Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2603

Experiment: Chloride 400 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2602 and PfGW456L13_2603 are separated by 237 nucleotidesPfGW456L13_2603 and PfGW456L13_2604 are separated by 11 nucleotides PfGW456L13_2602 - putative exported protein, at 2,891,638 to 2,895,276 _2602 PfGW456L13_2603 - Transcriptional regulator, MarR family, at 2,895,514 to 2,895,987 _2603 PfGW456L13_2604 - Outer membrane component of tripartite multidrug resistance system, at 2,895,999 to 2,897,453 _2604 Position (kb) 2895 2896Strain fitness (log2 ratio) -2 -1 0 1at 2894.803 kb on + strand, within PfGW456L13_2602at 2894.932 kb on + strandat 2894.933 kb on - strandat 2894.933 kb on - strandat 2894.933 kb on - strandat 2895.018 kb on + strandat 2895.019 kb on - strandat 2895.019 kb on - strandat 2895.019 kb on - strandat 2895.124 kb on - strandat 2895.124 kb on - strandat 2895.124 kb on - strandat 2895.124 kb on - strandat 2895.178 kb on - strandat 2895.178 kb on - strandat 2895.215 kb on - strandat 2895.259 kb on + strandat 2895.259 kb on + strandat 2895.260 kb on - strandat 2895.260 kb on - strandat 2895.274 kb on + strandat 2895.275 kb on - strandat 2895.275 kb on - strandat 2895.417 kb on + strandat 2895.433 kb on + strandat 2895.434 kb on - strandat 2895.434 kb on - strandat 2895.437 kb on + strandat 2895.437 kb on + strandat 2895.437 kb on + strandat 2895.437 kb on + strandat 2895.438 kb on - strandat 2895.460 kb on - strandat 2895.467 kb on - strandat 2895.492 kb on + strandat 2895.500 kb on + strandat 2895.500 kb on + strandat 2895.501 kb on - strandat 2895.692 kb on + strand, within PfGW456L13_2603at 2895.693 kb on - strand, within PfGW456L13_2603at 2895.974 kb on + strandat 2895.975 kb on - strandat 2895.993 kb on - strandat 2896.056 kb on + strandat 2896.380 kb on + strand, within PfGW456L13_2604at 2896.381 kb on - strand, within PfGW456L13_2604at 2896.416 kb on + strand, within PfGW456L13_2604at 2896.539 kb on + strand, within PfGW456L13_2604at 2896.539 kb on + strand, within PfGW456L13_2604at 2896.539 kb on + strandat 2896.540 kb on - strand, within PfGW456L13_2604at 2896.540 kb on - strand, within PfGW456L13_2604at 2896.540 kb on - strand, within PfGW456L13_2604at 2896.540 kb on - strand, within PfGW456L13_2604at 2896.657 kb on - strand, within PfGW456L13_2604at 2896.829 kb on - strand, within PfGW456L13_2604at 2896.938 kb on + strand, within PfGW456L13_2604at 2896.938 kb on + strand, within PfGW456L13_2604at 2896.939 kb on - strand, within PfGW456L13_2604

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 400 mM
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2,894,803 + PfGW456L13_2602 0.87 -0.5
2,894,932 + -0.7
2,894,933 - -2.7
2,894,933 - -1.0
2,894,933 - -0.7
2,895,018 + -0.6
2,895,019 - +0.8
2,895,019 - -0.8
2,895,019 - -0.4
2,895,124 - -2.2
2,895,124 - -0.3
2,895,124 - -1.2
2,895,124 - +0.1
2,895,178 - -1.0
2,895,178 - -1.1
2,895,215 - -1.4
2,895,259 + -1.7
2,895,259 + -0.2
2,895,260 - -0.2
2,895,260 - -1.7
2,895,274 + -0.9
2,895,275 - +0.3
2,895,275 - +0.8
2,895,417 + +1.2
2,895,433 + +1.0
2,895,434 - +0.5
2,895,434 - -0.1
2,895,437 + +0.5
2,895,437 + +0.4
2,895,437 + +0.3
2,895,437 + -0.2
2,895,438 - -0.0
2,895,460 - +0.1
2,895,467 - +0.7
2,895,492 + +0.5
2,895,500 + -0.7
2,895,500 + -0.6
2,895,501 - -0.1
2,895,692 + PfGW456L13_2603 0.38 +0.5
2,895,693 - PfGW456L13_2603 0.38 +0.3
2,895,974 + -1.0
2,895,975 - -0.5
2,895,993 - -2.3
2,896,056 + +0.9
2,896,380 + PfGW456L13_2604 0.26 +0.8
2,896,381 - PfGW456L13_2604 0.26 -0.1
2,896,416 + PfGW456L13_2604 0.29 -1.2
2,896,539 + PfGW456L13_2604 0.37 +0.4
2,896,539 + PfGW456L13_2604 0.37 -0.3
2,896,539 + -0.2
2,896,540 - PfGW456L13_2604 0.37 +1.6
2,896,540 - PfGW456L13_2604 0.37 -0.5
2,896,540 - PfGW456L13_2604 0.37 +0.8
2,896,540 - PfGW456L13_2604 0.37 +0.5
2,896,657 - PfGW456L13_2604 0.45 -1.0
2,896,829 - PfGW456L13_2604 0.57 -0.4
2,896,938 + PfGW456L13_2604 0.65 +0.5
2,896,938 + PfGW456L13_2604 0.65 -0.0
2,896,939 - PfGW456L13_2604 0.65 -0.7

Or see this region's nucleotide sequence