Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3833 and Echvi_3834 are separated by 85 nucleotides
Echvi_3833: Echvi_3833 - 2-isopropylmalate synthase (EC 2.3.3.13) (from data) , at 4,580,297 to 4,581,469
_3833
Echvi_3834: Echvi_3834 - signal recognition particle protein, at 4,581,555 to 4,582,895
_3834
Position (kb)
4581
4582
4583 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 4580.568 kb on - strand, within Echvi_3833 at 4580.638 kb on + strand, within Echvi_3833 at 4580.676 kb on + strand, within Echvi_3833 at 4580.676 kb on + strand, within Echvi_3833 at 4580.715 kb on - strand, within Echvi_3833 at 4580.747 kb on + strand, within Echvi_3833 at 4580.747 kb on + strand, within Echvi_3833 at 4580.748 kb on - strand, within Echvi_3833 at 4580.850 kb on + strand, within Echvi_3833 at 4580.851 kb on - strand, within Echvi_3833 at 4580.851 kb on - strand, within Echvi_3833 at 4580.851 kb on - strand, within Echvi_3833 at 4580.851 kb on - strand, within Echvi_3833 at 4580.851 kb on - strand, within Echvi_3833 at 4580.856 kb on - strand, within Echvi_3833 at 4580.871 kb on + strand, within Echvi_3833 at 4580.871 kb on + strand, within Echvi_3833 at 4580.871 kb on + strand, within Echvi_3833 at 4580.871 kb on + strand, within Echvi_3833 at 4580.872 kb on - strand, within Echvi_3833 at 4580.872 kb on - strand, within Echvi_3833 at 4580.881 kb on - strand, within Echvi_3833 at 4580.881 kb on - strand, within Echvi_3833 at 4580.912 kb on - strand, within Echvi_3833 at 4580.912 kb on - strand, within Echvi_3833 at 4580.943 kb on + strand, within Echvi_3833 at 4580.981 kb on - strand, within Echvi_3833 at 4581.056 kb on - strand, within Echvi_3833 at 4581.068 kb on + strand, within Echvi_3833 at 4581.094 kb on - strand, within Echvi_3833 at 4581.124 kb on + strand, within Echvi_3833 at 4581.125 kb on - strand, within Echvi_3833 at 4581.125 kb on - strand, within Echvi_3833 at 4581.148 kb on + strand, within Echvi_3833 at 4581.160 kb on - strand, within Echvi_3833 at 4581.160 kb on - strand, within Echvi_3833 at 4581.252 kb on + strand, within Echvi_3833 at 4581.287 kb on - strand, within Echvi_3833 at 4581.334 kb on + strand, within Echvi_3833 at 4581.334 kb on + strand, within Echvi_3833 at 4581.335 kb on - strand, within Echvi_3833 at 4581.335 kb on - strand, within Echvi_3833 at 4581.335 kb on - strand, within Echvi_3833 at 4581.365 kb on + strand at 4581.366 kb on - strand at 4581.366 kb on - strand at 4581.556 kb on + strand at 4582.911 kb on - strand at 4582.932 kb on - strand at 4582.959 kb on + strand at 4583.004 kb on - strand at 4583.088 kb on + strand at 4583.100 kb on - strand at 4583.130 kb on - strand at 4583.367 kb on + strand at 4583.374 kb on + strand at 4583.413 kb on - strand at 4583.417 kb on - strand at 4583.521 kb on + strand at 4583.664 kb on + strand at 4583.716 kb on - strand at 4583.716 kb on - strand at 4583.731 kb on + strand at 4583.829 kb on + strand at 4583.831 kb on + strand at 4583.831 kb on + strand at 4583.831 kb on + strand at 4583.831 kb on + strand at 4583.832 kb on - strand at 4583.832 kb on - strand at 4583.832 kb on - strand at 4583.832 kb on - strand at 4583.832 kb on - strand at 4583.852 kb on + strand at 4583.853 kb on - strand at 4583.853 kb on - strand at 4583.853 kb on - strand at 4583.882 kb on - strand at 4583.882 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,580,568 - Echvi_3833 0.23 -3.2 4,580,638 + Echvi_3833 0.29 -2.8 4,580,676 + Echvi_3833 0.32 -2.6 4,580,676 + Echvi_3833 0.32 -4.7 4,580,715 - Echvi_3833 0.36 -3.1 4,580,747 + Echvi_3833 0.38 -2.8 4,580,747 + Echvi_3833 0.38 -2.4 4,580,748 - Echvi_3833 0.38 -2.1 4,580,850 + Echvi_3833 0.47 -2.8 4,580,851 - Echvi_3833 0.47 -3.7 4,580,851 - Echvi_3833 0.47 -2.1 4,580,851 - Echvi_3833 0.47 -3.1 4,580,851 - Echvi_3833 0.47 -3.2 4,580,851 - Echvi_3833 0.47 -3.4 4,580,856 - Echvi_3833 0.48 -2.7 4,580,871 + Echvi_3833 0.49 +1.6 4,580,871 + Echvi_3833 0.49 -2.1 4,580,871 + Echvi_3833 0.49 -1.0 4,580,871 + Echvi_3833 0.49 -1.8 4,580,872 - Echvi_3833 0.49 -2.4 4,580,872 - Echvi_3833 0.49 -2.9 4,580,881 - Echvi_3833 0.50 -1.4 4,580,881 - Echvi_3833 0.50 -2.3 4,580,912 - Echvi_3833 0.52 -4.9 4,580,912 - Echvi_3833 0.52 -4.6 4,580,943 + Echvi_3833 0.55 -2.4 4,580,981 - Echvi_3833 0.58 -1.8 4,581,056 - Echvi_3833 0.65 -2.4 4,581,068 + Echvi_3833 0.66 -1.8 4,581,094 - Echvi_3833 0.68 -2.0 4,581,124 + Echvi_3833 0.71 -1.3 4,581,125 - Echvi_3833 0.71 -4.0 4,581,125 - Echvi_3833 0.71 -2.9 4,581,148 + Echvi_3833 0.73 -1.6 4,581,160 - Echvi_3833 0.74 -4.0 4,581,160 - Echvi_3833 0.74 -0.0 4,581,252 + Echvi_3833 0.81 -1.0 4,581,287 - Echvi_3833 0.84 -2.9 4,581,334 + Echvi_3833 0.88 -3.1 4,581,334 + Echvi_3833 0.88 -2.3 4,581,335 - Echvi_3833 0.88 -1.4 4,581,335 - Echvi_3833 0.88 -2.4 4,581,335 - Echvi_3833 0.88 -1.6 4,581,365 + -2.4 4,581,366 - -3.0 4,581,366 - -4.3 4,581,556 + +1.8 4,582,911 - +0.2 4,582,932 - -0.1 4,582,959 + -0.8 4,583,004 - +0.0 4,583,088 + +0.5 4,583,100 - +1.0 4,583,130 - +0.6 4,583,367 + +0.2 4,583,374 + -0.4 4,583,413 - -0.7 4,583,417 - -0.8 4,583,521 + -2.4 4,583,664 + +1.6 4,583,716 - -0.8 4,583,716 - +0.2 4,583,731 + -1.8 4,583,829 + -2.1 4,583,831 + -1.3 4,583,831 + -1.3 4,583,831 + -0.0 4,583,831 + -0.0 4,583,832 - -2.6 4,583,832 - +3.1 4,583,832 - +0.7 4,583,832 - -0.9 4,583,832 - +0.8 4,583,852 + +0.1 4,583,853 - -0.9 4,583,853 - -0.7 4,583,853 - -0.3 4,583,882 - -1.5 4,583,882 - -0.3
Or see this region's nucleotide sequence