Experiment: Chloride 400 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_561 and PfGW456L13_562 are separated by 108 nucleotides PfGW456L13_562 and PfGW456L13_563 are separated by 28 nucleotides PfGW456L13_563 and PfGW456L13_564 overlap by 4 nucleotides
PfGW456L13_561 - Outer membrane receptor proteins, mostly Fe transport, at 659,456 to 659,776
_561
PfGW456L13_562 - Holliday junction resolvasome, helicase subunit, at 659,885 to 660,202
_562
PfGW456L13_563 - FIG00953248: hypothetical protein, at 660,231 to 660,551
_563
PfGW456L13_564 - FIG00953482: hypothetical protein, at 660,548 to 662,509
_564
Position (kb) 659
660
661 Strain fitness (log2 ratio) -2
-1
0
1
2 at 658.963 kb on + strand at 658.963 kb on + strand at 658.964 kb on - strand at 658.968 kb on + strand at 658.988 kb on + strand at 659.019 kb on + strand at 659.020 kb on - strand at 659.020 kb on - strand at 659.020 kb on - strand at 659.083 kb on + strand at 659.083 kb on + strand at 659.083 kb on + strand at 659.083 kb on + strand at 659.084 kb on - strand at 659.084 kb on - strand at 659.084 kb on - strand at 659.084 kb on - strand at 659.114 kb on + strand at 659.222 kb on + strand at 659.359 kb on + strand at 659.359 kb on + strand at 659.359 kb on + strand at 659.359 kb on + strand at 659.360 kb on - strand at 659.362 kb on + strand at 659.362 kb on + strand at 659.363 kb on - strand at 659.363 kb on - strand at 659.363 kb on - strand at 659.452 kb on - strand at 659.452 kb on - strand at 659.547 kb on + strand, within PfGW456L13_561 at 659.547 kb on + strand, within PfGW456L13_561 at 659.547 kb on + strand, within PfGW456L13_561 at 659.547 kb on + strand, within PfGW456L13_561 at 659.547 kb on + strand, within PfGW456L13_561 at 659.547 kb on + strand, within PfGW456L13_561 at 659.547 kb on + strand, within PfGW456L13_561 at 659.548 kb on - strand, within PfGW456L13_561 at 659.548 kb on - strand, within PfGW456L13_561 at 659.551 kb on + strand, within PfGW456L13_561 at 659.592 kb on + strand, within PfGW456L13_561 at 659.593 kb on - strand, within PfGW456L13_561 at 659.774 kb on + strand at 659.774 kb on + strand at 659.774 kb on + strand at 659.835 kb on - strand at 659.926 kb on + strand, within PfGW456L13_562 at 659.926 kb on + strand, within PfGW456L13_562 at 659.926 kb on + strand, within PfGW456L13_562 at 659.936 kb on + strand, within PfGW456L13_562 at 659.936 kb on + strand, within PfGW456L13_562 at 659.958 kb on - strand, within PfGW456L13_562 at 659.958 kb on - strand, within PfGW456L13_562 at 659.958 kb on - strand, within PfGW456L13_562 at 660.132 kb on - strand, within PfGW456L13_562 at 660.200 kb on + strand at 660.200 kb on + strand at 660.200 kb on + strand at 660.200 kb on + strand at 660.200 kb on + strand at 660.200 kb on + strand at 660.200 kb on + strand at 660.201 kb on - strand at 660.201 kb on - strand at 660.204 kb on + strand at 660.204 kb on + strand at 660.204 kb on + strand at 660.204 kb on + strand at 660.204 kb on + strand at 660.205 kb on - strand at 660.205 kb on - strand at 660.205 kb on - strand at 660.205 kb on - strand at 660.259 kb on + strand at 660.259 kb on + strand at 660.259 kb on + strand at 660.259 kb on + strand at 660.259 kb on + strand at 660.259 kb on + strand at 660.259 kb on + strand at 660.259 kb on + strand at 660.259 kb on + strand at 660.260 kb on - strand at 660.260 kb on - strand at 660.260 kb on - strand at 660.260 kb on - strand at 660.260 kb on - strand at 660.260 kb on - strand at 660.260 kb on - strand at 660.260 kb on - strand at 660.260 kb on - strand at 660.260 kb on - strand at 660.260 kb on - strand at 660.296 kb on + strand, within PfGW456L13_563 at 660.296 kb on + strand, within PfGW456L13_563 at 660.296 kb on + strand, within PfGW456L13_563 at 660.296 kb on + strand, within PfGW456L13_563 at 660.296 kb on + strand, within PfGW456L13_563 at 660.296 kb on + strand, within PfGW456L13_563 at 660.296 kb on + strand, within PfGW456L13_563 at 660.296 kb on + strand, within PfGW456L13_563 at 660.296 kb on + strand, within PfGW456L13_563 at 660.297 kb on - strand, within PfGW456L13_563 at 660.297 kb on - strand, within PfGW456L13_563 at 660.297 kb on - strand, within PfGW456L13_563 at 660.297 kb on - strand, within PfGW456L13_563 at 660.297 kb on - strand, within PfGW456L13_563 at 660.297 kb on - strand, within PfGW456L13_563 at 660.297 kb on - strand, within PfGW456L13_563 at 660.297 kb on - strand, within PfGW456L13_563 at 660.297 kb on - strand, within PfGW456L13_563 at 660.297 kb on - strand, within PfGW456L13_563 at 660.297 kb on - strand, within PfGW456L13_563 at 660.297 kb on - strand, within PfGW456L13_563 at 660.297 kb on - strand, within PfGW456L13_563 at 660.297 kb on - strand, within PfGW456L13_563 at 660.314 kb on + strand, within PfGW456L13_563 at 660.314 kb on + strand, within PfGW456L13_563 at 660.315 kb on - strand, within PfGW456L13_563 at 660.315 kb on - strand, within PfGW456L13_563 at 660.315 kb on - strand, within PfGW456L13_563 at 660.317 kb on + strand, within PfGW456L13_563 at 660.317 kb on + strand, within PfGW456L13_563 at 660.318 kb on - strand, within PfGW456L13_563 at 660.318 kb on - strand, within PfGW456L13_563 at 660.318 kb on - strand, within PfGW456L13_563 at 660.368 kb on + strand, within PfGW456L13_563 at 660.368 kb on + strand, within PfGW456L13_563 at 660.368 kb on + strand, within PfGW456L13_563 at 660.368 kb on + strand, within PfGW456L13_563 at 660.368 kb on + strand, within PfGW456L13_563 at 660.368 kb on + strand, within PfGW456L13_563 at 660.368 kb on + strand, within PfGW456L13_563 at 660.369 kb on - strand, within PfGW456L13_563 at 660.369 kb on - strand, within PfGW456L13_563 at 660.369 kb on - strand, within PfGW456L13_563 at 660.369 kb on - strand, within PfGW456L13_563 at 660.369 kb on - strand, within PfGW456L13_563 at 660.369 kb on - strand, within PfGW456L13_563 at 660.369 kb on - strand, within PfGW456L13_563 at 660.369 kb on - strand, within PfGW456L13_563 at 660.369 kb on - strand, within PfGW456L13_563 at 660.369 kb on - strand, within PfGW456L13_563 at 660.624 kb on + strand at 660.624 kb on + strand at 660.624 kb on + strand at 660.624 kb on + strand at 660.624 kb on + strand at 660.624 kb on + strand at 660.625 kb on - strand at 660.625 kb on - strand at 660.625 kb on - strand at 660.625 kb on - strand at 660.932 kb on + strand, within PfGW456L13_564 at 660.933 kb on - strand, within PfGW456L13_564 at 660.933 kb on - strand, within PfGW456L13_564 at 660.933 kb on - strand, within PfGW456L13_564 at 660.933 kb on - strand, within PfGW456L13_564 at 661.106 kb on + strand, within PfGW456L13_564 at 661.106 kb on + strand, within PfGW456L13_564 at 661.106 kb on + strand, within PfGW456L13_564 at 661.106 kb on + strand, within PfGW456L13_564 at 661.106 kb on + strand, within PfGW456L13_564 at 661.106 kb on + strand, within PfGW456L13_564 at 661.106 kb on + strand, within PfGW456L13_564 at 661.106 kb on + strand, within PfGW456L13_564 at 661.106 kb on + strand, within PfGW456L13_564 at 661.106 kb on + strand, within PfGW456L13_564 at 661.106 kb on + strand, within PfGW456L13_564 at 661.106 kb on + strand, within PfGW456L13_564 at 661.107 kb on - strand, within PfGW456L13_564 at 661.107 kb on - strand, within PfGW456L13_564 at 661.107 kb on - strand, within PfGW456L13_564 at 661.107 kb on - strand, within PfGW456L13_564 at 661.107 kb on - strand, within PfGW456L13_564 at 661.107 kb on - strand, within PfGW456L13_564 at 661.107 kb on - strand, within PfGW456L13_564 at 661.107 kb on - strand, within PfGW456L13_564 at 661.107 kb on - strand, within PfGW456L13_564 at 661.107 kb on - strand, within PfGW456L13_564 at 661.107 kb on - strand, within PfGW456L13_564 at 661.107 kb on - strand, within PfGW456L13_564 at 661.110 kb on + strand, within PfGW456L13_564 at 661.110 kb on + strand, within PfGW456L13_564 at 661.111 kb on - strand, within PfGW456L13_564 at 661.111 kb on - strand, within PfGW456L13_564 at 661.169 kb on + strand, within PfGW456L13_564 at 661.169 kb on + strand, within PfGW456L13_564 at 661.169 kb on + strand, within PfGW456L13_564 at 661.169 kb on + strand, within PfGW456L13_564 at 661.169 kb on + strand, within PfGW456L13_564 at 661.169 kb on + strand, within PfGW456L13_564 at 661.170 kb on - strand, within PfGW456L13_564 at 661.170 kb on - strand, within PfGW456L13_564 at 661.170 kb on - strand, within PfGW456L13_564 at 661.170 kb on - strand, within PfGW456L13_564 at 661.170 kb on - strand, within PfGW456L13_564 at 661.170 kb on - strand, within PfGW456L13_564 at 661.170 kb on - strand, within PfGW456L13_564
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 400 mM remove 658,963 + -0.3 658,963 + +0.8 658,964 - -0.2 658,968 + -0.1 658,988 + +0.0 659,019 + +0.5 659,020 - +0.0 659,020 - +0.4 659,020 - +0.8 659,083 + -0.0 659,083 + +0.3 659,083 + -0.1 659,083 + +0.7 659,084 - +1.9 659,084 - +0.5 659,084 - -0.2 659,084 - -0.0 659,114 + +0.3 659,222 + +1.7 659,359 + +0.3 659,359 + -0.2 659,359 + +0.4 659,359 + +0.2 659,360 - +1.7 659,362 + +1.1 659,362 + +0.1 659,363 - +0.2 659,363 - -1.2 659,363 - -0.1 659,452 - -1.7 659,452 - +0.7 659,547 + PfGW456L13_561 0.28 -0.0 659,547 + PfGW456L13_561 0.28 -0.7 659,547 + PfGW456L13_561 0.28 +0.2 659,547 + PfGW456L13_561 0.28 +0.2 659,547 + PfGW456L13_561 0.28 -0.9 659,547 + PfGW456L13_561 0.28 +0.6 659,547 + PfGW456L13_561 0.28 +0.1 659,548 - PfGW456L13_561 0.29 +0.8 659,548 - PfGW456L13_561 0.29 +0.1 659,551 + PfGW456L13_561 0.30 -0.7 659,592 + PfGW456L13_561 0.42 +0.8 659,593 - PfGW456L13_561 0.43 -0.3 659,774 + -0.2 659,774 + -1.2 659,774 + +0.0 659,835 - +0.2 659,926 + PfGW456L13_562 0.13 -0.5 659,926 + PfGW456L13_562 0.13 -0.0 659,926 + PfGW456L13_562 0.13 -1.2 659,936 + PfGW456L13_562 0.16 -0.2 659,936 + PfGW456L13_562 0.16 -0.3 659,958 - PfGW456L13_562 0.23 -0.6 659,958 - PfGW456L13_562 0.23 -0.7 659,958 - PfGW456L13_562 0.23 -0.7 660,132 - PfGW456L13_562 0.78 +0.0 660,200 + -0.8 660,200 + +0.6 660,200 + +0.1 660,200 + +0.0 660,200 + +0.0 660,200 + -0.0 660,200 + -0.2 660,201 - -0.9 660,201 - -0.0 660,204 + -0.6 660,204 + +0.8 660,204 + -0.4 660,204 + +0.2 660,204 + +2.2 660,205 - -2.1 660,205 - +0.6 660,205 - -0.5 660,205 - -1.4 660,259 + -0.9 660,259 + +0.3 660,259 + +0.5 660,259 + -0.6 660,259 + -0.2 660,259 + +0.6 660,259 + -1.6 660,259 + +0.5 660,259 + -0.5 660,260 - -0.3 660,260 - +0.9 660,260 - -0.1 660,260 - -0.5 660,260 - +0.5 660,260 - -0.4 660,260 - -0.1 660,260 - -0.6 660,260 - +0.2 660,260 - -0.4 660,260 - +0.3 660,296 + PfGW456L13_563 0.20 +0.3 660,296 + PfGW456L13_563 0.20 +0.6 660,296 + PfGW456L13_563 0.20 -0.7 660,296 + PfGW456L13_563 0.20 -0.7 660,296 + PfGW456L13_563 0.20 -0.5 660,296 + PfGW456L13_563 0.20 -0.6 660,296 + PfGW456L13_563 0.20 -0.5 660,296 + PfGW456L13_563 0.20 +0.2 660,296 + PfGW456L13_563 0.20 -1.2 660,297 - PfGW456L13_563 0.21 -0.7 660,297 - PfGW456L13_563 0.21 -0.4 660,297 - PfGW456L13_563 0.21 -2.3 660,297 - PfGW456L13_563 0.21 -0.6 660,297 - PfGW456L13_563 0.21 -0.8 660,297 - PfGW456L13_563 0.21 -1.2 660,297 - PfGW456L13_563 0.21 -0.4 660,297 - PfGW456L13_563 0.21 -0.8 660,297 - PfGW456L13_563 0.21 -0.1 660,297 - PfGW456L13_563 0.21 +0.1 660,297 - PfGW456L13_563 0.21 -0.2 660,297 - PfGW456L13_563 0.21 +0.0 660,297 - PfGW456L13_563 0.21 -1.1 660,297 - PfGW456L13_563 0.21 +0.9 660,314 + PfGW456L13_563 0.26 -0.3 660,314 + PfGW456L13_563 0.26 +0.8 660,315 - PfGW456L13_563 0.26 -0.4 660,315 - PfGW456L13_563 0.26 +0.1 660,315 - PfGW456L13_563 0.26 -0.1 660,317 + PfGW456L13_563 0.27 +0.3 660,317 + PfGW456L13_563 0.27 +0.8 660,318 - PfGW456L13_563 0.27 +0.2 660,318 - PfGW456L13_563 0.27 -2.0 660,318 - PfGW456L13_563 0.27 -0.4 660,368 + PfGW456L13_563 0.43 +0.1 660,368 + PfGW456L13_563 0.43 +0.0 660,368 + PfGW456L13_563 0.43 -1.4 660,368 + PfGW456L13_563 0.43 -0.6 660,368 + PfGW456L13_563 0.43 +0.2 660,368 + PfGW456L13_563 0.43 -0.3 660,368 + PfGW456L13_563 0.43 -2.1 660,369 - PfGW456L13_563 0.43 -0.2 660,369 - PfGW456L13_563 0.43 -0.8 660,369 - PfGW456L13_563 0.43 +0.8 660,369 - PfGW456L13_563 0.43 +0.3 660,369 - PfGW456L13_563 0.43 -0.5 660,369 - PfGW456L13_563 0.43 +0.6 660,369 - PfGW456L13_563 0.43 -0.8 660,369 - PfGW456L13_563 0.43 -1.0 660,369 - PfGW456L13_563 0.43 -1.1 660,369 - PfGW456L13_563 0.43 -0.3 660,624 + -1.5 660,624 + -0.7 660,624 + -0.2 660,624 + -0.4 660,624 + -0.1 660,624 + -0.6 660,625 - +0.0 660,625 - -0.4 660,625 - +0.1 660,625 - -0.6 660,932 + PfGW456L13_564 0.20 -0.4 660,933 - PfGW456L13_564 0.20 -0.8 660,933 - PfGW456L13_564 0.20 +0.9 660,933 - PfGW456L13_564 0.20 -0.1 660,933 - PfGW456L13_564 0.20 -0.9 661,106 + PfGW456L13_564 0.28 +0.2 661,106 + PfGW456L13_564 0.28 +0.5 661,106 + PfGW456L13_564 0.28 +0.2 661,106 + PfGW456L13_564 0.28 -0.7 661,106 + PfGW456L13_564 0.28 -0.5 661,106 + PfGW456L13_564 0.28 -0.8 661,106 + PfGW456L13_564 0.28 -0.1 661,106 + PfGW456L13_564 0.28 +1.1 661,106 + PfGW456L13_564 0.28 +0.3 661,106 + PfGW456L13_564 0.28 -0.3 661,106 + PfGW456L13_564 0.28 +0.7 661,106 + PfGW456L13_564 0.28 +0.2 661,107 - PfGW456L13_564 0.28 -1.4 661,107 - PfGW456L13_564 0.28 -0.6 661,107 - PfGW456L13_564 0.28 -0.5 661,107 - PfGW456L13_564 0.28 +0.1 661,107 - PfGW456L13_564 0.28 +0.1 661,107 - PfGW456L13_564 0.28 +0.8 661,107 - PfGW456L13_564 0.28 +0.1 661,107 - PfGW456L13_564 0.28 +0.2 661,107 - PfGW456L13_564 0.28 -0.1 661,107 - PfGW456L13_564 0.28 -1.1 661,107 - PfGW456L13_564 0.28 -0.2 661,107 - PfGW456L13_564 0.28 -1.2 661,110 + PfGW456L13_564 0.29 +1.4 661,110 + PfGW456L13_564 0.29 -0.7 661,111 - PfGW456L13_564 0.29 -1.0 661,111 - PfGW456L13_564 0.29 -0.5 661,169 + PfGW456L13_564 0.32 +0.1 661,169 + PfGW456L13_564 0.32 -0.1 661,169 + PfGW456L13_564 0.32 -0.4 661,169 + PfGW456L13_564 0.32 -0.0 661,169 + PfGW456L13_564 0.32 -0.1 661,169 + PfGW456L13_564 0.32 +0.4 661,170 - PfGW456L13_564 0.32 -1.0 661,170 - PfGW456L13_564 0.32 -0.6 661,170 - PfGW456L13_564 0.32 -1.2 661,170 - PfGW456L13_564 0.32 -0.8 661,170 - PfGW456L13_564 0.32 -0.6 661,170 - PfGW456L13_564 0.32 -0.7 661,170 - PfGW456L13_564 0.32 -0.6
Or see this region's nucleotide sequence