 400 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_874 and PfGW456L13_875 are separated by 166 nucleotidesPfGW456L13_875 and PfGW456L13_876 are separated by 234 nucleotidesPfGW456L13_876 and PfGW456L13_877 overlap by 14 nucleotides PfGW456L13_874 - Polyphosphate kinase (EC 2.7.4.1), at 980,683 to 982,911 _874 PfGW456L13_875 - Exopolyphosphatase (EC 3.6.1.11), at 983,078 to 984,580 _875 PfGW456L13_876 - Glutamate transport ATP-binding protein, at 984,815 to 985,552 _876 PfGW456L13_877 - Putative amino acid ABC transporter, permease protein, at 985,539 to 986,189 _877 Position (kb) 983 984 985Strain fitness (log2 ratio) -3 -2 -1 0 1at 982.117 kb on + strand, within PfGW456L13_874at 982.117 kb on + strand, within PfGW456L13_874at 982.117 kb on + strand, within PfGW456L13_874at 982.117 kb on + strand, within PfGW456L13_874at 982.117 kb on + strand, within PfGW456L13_874at 982.117 kb on + strand, within PfGW456L13_874at 982.117 kb on + strand, within PfGW456L13_874at 982.117 kb on + strand, within PfGW456L13_874at 982.117 kb on + strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.118 kb on - strand, within PfGW456L13_874at 982.212 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.216 kb on + strand, within PfGW456L13_874at 982.217 kb on - strand, within PfGW456L13_874at 982.217 kb on - strand, within PfGW456L13_874at 982.217 kb on - strand, within PfGW456L13_874at 982.217 kb on - strand, within PfGW456L13_874at 982.217 kb on - strand, within PfGW456L13_874at 982.217 kb on - strand, within PfGW456L13_874at 982.240 kb on + strand, within PfGW456L13_874at 982.240 kb on + strand, within PfGW456L13_874at 982.240 kb on + strand, within PfGW456L13_874at 982.241 kb on - strand, within PfGW456L13_874at 982.241 kb on - strand, within PfGW456L13_874at 982.241 kb on - strand, within PfGW456L13_874at 982.241 kb on - strand, within PfGW456L13_874at 982.250 kb on - strand, within PfGW456L13_874at 982.250 kb on - strand, within PfGW456L13_874at 982.250 kb on - strand, within PfGW456L13_874at 982.250 kb on - strand, within PfGW456L13_874at 982.250 kb on - strand, within PfGW456L13_874at 982.324 kb on - strand, within PfGW456L13_874at 982.324 kb on - strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.486 kb on + strand, within PfGW456L13_874at 982.487 kb on - strand, within PfGW456L13_874at 982.487 kb on - strand, within PfGW456L13_874at 982.487 kb on - strand, within PfGW456L13_874at 982.487 kb on - strand, within PfGW456L13_874at 982.487 kb on - strand, within PfGW456L13_874at 982.487 kb on - strand, within PfGW456L13_874at 982.487 kb on - strand, within PfGW456L13_874at 982.627 kb on + strand, within PfGW456L13_874at 982.627 kb on + strand, within PfGW456L13_874at 982.627 kb on + strand, within PfGW456L13_874at 982.768 kb on + strandat 982.768 kb on + strandat 982.768 kb on + strandat 982.768 kb on + strandat 982.769 kb on - strandat 982.769 kb on - strandat 982.769 kb on - strandat 982.769 kb on - strandat 982.769 kb on - strandat 982.816 kb on + strandat 982.816 kb on + strandat 982.817 kb on - strandat 982.817 kb on - strandat 982.817 kb on - strandat 982.824 kb on + strandat 982.824 kb on + strandat 983.017 kb on + strandat 983.018 kb on - strandat 983.277 kb on - strand, within PfGW456L13_875at 983.448 kb on + strand, within PfGW456L13_875at 983.580 kb on - strand, within PfGW456L13_875at 983.673 kb on + strand, within PfGW456L13_875at 983.673 kb on + strand, within PfGW456L13_875at 983.794 kb on + strand, within PfGW456L13_875at 984.009 kb on + strand, within PfGW456L13_875at 984.066 kb on + strand, within PfGW456L13_875at 984.066 kb on + strand, within PfGW456L13_875at 984.066 kb on + strand, within PfGW456L13_875at 984.067 kb on - strand, within PfGW456L13_875at 984.207 kb on + strand, within PfGW456L13_875at 984.208 kb on - strand, within PfGW456L13_875at 984.208 kb on - strand, within PfGW456L13_875at 984.350 kb on - strand, within PfGW456L13_875at 984.350 kb on - strand, within PfGW456L13_875at 984.738 kb on + strandat 984.739 kb on - strandat 984.739 kb on - strandat 984.881 kb on + strandat 984.881 kb on + strandat 984.881 kb on + strandat 984.881 kb on + strandat 984.881 kb on + strandat 984.881 kb on + strandat 984.934 kb on + strand, within PfGW456L13_876at 984.934 kb on + strand, within PfGW456L13_876at 984.935 kb on - strand, within PfGW456L13_876at 984.935 kb on - strand, within PfGW456L13_876at 984.935 kb on - strand, within PfGW456L13_876at 984.935 kb on - strand, within PfGW456L13_876at 984.935 kb on - strand, within PfGW456L13_876at 985.070 kb on + strand, within PfGW456L13_876at 985.070 kb on + strand, within PfGW456L13_876at 985.070 kb on + strand, within PfGW456L13_876at 985.070 kb on + strand, within PfGW456L13_876at 985.070 kb on + strand, within PfGW456L13_876at 985.070 kb on + strand, within PfGW456L13_876at 985.071 kb on - strand, within PfGW456L13_876at 985.071 kb on - strand, within PfGW456L13_876at 985.071 kb on - strand, within PfGW456L13_876at 985.356 kb on + strand, within PfGW456L13_876at 985.515 kb on + strandat 985.515 kb on + strandat 985.516 kb on - strandat 985.516 kb on - strandat 985.516 kb on - strandat 985.518 kb on + strandat 985.518 kb on + strandat 985.518 kb on + strandat 985.518 kb on + strandat 985.518 kb on + strandat 985.518 kb on + strandat 985.518 kb on + strandat 985.518 kb on + strandat 985.518 kb on + strandat 985.518 kb on + strandat 985.518 kb on + strandat 985.518 kb on + strandat 985.518 kb on + strandat 985.518 kb on + strandat 985.518 kb on + strandat 985.518 kb on + strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.519 kb on - strandat 985.522 kb on + strandat 985.522 kb on + strandat 985.522 kb on + strandat 985.522 kb on + strandat 985.522 kb on + strandat 985.523 kb on - strandat 985.523 kb on - strandat 985.523 kb on - strandat 985.523 kb on - strandat 985.523 kb on - strandat 985.523 kb on - strandat 985.540 kb on + strandat 985.540 kb on + strandat 985.541 kb on - strandat 985.570 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 400 mM
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982,117 + PfGW456L13_874 0.64 -0.1
982,117 + PfGW456L13_874 0.64 -0.4
982,117 + PfGW456L13_874 0.64 -0.2
982,117 + PfGW456L13_874 0.64 -0.9
982,117 + PfGW456L13_874 0.64 -0.3
982,117 + PfGW456L13_874 0.64 -1.1
982,117 + PfGW456L13_874 0.64 -0.4
982,117 + PfGW456L13_874 0.64 -0.7
982,117 + PfGW456L13_874 0.64 +0.5
982,118 - PfGW456L13_874 0.64 +0.7
982,118 - PfGW456L13_874 0.64 +0.0
982,118 - PfGW456L13_874 0.64 -0.8
982,118 - PfGW456L13_874 0.64 +0.0
982,118 - PfGW456L13_874 0.64 -0.1
982,118 - PfGW456L13_874 0.64 -0.7
982,118 - PfGW456L13_874 0.64 +0.5
982,118 - PfGW456L13_874 0.64 -0.7
982,118 - PfGW456L13_874 0.64 -1.4
982,118 - PfGW456L13_874 0.64 +1.2
982,118 - PfGW456L13_874 0.64 +0.4
982,118 - PfGW456L13_874 0.64 +0.8
982,118 - PfGW456L13_874 0.64 -1.5
982,118 - PfGW456L13_874 0.64 -1.1
982,118 - PfGW456L13_874 0.64 -0.9
982,118 - PfGW456L13_874 0.64 -1.0
982,118 - PfGW456L13_874 0.64 -0.7
982,118 - PfGW456L13_874 0.64 -0.3
982,118 - PfGW456L13_874 0.64 -1.1
982,118 - PfGW456L13_874 0.64 -0.0
982,118 - PfGW456L13_874 0.64 +0.4
982,118 - PfGW456L13_874 0.64 -0.1
982,212 + PfGW456L13_874 0.69 +0.4
982,216 + PfGW456L13_874 0.69 -2.3
982,216 + PfGW456L13_874 0.69 -0.2
982,216 + PfGW456L13_874 0.69 +0.1
982,216 + PfGW456L13_874 0.69 +0.6
982,216 + PfGW456L13_874 0.69 -1.0
982,216 + PfGW456L13_874 0.69 -2.3
982,216 + PfGW456L13_874 0.69 -1.1
982,216 + PfGW456L13_874 0.69 -0.3
982,216 + PfGW456L13_874 0.69 -1.0
982,216 + PfGW456L13_874 0.69 -1.0
982,217 - PfGW456L13_874 0.69 -0.7
982,217 - PfGW456L13_874 0.69 +1.6
982,217 - PfGW456L13_874 0.69 -0.8
982,217 - PfGW456L13_874 0.69 +0.1
982,217 - PfGW456L13_874 0.69 -0.3
982,217 - PfGW456L13_874 0.69 -0.4
982,240 + PfGW456L13_874 0.70 -1.0
982,240 + PfGW456L13_874 0.70 -0.2
982,240 + PfGW456L13_874 0.70 -1.8
982,241 - PfGW456L13_874 0.70 +1.0
982,241 - PfGW456L13_874 0.70 -0.2
982,241 - PfGW456L13_874 0.70 +0.4
982,241 - PfGW456L13_874 0.70 -0.2
982,250 - PfGW456L13_874 0.70 -2.1
982,250 - PfGW456L13_874 0.70 -0.4
982,250 - PfGW456L13_874 0.70 +0.7
982,250 - PfGW456L13_874 0.70 +0.3
982,250 - PfGW456L13_874 0.70 +0.2
982,324 - PfGW456L13_874 0.74 +0.1
982,324 - PfGW456L13_874 0.74 -1.6
982,486 + PfGW456L13_874 0.81 -1.2
982,486 + PfGW456L13_874 0.81 -0.0
982,486 + PfGW456L13_874 0.81 -1.2
982,486 + PfGW456L13_874 0.81 -1.3
982,486 + PfGW456L13_874 0.81 +0.7
982,486 + PfGW456L13_874 0.81 +0.3
982,486 + PfGW456L13_874 0.81 -1.2
982,486 + PfGW456L13_874 0.81 -0.6
982,486 + PfGW456L13_874 0.81 -0.8
982,486 + PfGW456L13_874 0.81 -1.4
982,486 + PfGW456L13_874 0.81 +0.3
982,487 - PfGW456L13_874 0.81 -0.9
982,487 - PfGW456L13_874 0.81 -2.8
982,487 - PfGW456L13_874 0.81 -0.2
982,487 - PfGW456L13_874 0.81 -0.3
982,487 - PfGW456L13_874 0.81 -0.4
982,487 - PfGW456L13_874 0.81 -0.9
982,487 - PfGW456L13_874 0.81 -0.4
982,627 + PfGW456L13_874 0.87 -1.5
982,627 + PfGW456L13_874 0.87 -1.6
982,627 + PfGW456L13_874 0.87 -1.0
982,768 + +0.1
982,768 + -1.0
982,768 + -1.1
982,768 + -0.1
982,769 - +0.1
982,769 - -0.2
982,769 - +0.1
982,769 - -0.3
982,769 - +0.5
982,816 + -0.9
982,816 + -1.2
982,817 - +0.6
982,817 - -0.2
982,817 - -0.7
982,824 + +0.7
982,824 + -0.4
983,017 + +0.2
983,018 - -0.1
983,277 - PfGW456L13_875 0.13 +1.0
983,448 + PfGW456L13_875 0.25 +0.9
983,580 - PfGW456L13_875 0.33 -0.1
983,673 + PfGW456L13_875 0.40 -1.1
983,673 + PfGW456L13_875 0.40 -1.2
983,794 + PfGW456L13_875 0.48 -2.3
984,009 + PfGW456L13_875 0.62 -0.6
984,066 + PfGW456L13_875 0.66 +0.4
984,066 + PfGW456L13_875 0.66 -0.2
984,066 + PfGW456L13_875 0.66 -2.2
984,067 - PfGW456L13_875 0.66 -1.9
984,207 + PfGW456L13_875 0.75 -1.4
984,208 - PfGW456L13_875 0.75 +0.4
984,208 - PfGW456L13_875 0.75 -0.6
984,350 - PfGW456L13_875 0.85 -1.5
984,350 - PfGW456L13_875 0.85 -1.3
984,738 + -0.6
984,739 - +0.7
984,739 - -0.1
984,881 + -0.0
984,881 + +0.2
984,881 + -0.2
984,881 + +1.0
984,881 + +0.5
984,881 + +0.2
984,934 + PfGW456L13_876 0.16 +0.0
984,934 + PfGW456L13_876 0.16 +0.4
984,935 - PfGW456L13_876 0.16 -0.1
984,935 - PfGW456L13_876 0.16 +0.9
984,935 - PfGW456L13_876 0.16 -0.3
984,935 - PfGW456L13_876 0.16 -0.6
984,935 - PfGW456L13_876 0.16 +0.4
985,070 + PfGW456L13_876 0.35 +0.6
985,070 + PfGW456L13_876 0.35 +0.8
985,070 + PfGW456L13_876 0.35 +0.4
985,070 + PfGW456L13_876 0.35 +1.0
985,070 + PfGW456L13_876 0.35 -0.9
985,070 + PfGW456L13_876 0.35 -0.2
985,071 - PfGW456L13_876 0.35 -0.3
985,071 - PfGW456L13_876 0.35 +0.0
985,071 - PfGW456L13_876 0.35 +1.1
985,356 + PfGW456L13_876 0.73 +0.3
985,515 + -0.2
985,515 + -0.7
985,516 - -1.2
985,516 - +0.7
985,516 - +0.8
985,518 + -0.4
985,518 + +1.6
985,518 + -0.0
985,518 + -0.1
985,518 + +0.1
985,518 + -0.8
985,518 + -0.2
985,518 + +0.6
985,518 + -0.3
985,518 + +0.2
985,518 + +1.0
985,518 + -0.6
985,518 + +0.2
985,518 + -0.3
985,518 + +0.1
985,518 + +0.9
985,519 - -0.5
985,519 - +0.6
985,519 - -0.9
985,519 - +0.5
985,519 - +1.2
985,519 - +0.3
985,519 - -0.6
985,519 - +0.5
985,519 - +0.2
985,519 - +0.4
985,519 - -1.3
985,519 - -0.7
985,519 - -0.4
985,519 - +0.8
985,519 - -0.1
985,519 - +0.4
985,519 - +0.2
985,519 - -0.1
985,519 - -0.0
985,519 - -0.1
985,519 - +0.4
985,519 - +0.0
985,522 + +0.2
985,522 + +0.2
985,522 + -0.4
985,522 + -0.3
985,522 + +0.4
985,523 - +0.3
985,523 - -0.4
985,523 - +0.1
985,523 - +0.2
985,523 - -0.4
985,523 - +0.2
985,540 + +1.0
985,540 + +1.3
985,541 - -0.1
985,570 + -0.3

Or see this region's nucleotide sequence