Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2363

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2362 and Echvi_2363 are separated by 372 nucleotidesEchvi_2363 and Echvi_2364 overlap by 4 nucleotides Echvi_2362: Echvi_2362 - hypothetical protein, at 2,801,405 to 2,802,133 _2362 Echvi_2363: Echvi_2363 - Predicted ring-cleavage extradiol dioxygenase, at 2,802,506 to 2,802,895 _2363 Echvi_2364: Echvi_2364 - magnesium Mg(2+) and cobalt Co(2+) transport protein (corA), at 2,802,892 to 2,803,914 _2364 Position (kb) 2802 2803Strain fitness (log2 ratio) -2 -1 0 1 2at 2801.509 kb on + strand, within Echvi_2362at 2801.510 kb on - strand, within Echvi_2362at 2801.533 kb on + strand, within Echvi_2362at 2801.534 kb on - strand, within Echvi_2362at 2801.610 kb on + strand, within Echvi_2362at 2801.610 kb on + strand, within Echvi_2362at 2801.611 kb on - strand, within Echvi_2362at 2801.611 kb on - strand, within Echvi_2362at 2801.611 kb on - strand, within Echvi_2362at 2801.611 kb on - strand, within Echvi_2362at 2801.611 kb on - strand, within Echvi_2362at 2801.612 kb on + strand, within Echvi_2362at 2801.620 kb on + strand, within Echvi_2362at 2801.620 kb on + strand, within Echvi_2362at 2801.642 kb on + strand, within Echvi_2362at 2801.668 kb on - strand, within Echvi_2362at 2801.668 kb on - strand, within Echvi_2362at 2801.776 kb on + strand, within Echvi_2362at 2801.811 kb on + strand, within Echvi_2362at 2801.812 kb on - strand, within Echvi_2362at 2801.855 kb on - strand, within Echvi_2362at 2801.855 kb on - strand, within Echvi_2362at 2801.856 kb on + strand, within Echvi_2362at 2801.856 kb on + strand, within Echvi_2362at 2801.856 kb on + strand, within Echvi_2362at 2801.856 kb on + strand, within Echvi_2362at 2801.856 kb on + strand, within Echvi_2362at 2801.857 kb on - strand, within Echvi_2362at 2801.857 kb on - strand, within Echvi_2362at 2801.866 kb on + strand, within Echvi_2362at 2801.867 kb on - strand, within Echvi_2362at 2801.867 kb on - strand, within Echvi_2362at 2801.873 kb on + strand, within Echvi_2362at 2801.873 kb on + strand, within Echvi_2362at 2801.900 kb on + strand, within Echvi_2362at 2801.900 kb on + strand, within Echvi_2362at 2801.936 kb on + strand, within Echvi_2362at 2801.936 kb on + strand, within Echvi_2362at 2801.936 kb on + strand, within Echvi_2362at 2801.937 kb on - strand, within Echvi_2362at 2801.966 kb on + strand, within Echvi_2362at 2802.033 kb on + strand, within Echvi_2362at 2802.034 kb on - strand, within Echvi_2362at 2802.034 kb on - strand, within Echvi_2362at 2802.034 kb on - strand, within Echvi_2362at 2802.034 kb on - strand, within Echvi_2362at 2802.034 kb on - strand, within Echvi_2362at 2802.034 kb on - strand, within Echvi_2362at 2802.034 kb on - strand, within Echvi_2362at 2802.036 kb on - strand, within Echvi_2362at 2802.036 kb on - strand, within Echvi_2362at 2802.086 kb on - strandat 2802.112 kb on + strandat 2802.112 kb on + strandat 2802.116 kb on + strandat 2802.117 kb on - strandat 2802.164 kb on - strandat 2802.186 kb on - strandat 2802.211 kb on + strandat 2802.228 kb on - strandat 2802.237 kb on + strandat 2802.238 kb on - strandat 2802.238 kb on - strandat 2802.274 kb on + strandat 2802.275 kb on - strandat 2802.313 kb on + strandat 2802.327 kb on + strandat 2802.327 kb on + strandat 2802.327 kb on + strandat 2802.327 kb on + strandat 2802.328 kb on - strandat 2802.332 kb on + strandat 2802.332 kb on + strandat 2802.402 kb on - strandat 2802.430 kb on - strandat 2802.505 kb on + strandat 2802.505 kb on + strandat 2802.577 kb on + strand, within Echvi_2363at 2802.603 kb on + strand, within Echvi_2363at 2802.635 kb on + strand, within Echvi_2363at 2802.636 kb on - strand, within Echvi_2363at 2802.638 kb on - strand, within Echvi_2363at 2802.638 kb on - strand, within Echvi_2363at 2802.665 kb on + strand, within Echvi_2363at 2802.665 kb on + strand, within Echvi_2363at 2802.665 kb on + strand, within Echvi_2363at 2802.665 kb on + strand, within Echvi_2363at 2802.666 kb on - strand, within Echvi_2363at 2802.786 kb on + strand, within Echvi_2363at 2802.786 kb on + strand, within Echvi_2363at 2802.814 kb on - strand, within Echvi_2363at 2802.819 kb on + strand, within Echvi_2363at 2802.819 kb on + strand, within Echvi_2363at 2802.819 kb on + strand, within Echvi_2363at 2802.820 kb on - strand, within Echvi_2363at 2802.875 kb on - strandat 2802.883 kb on - strandat 2802.883 kb on - strandat 2802.885 kb on - strandat 2802.885 kb on - strandat 2802.940 kb on - strandat 2802.949 kb on + strandat 2802.969 kb on - strandat 2802.969 kb on - strandat 2802.969 kb on - strandat 2802.972 kb on + strandat 2802.974 kb on + strandat 2802.974 kb on + strandat 2802.975 kb on - strandat 2802.975 kb on - strandat 2802.996 kb on + strand, within Echvi_2364at 2802.996 kb on + strand, within Echvi_2364at 2803.016 kb on + strand, within Echvi_2364at 2803.020 kb on + strand, within Echvi_2364at 2803.112 kb on + strand, within Echvi_2364at 2803.112 kb on + strand, within Echvi_2364at 2803.112 kb on + strand, within Echvi_2364at 2803.113 kb on - strand, within Echvi_2364at 2803.113 kb on - strand, within Echvi_2364at 2803.115 kb on - strand, within Echvi_2364at 2803.115 kb on - strand, within Echvi_2364at 2803.162 kb on + strand, within Echvi_2364at 2803.162 kb on + strand, within Echvi_2364at 2803.171 kb on + strand, within Echvi_2364at 2803.171 kb on + strand, within Echvi_2364at 2803.176 kb on + strand, within Echvi_2364at 2803.176 kb on + strand, within Echvi_2364at 2803.176 kb on + strand, within Echvi_2364at 2803.177 kb on - strand, within Echvi_2364at 2803.177 kb on - strand, within Echvi_2364at 2803.177 kb on - strand, within Echvi_2364at 2803.177 kb on - strand, within Echvi_2364at 2803.177 kb on - strand, within Echvi_2364at 2803.184 kb on + strand, within Echvi_2364at 2803.185 kb on - strand, within Echvi_2364at 2803.185 kb on - strand, within Echvi_2364at 2803.188 kb on + strand, within Echvi_2364at 2803.188 kb on + strand, within Echvi_2364at 2803.189 kb on - strand, within Echvi_2364at 2803.195 kb on + strand, within Echvi_2364at 2803.196 kb on - strand, within Echvi_2364at 2803.197 kb on + strand, within Echvi_2364at 2803.197 kb on + strand, within Echvi_2364at 2803.198 kb on - strand, within Echvi_2364at 2803.198 kb on - strand, within Echvi_2364at 2803.199 kb on + strand, within Echvi_2364at 2803.199 kb on + strand, within Echvi_2364at 2803.199 kb on + strand, within Echvi_2364at 2803.200 kb on - strand, within Echvi_2364at 2803.200 kb on - strand, within Echvi_2364at 2803.200 kb on - strand, within Echvi_2364at 2803.200 kb on - strand, within Echvi_2364at 2803.200 kb on - strand, within Echvi_2364at 2803.200 kb on - strand, within Echvi_2364at 2803.264 kb on + strand, within Echvi_2364at 2803.273 kb on + strand, within Echvi_2364at 2803.273 kb on + strand, within Echvi_2364at 2803.274 kb on - strand, within Echvi_2364at 2803.377 kb on + strand, within Echvi_2364at 2803.432 kb on + strand, within Echvi_2364at 2803.432 kb on + strand, within Echvi_2364at 2803.433 kb on - strand, within Echvi_2364at 2803.436 kb on + strand, within Echvi_2364at 2803.436 kb on + strand, within Echvi_2364at 2803.437 kb on - strand, within Echvi_2364at 2803.437 kb on - strand, within Echvi_2364at 2803.437 kb on - strand, within Echvi_2364at 2803.437 kb on - strand, within Echvi_2364at 2803.445 kb on + strand, within Echvi_2364at 2803.446 kb on - strand, within Echvi_2364at 2803.512 kb on + strand, within Echvi_2364at 2803.513 kb on - strand, within Echvi_2364at 2803.567 kb on + strand, within Echvi_2364at 2803.567 kb on + strand, within Echvi_2364at 2803.602 kb on + strand, within Echvi_2364at 2803.608 kb on - strand, within Echvi_2364at 2803.632 kb on + strand, within Echvi_2364at 2803.632 kb on + strand, within Echvi_2364at 2803.633 kb on - strand, within Echvi_2364at 2803.633 kb on - strand, within Echvi_2364at 2803.677 kb on + strand, within Echvi_2364at 2803.678 kb on - strand, within Echvi_2364at 2803.687 kb on + strand, within Echvi_2364at 2803.688 kb on - strand, within Echvi_2364at 2803.688 kb on - strand, within Echvi_2364at 2803.688 kb on - strand, within Echvi_2364at 2803.695 kb on + strand, within Echvi_2364at 2803.758 kb on + strand, within Echvi_2364at 2803.759 kb on - strand, within Echvi_2364

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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2,801,509 + Echvi_2362 0.14 -0.3
2,801,510 - Echvi_2362 0.14 +0.7
2,801,533 + Echvi_2362 0.18 -0.0
2,801,534 - Echvi_2362 0.18 -0.1
2,801,610 + Echvi_2362 0.28 -1.7
2,801,610 + Echvi_2362 0.28 -0.7
2,801,611 - Echvi_2362 0.28 +0.3
2,801,611 - Echvi_2362 0.28 +0.5
2,801,611 - Echvi_2362 0.28 -1.0
2,801,611 - Echvi_2362 0.28 -0.6
2,801,611 - Echvi_2362 0.28 +0.2
2,801,612 + Echvi_2362 0.28 -0.2
2,801,620 + Echvi_2362 0.29 +1.3
2,801,620 + Echvi_2362 0.29 -1.1
2,801,642 + Echvi_2362 0.33 -0.1
2,801,668 - Echvi_2362 0.36 +0.1
2,801,668 - Echvi_2362 0.36 +1.2
2,801,776 + Echvi_2362 0.51 -0.6
2,801,811 + Echvi_2362 0.56 -1.7
2,801,812 - Echvi_2362 0.56 -0.7
2,801,855 - Echvi_2362 0.62 +0.1
2,801,855 - Echvi_2362 0.62 +1.0
2,801,856 + Echvi_2362 0.62 -1.0
2,801,856 + Echvi_2362 0.62 -0.0
2,801,856 + Echvi_2362 0.62 -0.4
2,801,856 + Echvi_2362 0.62 -1.2
2,801,856 + Echvi_2362 0.62 +0.3
2,801,857 - Echvi_2362 0.62 +1.0
2,801,857 - Echvi_2362 0.62 -0.7
2,801,866 + Echvi_2362 0.63 -0.2
2,801,867 - Echvi_2362 0.63 +0.3
2,801,867 - Echvi_2362 0.63 +0.2
2,801,873 + Echvi_2362 0.64 +0.4
2,801,873 + Echvi_2362 0.64 -1.0
2,801,900 + Echvi_2362 0.68 +0.0
2,801,900 + Echvi_2362 0.68 -0.1
2,801,936 + Echvi_2362 0.73 -0.9
2,801,936 + Echvi_2362 0.73 -0.5
2,801,936 + Echvi_2362 0.73 +0.5
2,801,937 - Echvi_2362 0.73 +0.6
2,801,966 + Echvi_2362 0.77 -0.5
2,802,033 + Echvi_2362 0.86 +0.6
2,802,034 - Echvi_2362 0.86 -0.7
2,802,034 - Echvi_2362 0.86 -1.1
2,802,034 - Echvi_2362 0.86 -1.3
2,802,034 - Echvi_2362 0.86 -0.6
2,802,034 - Echvi_2362 0.86 -0.5
2,802,034 - Echvi_2362 0.86 +1.2
2,802,034 - Echvi_2362 0.86 +0.1
2,802,036 - Echvi_2362 0.87 -1.0
2,802,036 - Echvi_2362 0.87 +0.3
2,802,086 - -0.3
2,802,112 + -1.1
2,802,112 + -1.6
2,802,116 + -0.6
2,802,117 - -0.2
2,802,164 - +0.5
2,802,186 - +0.0
2,802,211 + -0.1
2,802,228 - -0.4
2,802,237 + -0.2
2,802,238 - +0.4
2,802,238 - +0.1
2,802,274 + +0.4
2,802,275 - -0.5
2,802,313 + -0.6
2,802,327 + +1.3
2,802,327 + -0.7
2,802,327 + -1.6
2,802,327 + -0.2
2,802,328 - +0.0
2,802,332 + +1.1
2,802,332 + -0.1
2,802,402 - +0.9
2,802,430 - -1.7
2,802,505 + +0.0
2,802,505 + +0.4
2,802,577 + Echvi_2363 0.18 -0.6
2,802,603 + Echvi_2363 0.25 +1.2
2,802,635 + Echvi_2363 0.33 +1.3
2,802,636 - Echvi_2363 0.33 -0.4
2,802,638 - Echvi_2363 0.34 -1.3
2,802,638 - Echvi_2363 0.34 -0.4
2,802,665 + Echvi_2363 0.41 -0.4
2,802,665 + Echvi_2363 0.41 -0.2
2,802,665 + Echvi_2363 0.41 -2.0
2,802,665 + Echvi_2363 0.41 -0.3
2,802,666 - Echvi_2363 0.41 -0.1
2,802,786 + Echvi_2363 0.72 -0.6
2,802,786 + Echvi_2363 0.72 -0.6
2,802,814 - Echvi_2363 0.79 -0.2
2,802,819 + Echvi_2363 0.80 -0.8
2,802,819 + Echvi_2363 0.80 -1.0
2,802,819 + Echvi_2363 0.80 -1.7
2,802,820 - Echvi_2363 0.81 -0.1
2,802,875 - +0.4
2,802,883 - -1.3
2,802,883 - -0.9
2,802,885 - -1.9
2,802,885 - +1.0
2,802,940 - -0.6
2,802,949 + -0.4
2,802,969 - -0.9
2,802,969 - -0.3
2,802,969 - +1.2
2,802,972 + -0.3
2,802,974 + +0.1
2,802,974 + +0.6
2,802,975 - -0.6
2,802,975 - -0.7
2,802,996 + Echvi_2364 0.10 -1.7
2,802,996 + Echvi_2364 0.10 -1.9
2,803,016 + Echvi_2364 0.12 +1.4
2,803,020 + Echvi_2364 0.13 -1.3
2,803,112 + Echvi_2364 0.22 +0.2
2,803,112 + Echvi_2364 0.22 +0.3
2,803,112 + Echvi_2364 0.22 -1.6
2,803,113 - Echvi_2364 0.22 +0.5
2,803,113 - Echvi_2364 0.22 -0.8
2,803,115 - Echvi_2364 0.22 +0.5
2,803,115 - Echvi_2364 0.22 +0.0
2,803,162 + Echvi_2364 0.26 -0.2
2,803,162 + Echvi_2364 0.26 +0.4
2,803,171 + Echvi_2364 0.27 -0.1
2,803,171 + Echvi_2364 0.27 -1.9
2,803,176 + Echvi_2364 0.28 -0.4
2,803,176 + Echvi_2364 0.28 -0.2
2,803,176 + Echvi_2364 0.28 -1.1
2,803,177 - Echvi_2364 0.28 +1.7
2,803,177 - Echvi_2364 0.28 -0.6
2,803,177 - Echvi_2364 0.28 +1.0
2,803,177 - Echvi_2364 0.28 -0.6
2,803,177 - Echvi_2364 0.28 +0.1
2,803,184 + Echvi_2364 0.29 +1.7
2,803,185 - Echvi_2364 0.29 -0.3
2,803,185 - Echvi_2364 0.29 +0.1
2,803,188 + Echvi_2364 0.29 -0.5
2,803,188 + Echvi_2364 0.29 +0.7
2,803,189 - Echvi_2364 0.29 -2.0
2,803,195 + Echvi_2364 0.30 +0.8
2,803,196 - Echvi_2364 0.30 +0.8
2,803,197 + Echvi_2364 0.30 -0.1
2,803,197 + Echvi_2364 0.30 -0.4
2,803,198 - Echvi_2364 0.30 +0.5
2,803,198 - Echvi_2364 0.30 -2.7
2,803,199 + Echvi_2364 0.30 +0.9
2,803,199 + Echvi_2364 0.30 +0.6
2,803,199 + Echvi_2364 0.30 +0.7
2,803,200 - Echvi_2364 0.30 -1.1
2,803,200 - Echvi_2364 0.30 +0.7
2,803,200 - Echvi_2364 0.30 -0.3
2,803,200 - Echvi_2364 0.30 +0.1
2,803,200 - Echvi_2364 0.30 -0.1
2,803,200 - Echvi_2364 0.30 +0.6
2,803,264 + Echvi_2364 0.36 -0.4
2,803,273 + Echvi_2364 0.37 +0.1
2,803,273 + Echvi_2364 0.37 -0.6
2,803,274 - Echvi_2364 0.37 -0.2
2,803,377 + Echvi_2364 0.47 +0.7
2,803,432 + Echvi_2364 0.53 -1.1
2,803,432 + Echvi_2364 0.53 -0.0
2,803,433 - Echvi_2364 0.53 +0.4
2,803,436 + Echvi_2364 0.53 +0.1
2,803,436 + Echvi_2364 0.53 +0.0
2,803,437 - Echvi_2364 0.53 +1.0
2,803,437 - Echvi_2364 0.53 +0.3
2,803,437 - Echvi_2364 0.53 -0.6
2,803,437 - Echvi_2364 0.53 +0.2
2,803,445 + Echvi_2364 0.54 -0.2
2,803,446 - Echvi_2364 0.54 -0.3
2,803,512 + Echvi_2364 0.61 +0.6
2,803,513 - Echvi_2364 0.61 +2.3
2,803,567 + Echvi_2364 0.66 -0.8
2,803,567 + Echvi_2364 0.66 +2.4
2,803,602 + Echvi_2364 0.69 -0.9
2,803,608 - Echvi_2364 0.70 +0.5
2,803,632 + Echvi_2364 0.72 -0.1
2,803,632 + Echvi_2364 0.72 +0.1
2,803,633 - Echvi_2364 0.72 +0.1
2,803,633 - Echvi_2364 0.72 +1.3
2,803,677 + Echvi_2364 0.77 -0.4
2,803,678 - Echvi_2364 0.77 +0.7
2,803,687 + Echvi_2364 0.78 -1.2
2,803,688 - Echvi_2364 0.78 -1.6
2,803,688 - Echvi_2364 0.78 -0.9
2,803,688 - Echvi_2364 0.78 +0.2
2,803,695 + Echvi_2364 0.78 +1.7
2,803,758 + Echvi_2364 0.85 -0.4
2,803,759 - Echvi_2364 0.85 -0.4

Or see this region's nucleotide sequence