Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3834

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3833 and Echvi_3834 are separated by 85 nucleotides Echvi_3833: Echvi_3833 - 2-isopropylmalate synthase (EC 2.3.3.13) (from data), at 4,580,297 to 4,581,469 _3833 Echvi_3834: Echvi_3834 - signal recognition particle protein, at 4,581,555 to 4,582,895 _3834 Position (kb) 4581 4582 4583Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 4580.568 kb on - strand, within Echvi_3833at 4580.638 kb on + strand, within Echvi_3833at 4580.676 kb on + strand, within Echvi_3833at 4580.676 kb on + strand, within Echvi_3833at 4580.715 kb on - strand, within Echvi_3833at 4580.747 kb on + strand, within Echvi_3833at 4580.747 kb on + strand, within Echvi_3833at 4580.748 kb on - strand, within Echvi_3833at 4580.850 kb on + strand, within Echvi_3833at 4580.851 kb on - strand, within Echvi_3833at 4580.851 kb on - strand, within Echvi_3833at 4580.851 kb on - strand, within Echvi_3833at 4580.851 kb on - strand, within Echvi_3833at 4580.851 kb on - strand, within Echvi_3833at 4580.856 kb on - strand, within Echvi_3833at 4580.871 kb on + strand, within Echvi_3833at 4580.871 kb on + strand, within Echvi_3833at 4580.871 kb on + strand, within Echvi_3833at 4580.871 kb on + strand, within Echvi_3833at 4580.872 kb on - strand, within Echvi_3833at 4580.872 kb on - strand, within Echvi_3833at 4580.881 kb on - strand, within Echvi_3833at 4580.881 kb on - strand, within Echvi_3833at 4580.912 kb on - strand, within Echvi_3833at 4580.912 kb on - strand, within Echvi_3833at 4580.943 kb on + strand, within Echvi_3833at 4580.981 kb on - strand, within Echvi_3833at 4581.056 kb on - strand, within Echvi_3833at 4581.068 kb on + strand, within Echvi_3833at 4581.094 kb on - strand, within Echvi_3833at 4581.124 kb on + strand, within Echvi_3833at 4581.125 kb on - strand, within Echvi_3833at 4581.125 kb on - strand, within Echvi_3833at 4581.148 kb on + strand, within Echvi_3833at 4581.160 kb on - strand, within Echvi_3833at 4581.160 kb on - strand, within Echvi_3833at 4581.252 kb on + strand, within Echvi_3833at 4581.287 kb on - strand, within Echvi_3833at 4581.334 kb on + strand, within Echvi_3833at 4581.334 kb on + strand, within Echvi_3833at 4581.335 kb on - strand, within Echvi_3833at 4581.335 kb on - strand, within Echvi_3833at 4581.335 kb on - strand, within Echvi_3833at 4581.365 kb on + strandat 4581.366 kb on - strandat 4581.366 kb on - strandat 4581.556 kb on + strandat 4582.911 kb on - strandat 4582.932 kb on - strandat 4582.959 kb on + strandat 4583.004 kb on - strandat 4583.088 kb on + strandat 4583.100 kb on - strandat 4583.130 kb on - strandat 4583.367 kb on + strandat 4583.374 kb on + strandat 4583.413 kb on - strandat 4583.417 kb on - strandat 4583.521 kb on + strandat 4583.664 kb on + strandat 4583.716 kb on - strandat 4583.716 kb on - strandat 4583.731 kb on + strandat 4583.829 kb on + strandat 4583.831 kb on + strandat 4583.831 kb on + strandat 4583.831 kb on + strandat 4583.831 kb on + strandat 4583.832 kb on - strandat 4583.832 kb on - strandat 4583.832 kb on - strandat 4583.832 kb on - strandat 4583.832 kb on - strandat 4583.852 kb on + strandat 4583.853 kb on - strandat 4583.853 kb on - strandat 4583.853 kb on - strandat 4583.882 kb on - strandat 4583.882 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,580,568 - Echvi_3833 0.23 -3.2
4,580,638 + Echvi_3833 0.29 -2.8
4,580,676 + Echvi_3833 0.32 -2.6
4,580,676 + Echvi_3833 0.32 -4.7
4,580,715 - Echvi_3833 0.36 -3.1
4,580,747 + Echvi_3833 0.38 -2.8
4,580,747 + Echvi_3833 0.38 -2.4
4,580,748 - Echvi_3833 0.38 -2.1
4,580,850 + Echvi_3833 0.47 -2.8
4,580,851 - Echvi_3833 0.47 -3.7
4,580,851 - Echvi_3833 0.47 -2.1
4,580,851 - Echvi_3833 0.47 -3.1
4,580,851 - Echvi_3833 0.47 -3.2
4,580,851 - Echvi_3833 0.47 -3.4
4,580,856 - Echvi_3833 0.48 -2.7
4,580,871 + Echvi_3833 0.49 +1.6
4,580,871 + Echvi_3833 0.49 -2.1
4,580,871 + Echvi_3833 0.49 -1.0
4,580,871 + Echvi_3833 0.49 -1.8
4,580,872 - Echvi_3833 0.49 -2.4
4,580,872 - Echvi_3833 0.49 -2.9
4,580,881 - Echvi_3833 0.50 -1.4
4,580,881 - Echvi_3833 0.50 -2.3
4,580,912 - Echvi_3833 0.52 -4.9
4,580,912 - Echvi_3833 0.52 -4.6
4,580,943 + Echvi_3833 0.55 -2.4
4,580,981 - Echvi_3833 0.58 -1.8
4,581,056 - Echvi_3833 0.65 -2.4
4,581,068 + Echvi_3833 0.66 -1.8
4,581,094 - Echvi_3833 0.68 -2.0
4,581,124 + Echvi_3833 0.71 -1.3
4,581,125 - Echvi_3833 0.71 -4.0
4,581,125 - Echvi_3833 0.71 -2.9
4,581,148 + Echvi_3833 0.73 -1.6
4,581,160 - Echvi_3833 0.74 -4.0
4,581,160 - Echvi_3833 0.74 -0.0
4,581,252 + Echvi_3833 0.81 -1.0
4,581,287 - Echvi_3833 0.84 -2.9
4,581,334 + Echvi_3833 0.88 -3.1
4,581,334 + Echvi_3833 0.88 -2.3
4,581,335 - Echvi_3833 0.88 -1.4
4,581,335 - Echvi_3833 0.88 -2.4
4,581,335 - Echvi_3833 0.88 -1.6
4,581,365 + -2.4
4,581,366 - -3.0
4,581,366 - -4.3
4,581,556 + +1.8
4,582,911 - +0.2
4,582,932 - -0.1
4,582,959 + -0.8
4,583,004 - +0.0
4,583,088 + +0.5
4,583,100 - +1.0
4,583,130 - +0.6
4,583,367 + +0.2
4,583,374 + -0.4
4,583,413 - -0.7
4,583,417 - -0.8
4,583,521 + -2.4
4,583,664 + +1.6
4,583,716 - -0.8
4,583,716 - +0.2
4,583,731 + -1.8
4,583,829 + -2.1
4,583,831 + -1.3
4,583,831 + -1.3
4,583,831 + -0.0
4,583,831 + -0.0
4,583,832 - -2.6
4,583,832 - +3.1
4,583,832 - +0.7
4,583,832 - -0.9
4,583,832 - +0.8
4,583,852 + +0.1
4,583,853 - -0.9
4,583,853 - -0.7
4,583,853 - -0.3
4,583,882 - -1.5
4,583,882 - -0.3

Or see this region's nucleotide sequence