Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4631 and Echvi_4632 are separated by 285 nucleotides Echvi_4632 and Echvi_4633 are separated by 127 nucleotides
Echvi_4631: Echvi_4631 - (p)ppGpp synthetase, RelA/SpoT family, at 5,540,233 to 5,542,455
_4631
Echvi_4632: Echvi_4632 - tRNA, at 5,542,741 to 5,542,825
_4632
Echvi_4633: Echvi_4633 - trigger factor, at 5,542,953 to 5,544,281
_4633
Position (kb) 5542
5543 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 5541.769 kb on - strand, within Echvi_4631 at 5541.792 kb on + strand, within Echvi_4631 at 5541.792 kb on + strand, within Echvi_4631 at 5541.817 kb on - strand, within Echvi_4631 at 5541.833 kb on + strand, within Echvi_4631 at 5541.888 kb on + strand, within Echvi_4631 at 5541.888 kb on + strand, within Echvi_4631 at 5541.888 kb on + strand, within Echvi_4631 at 5541.890 kb on + strand, within Echvi_4631 at 5541.890 kb on + strand, within Echvi_4631 at 5541.891 kb on - strand, within Echvi_4631 at 5541.891 kb on - strand, within Echvi_4631 at 5541.920 kb on + strand, within Echvi_4631 at 5541.926 kb on + strand, within Echvi_4631 at 5541.926 kb on + strand, within Echvi_4631 at 5541.926 kb on + strand, within Echvi_4631 at 5541.926 kb on + strand, within Echvi_4631 at 5541.927 kb on - strand, within Echvi_4631 at 5541.927 kb on - strand, within Echvi_4631 at 5541.958 kb on - strand, within Echvi_4631 at 5542.182 kb on + strand, within Echvi_4631 at 5542.224 kb on + strand, within Echvi_4631 at 5542.224 kb on + strand, within Echvi_4631 at 5542.227 kb on + strand, within Echvi_4631 at 5542.228 kb on - strand at 5542.277 kb on + strand at 5542.277 kb on + strand at 5542.281 kb on + strand at 5542.281 kb on + strand at 5542.283 kb on + strand at 5542.283 kb on + strand at 5542.284 kb on - strand at 5542.432 kb on + strand at 5542.432 kb on + strand at 5542.444 kb on + strand at 5542.455 kb on + strand at 5542.455 kb on + strand at 5542.461 kb on + strand at 5542.461 kb on + strand at 5542.462 kb on - strand at 5542.462 kb on - strand at 5542.462 kb on - strand at 5542.464 kb on + strand at 5542.465 kb on - strand at 5542.504 kb on - strand at 5542.507 kb on + strand at 5542.507 kb on + strand at 5542.507 kb on + strand at 5542.508 kb on - strand at 5542.825 kb on - strand at 5542.874 kb on + strand at 5542.875 kb on - strand at 5542.966 kb on + strand at 5543.022 kb on + strand at 5543.022 kb on + strand at 5543.056 kb on - strand at 5543.184 kb on + strand, within Echvi_4633 at 5543.185 kb on - strand, within Echvi_4633 at 5543.186 kb on + strand, within Echvi_4633 at 5543.187 kb on - strand, within Echvi_4633 at 5543.249 kb on + strand, within Echvi_4633 at 5543.250 kb on - strand, within Echvi_4633 at 5543.288 kb on + strand, within Echvi_4633 at 5543.288 kb on + strand, within Echvi_4633 at 5543.289 kb on - strand, within Echvi_4633 at 5543.293 kb on + strand, within Echvi_4633 at 5543.294 kb on - strand, within Echvi_4633 at 5543.399 kb on - strand, within Echvi_4633 at 5543.434 kb on + strand, within Echvi_4633 at 5543.435 kb on - strand, within Echvi_4633 at 5543.435 kb on - strand, within Echvi_4633 at 5543.705 kb on + strand, within Echvi_4633 at 5543.807 kb on + strand, within Echvi_4633
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 5,541,769 - Echvi_4631 0.69 -0.9 5,541,792 + Echvi_4631 0.70 -5.5 5,541,792 + Echvi_4631 0.70 -4.5 5,541,817 - Echvi_4631 0.71 -2.1 5,541,833 + Echvi_4631 0.72 -1.9 5,541,888 + Echvi_4631 0.74 -3.3 5,541,888 + Echvi_4631 0.74 -4.2 5,541,888 + Echvi_4631 0.74 -4.0 5,541,890 + Echvi_4631 0.75 -0.9 5,541,890 + Echvi_4631 0.75 -2.5 5,541,891 - Echvi_4631 0.75 -2.6 5,541,891 - Echvi_4631 0.75 -2.1 5,541,920 + Echvi_4631 0.76 -3.9 5,541,926 + Echvi_4631 0.76 -2.5 5,541,926 + Echvi_4631 0.76 -2.1 5,541,926 + Echvi_4631 0.76 -2.6 5,541,926 + Echvi_4631 0.76 -3.4 5,541,927 - Echvi_4631 0.76 -3.6 5,541,927 - Echvi_4631 0.76 -2.7 5,541,958 - Echvi_4631 0.78 -0.3 5,542,182 + Echvi_4631 0.88 -3.4 5,542,224 + Echvi_4631 0.90 -2.7 5,542,224 + Echvi_4631 0.90 -3.3 5,542,227 + Echvi_4631 0.90 +0.1 5,542,228 - +1.7 5,542,277 + -2.7 5,542,277 + -1.8 5,542,281 + -2.2 5,542,281 + -0.3 5,542,283 + -2.6 5,542,283 + -0.5 5,542,284 - -1.8 5,542,432 + +1.1 5,542,432 + -0.7 5,542,444 + -0.2 5,542,455 + -1.6 5,542,455 + +0.4 5,542,461 + -0.8 5,542,461 + -0.9 5,542,462 - -0.3 5,542,462 - +0.1 5,542,462 - -0.2 5,542,464 + -1.0 5,542,465 - +0.9 5,542,504 - -0.3 5,542,507 + -1.1 5,542,507 + +0.4 5,542,507 + -1.7 5,542,508 - +0.4 5,542,825 - -0.7 5,542,874 + +0.1 5,542,875 - -2.0 5,542,966 + -0.2 5,543,022 + -0.1 5,543,022 + -0.9 5,543,056 - -0.3 5,543,184 + Echvi_4633 0.17 -0.9 5,543,185 - Echvi_4633 0.17 +1.1 5,543,186 + Echvi_4633 0.18 +0.1 5,543,187 - Echvi_4633 0.18 -0.0 5,543,249 + Echvi_4633 0.22 +0.0 5,543,250 - Echvi_4633 0.22 -0.6 5,543,288 + Echvi_4633 0.25 -2.1 5,543,288 + Echvi_4633 0.25 -1.4 5,543,289 - Echvi_4633 0.25 -1.6 5,543,293 + Echvi_4633 0.26 -1.3 5,543,294 - Echvi_4633 0.26 +1.0 5,543,399 - Echvi_4633 0.34 -0.5 5,543,434 + Echvi_4633 0.36 +1.7 5,543,435 - Echvi_4633 0.36 -1.3 5,543,435 - Echvi_4633 0.36 +0.3 5,543,705 + Echvi_4633 0.57 -0.5 5,543,807 + Echvi_4633 0.64 +1.1
Or see this region's nucleotide sequence