Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2816

Experiment: Chloride 400 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2814 and PfGW456L13_2815 are separated by 179 nucleotidesPfGW456L13_2815 and PfGW456L13_2816 overlap by 1 nucleotidesPfGW456L13_2816 and PfGW456L13_2817 overlap by 4 nucleotidesPfGW456L13_2817 and PfGW456L13_2818 overlap by 4 nucleotides PfGW456L13_2814 - Alkanesulfonates-binding protein, at 3,119,763 to 3,121,169 _2814 PfGW456L13_2815 - Alkanesulfonates transport system permease protein, at 3,121,349 to 3,122,089 _2815 PfGW456L13_2816 - Various polyols ABC transporter, ATP-binding component, at 3,122,089 to 3,122,937 _2816 PfGW456L13_2817 - HEAT repeat-containing protein, at 3,122,934 to 3,123,896 _2817 PfGW456L13_2818 - FIG028220: hypothetical protein co-occurring with HEAT repeat protein, at 3,123,893 to 3,124,171 _2818 Position (kb) 3122 3123Strain fitness (log2 ratio) -2 -1 0 1at 3121.142 kb on + strandat 3121.302 kb on + strandat 3121.302 kb on + strandat 3121.302 kb on + strandat 3121.303 kb on - strandat 3121.303 kb on - strandat 3121.303 kb on - strandat 3121.303 kb on - strandat 3121.303 kb on - strandat 3121.320 kb on - strandat 3121.362 kb on + strandat 3121.415 kb on + strandat 3121.415 kb on + strandat 3121.415 kb on + strandat 3121.416 kb on - strandat 3121.416 kb on - strandat 3121.940 kb on + strand, within PfGW456L13_2815at 3121.940 kb on + strand, within PfGW456L13_2815at 3121.940 kb on + strand, within PfGW456L13_2815at 3121.941 kb on - strand, within PfGW456L13_2815at 3121.941 kb on - strand, within PfGW456L13_2815at 3121.941 kb on - strand, within PfGW456L13_2815at 3121.941 kb on - strand, within PfGW456L13_2815at 3121.941 kb on - strand, within PfGW456L13_2815at 3121.941 kb on - strand, within PfGW456L13_2815at 3121.955 kb on + strand, within PfGW456L13_2815at 3121.955 kb on + strand, within PfGW456L13_2815at 3121.956 kb on - strand, within PfGW456L13_2815at 3121.970 kb on + strand, within PfGW456L13_2815at 3121.971 kb on - strand, within PfGW456L13_2815at 3122.119 kb on - strandat 3122.646 kb on + strand, within PfGW456L13_2816at 3122.953 kb on + strandat 3122.953 kb on + strandat 3123.014 kb on - strandat 3123.014 kb on - strandat 3123.227 kb on + strand, within PfGW456L13_2817at 3123.227 kb on + strand, within PfGW456L13_2817at 3123.296 kb on - strand, within PfGW456L13_2817at 3123.296 kb on - strand, within PfGW456L13_2817at 3123.815 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 400 mM
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3,121,142 + -0.8
3,121,302 + +0.9
3,121,302 + -0.6
3,121,302 + +0.2
3,121,303 - -0.2
3,121,303 - -0.3
3,121,303 - -0.7
3,121,303 - -1.9
3,121,303 - +0.4
3,121,320 - +0.3
3,121,362 + -0.4
3,121,415 + -0.1
3,121,415 + +1.0
3,121,415 + -0.1
3,121,416 - -0.2
3,121,416 - -0.5
3,121,940 + PfGW456L13_2815 0.80 +0.1
3,121,940 + PfGW456L13_2815 0.80 +0.6
3,121,940 + PfGW456L13_2815 0.80 +0.1
3,121,941 - PfGW456L13_2815 0.80 -0.4
3,121,941 - PfGW456L13_2815 0.80 -0.8
3,121,941 - PfGW456L13_2815 0.80 +0.6
3,121,941 - PfGW456L13_2815 0.80 +1.6
3,121,941 - PfGW456L13_2815 0.80 -0.5
3,121,941 - PfGW456L13_2815 0.80 -0.3
3,121,955 + PfGW456L13_2815 0.82 -0.7
3,121,955 + PfGW456L13_2815 0.82 +0.0
3,121,956 - PfGW456L13_2815 0.82 -0.6
3,121,970 + PfGW456L13_2815 0.84 -0.1
3,121,971 - PfGW456L13_2815 0.84 +0.1
3,122,119 - +0.8
3,122,646 + PfGW456L13_2816 0.66 -0.6
3,122,953 + +0.1
3,122,953 + -0.3
3,123,014 - -0.8
3,123,014 - +0.9
3,123,227 + PfGW456L13_2817 0.30 -0.6
3,123,227 + PfGW456L13_2817 0.30 -0.4
3,123,296 - PfGW456L13_2817 0.38 +0.1
3,123,296 - PfGW456L13_2817 0.38 +0.6
3,123,815 - +0.2

Or see this region's nucleotide sequence