Experiment: Chloride 400 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_306 and PfGW456L13_307 overlap by 4 nucleotides PfGW456L13_307 and PfGW456L13_308 are separated by 222 nucleotides PfGW456L13_308 and PfGW456L13_309 are separated by 217 nucleotides
PfGW456L13_306 - Twin-arginine translocation protein TatC, at 354,949 to 355,743
_306
PfGW456L13_307 - Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-), at 355,740 to 356,447
_307
PfGW456L13_308 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 356,670 to 358,586
_308
PfGW456L13_309 - Extracellular ribonuclease precursor (EC 3.1.-.-), at 358,804 to 361,395
_309
Position (kb) 356
357
358
359 Strain fitness (log2 ratio) -1
0
1
2 at 356.068 kb on - strand, within PfGW456L13_307 at 356.132 kb on - strand, within PfGW456L13_307 at 356.269 kb on - strand, within PfGW456L13_307 at 356.446 kb on - strand at 356.446 kb on - strand at 356.495 kb on + strand at 356.495 kb on + strand at 356.495 kb on + strand at 356.603 kb on + strand at 356.604 kb on - strand at 356.604 kb on - strand at 356.638 kb on + strand at 356.638 kb on + strand at 356.638 kb on + strand at 356.673 kb on + strand at 356.673 kb on + strand at 356.673 kb on + strand at 356.673 kb on + strand at 356.673 kb on + strand at 356.673 kb on + strand at 356.673 kb on + strand at 356.673 kb on + strand at 356.673 kb on + strand at 356.673 kb on + strand at 356.673 kb on + strand at 356.673 kb on + strand at 356.673 kb on + strand at 356.674 kb on - strand at 356.674 kb on - strand at 356.674 kb on - strand at 356.674 kb on - strand at 356.674 kb on - strand at 356.674 kb on - strand at 356.674 kb on - strand at 356.674 kb on - strand at 356.674 kb on - strand at 356.674 kb on - strand at 356.674 kb on - strand at 356.684 kb on - strand at 357.228 kb on + strand, within PfGW456L13_308 at 357.229 kb on - strand, within PfGW456L13_308 at 357.234 kb on + strand, within PfGW456L13_308 at 357.234 kb on + strand, within PfGW456L13_308 at 357.234 kb on + strand, within PfGW456L13_308 at 357.235 kb on - strand, within PfGW456L13_308 at 357.235 kb on - strand, within PfGW456L13_308 at 357.235 kb on - strand, within PfGW456L13_308 at 358.607 kb on + strand at 358.608 kb on - strand at 358.690 kb on - strand at 358.706 kb on - strand at 358.706 kb on - strand at 358.706 kb on - strand at 358.710 kb on + strand at 358.711 kb on - strand at 358.711 kb on - strand at 358.714 kb on + strand at 358.714 kb on + strand at 358.714 kb on + strand at 358.714 kb on + strand at 358.714 kb on + strand at 358.714 kb on + strand at 358.715 kb on - strand at 358.723 kb on - strand at 358.728 kb on + strand at 358.728 kb on + strand at 358.729 kb on - strand at 358.744 kb on + strand at 358.744 kb on + strand at 358.744 kb on + strand at 358.744 kb on + strand at 358.744 kb on + strand at 358.745 kb on - strand at 358.745 kb on - strand at 358.745 kb on - strand at 358.745 kb on - strand at 358.745 kb on - strand at 358.745 kb on - strand at 358.745 kb on - strand at 358.745 kb on - strand at 358.745 kb on - strand at 358.769 kb on + strand at 358.769 kb on + strand at 358.770 kb on - strand at 358.773 kb on + strand at 358.774 kb on - strand at 358.774 kb on - strand at 358.879 kb on + strand at 358.879 kb on + strand at 358.880 kb on - strand at 358.880 kb on - strand at 358.880 kb on - strand at 359.056 kb on + strand at 359.083 kb on - strand, within PfGW456L13_309 at 359.089 kb on - strand, within PfGW456L13_309 at 359.107 kb on - strand, within PfGW456L13_309 at 359.136 kb on - strand, within PfGW456L13_309 at 359.184 kb on - strand, within PfGW456L13_309 at 359.184 kb on - strand, within PfGW456L13_309 at 359.184 kb on - strand, within PfGW456L13_309 at 359.252 kb on - strand, within PfGW456L13_309 at 359.252 kb on - strand, within PfGW456L13_309 at 359.270 kb on - strand, within PfGW456L13_309 at 359.298 kb on - strand, within PfGW456L13_309 at 359.360 kb on - strand, within PfGW456L13_309 at 359.395 kb on - strand, within PfGW456L13_309 at 359.400 kb on - strand, within PfGW456L13_309 at 359.513 kb on + strand, within PfGW456L13_309 at 359.513 kb on + strand, within PfGW456L13_309 at 359.514 kb on - strand, within PfGW456L13_309 at 359.514 kb on - strand, within PfGW456L13_309
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 400 mM remove 356,068 - PfGW456L13_307 0.46 +0.4 356,132 - PfGW456L13_307 0.55 +1.5 356,269 - PfGW456L13_307 0.75 -0.6 356,446 - +0.3 356,446 - +0.6 356,495 + +0.1 356,495 + -1.1 356,495 + -0.3 356,603 + +0.2 356,604 - -1.3 356,604 - -1.3 356,638 + +0.0 356,638 + -1.5 356,638 + +0.0 356,673 + +0.3 356,673 + +0.5 356,673 + +0.9 356,673 + +0.0 356,673 + -0.5 356,673 + +0.5 356,673 + -0.3 356,673 + +0.1 356,673 + -0.8 356,673 + +0.4 356,673 + +0.6 356,673 + +1.2 356,673 + -0.3 356,674 - +0.2 356,674 - +0.2 356,674 - -0.4 356,674 - -0.3 356,674 - +0.7 356,674 - -1.2 356,674 - -0.3 356,674 - -0.0 356,674 - +1.0 356,674 - +0.3 356,674 - -0.2 356,684 - -0.2 357,228 + PfGW456L13_308 0.29 +0.0 357,229 - PfGW456L13_308 0.29 -0.4 357,234 + PfGW456L13_308 0.29 -1.4 357,234 + PfGW456L13_308 0.29 -0.1 357,234 + PfGW456L13_308 0.29 -0.9 357,235 - PfGW456L13_308 0.29 -0.2 357,235 - PfGW456L13_308 0.29 -1.1 357,235 - PfGW456L13_308 0.29 -0.3 358,607 + +0.5 358,608 - -0.5 358,690 - -0.3 358,706 - +0.9 358,706 - +0.1 358,706 - +1.9 358,710 + +0.2 358,711 - -0.1 358,711 - +0.9 358,714 + -1.0 358,714 + -0.2 358,714 + -0.7 358,714 + +0.6 358,714 + -0.9 358,714 + -0.3 358,715 - -1.2 358,723 - +0.8 358,728 + +0.4 358,728 + -1.1 358,729 - -1.0 358,744 + -0.4 358,744 + +1.5 358,744 + -0.2 358,744 + +0.2 358,744 + -0.9 358,745 - +0.0 358,745 - +0.4 358,745 - -0.1 358,745 - +1.1 358,745 - +0.4 358,745 - -0.1 358,745 - +0.7 358,745 - +0.2 358,745 - +0.0 358,769 + -0.1 358,769 + +0.5 358,770 - -0.5 358,773 + +0.3 358,774 - -1.4 358,774 - +0.1 358,879 + +0.8 358,879 + -1.4 358,880 - +0.8 358,880 - +0.3 358,880 - +1.0 359,056 + +0.4 359,083 - PfGW456L13_309 0.11 -0.3 359,089 - PfGW456L13_309 0.11 +1.0 359,107 - PfGW456L13_309 0.12 -0.1 359,136 - PfGW456L13_309 0.13 -1.1 359,184 - PfGW456L13_309 0.15 +0.9 359,184 - PfGW456L13_309 0.15 -0.8 359,184 - PfGW456L13_309 0.15 -0.1 359,252 - PfGW456L13_309 0.17 -0.2 359,252 - PfGW456L13_309 0.17 +0.6 359,270 - PfGW456L13_309 0.18 +0.1 359,298 - PfGW456L13_309 0.19 +0.6 359,360 - PfGW456L13_309 0.21 -0.4 359,395 - PfGW456L13_309 0.23 +1.1 359,400 - PfGW456L13_309 0.23 +0.9 359,513 + PfGW456L13_309 0.27 -0.8 359,513 + PfGW456L13_309 0.27 -0.3 359,514 - PfGW456L13_309 0.27 -0.3 359,514 - PfGW456L13_309 0.27 +0.3
Or see this region's nucleotide sequence