Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0841 and Echvi_0842 are separated by 281 nucleotides Echvi_0842 and Echvi_0843 are separated by 34 nucleotides Echvi_0843 and Echvi_0844 are separated by 596 nucleotides
Echvi_0841: Echvi_0841 - aspartyl-tRNA synthetase, bacterial type, at 960,553 to 962,307
_0841
Echvi_0842: Echvi_0842 - Membrane proteins related to metalloendopeptidases, at 962,589 to 963,887
_0842
Echvi_0843: Echvi_0843 - hypothetical protein, at 963,922 to 964,029
_0843
Echvi_0844: Echvi_0844 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 964,626 to 966,128
_0844
Position (kb)
962
963
964 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 962.345 kb on - strand at 962.365 kb on - strand at 962.367 kb on + strand at 962.368 kb on - strand at 962.368 kb on - strand at 962.371 kb on - strand at 962.371 kb on - strand at 962.371 kb on - strand at 962.402 kb on + strand at 962.403 kb on - strand at 962.403 kb on - strand at 962.424 kb on + strand at 962.510 kb on + strand at 962.515 kb on + strand at 962.516 kb on - strand at 962.519 kb on + strand at 962.519 kb on + strand at 962.519 kb on + strand at 962.520 kb on - strand at 962.520 kb on - strand at 962.520 kb on - strand at 962.520 kb on - strand at 962.527 kb on - strand at 962.550 kb on + strand at 962.550 kb on + strand at 962.618 kb on + strand at 962.618 kb on + strand at 962.619 kb on - strand at 962.653 kb on - strand at 962.665 kb on + strand at 962.665 kb on + strand at 962.687 kb on - strand at 962.698 kb on + strand at 962.746 kb on + strand, within Echvi_0842 at 962.764 kb on + strand, within Echvi_0842 at 962.765 kb on - strand, within Echvi_0842 at 962.782 kb on + strand, within Echvi_0842 at 962.783 kb on - strand, within Echvi_0842 at 962.783 kb on - strand, within Echvi_0842 at 962.795 kb on - strand, within Echvi_0842 at 962.839 kb on + strand, within Echvi_0842 at 962.839 kb on + strand, within Echvi_0842 at 962.840 kb on - strand, within Echvi_0842 at 962.840 kb on - strand, within Echvi_0842 at 962.897 kb on + strand, within Echvi_0842 at 962.897 kb on + strand, within Echvi_0842 at 962.898 kb on - strand, within Echvi_0842 at 962.926 kb on + strand, within Echvi_0842 at 962.927 kb on - strand, within Echvi_0842 at 963.000 kb on + strand, within Echvi_0842 at 963.001 kb on - strand, within Echvi_0842 at 963.024 kb on + strand, within Echvi_0842 at 963.024 kb on + strand, within Echvi_0842 at 963.025 kb on - strand, within Echvi_0842 at 963.027 kb on - strand, within Echvi_0842 at 963.088 kb on + strand, within Echvi_0842 at 963.088 kb on + strand, within Echvi_0842 at 963.090 kb on + strand, within Echvi_0842 at 963.091 kb on - strand, within Echvi_0842 at 963.091 kb on - strand, within Echvi_0842 at 963.091 kb on - strand, within Echvi_0842 at 963.091 kb on - strand, within Echvi_0842 at 963.151 kb on - strand, within Echvi_0842 at 963.259 kb on + strand, within Echvi_0842 at 963.259 kb on + strand, within Echvi_0842 at 963.264 kb on + strand, within Echvi_0842 at 963.289 kb on - strand, within Echvi_0842 at 963.291 kb on + strand, within Echvi_0842 at 963.354 kb on - strand, within Echvi_0842 at 963.441 kb on + strand, within Echvi_0842 at 963.442 kb on - strand, within Echvi_0842 at 963.442 kb on - strand, within Echvi_0842 at 963.466 kb on - strand, within Echvi_0842 at 963.509 kb on + strand, within Echvi_0842 at 963.510 kb on - strand, within Echvi_0842 at 963.510 kb on - strand, within Echvi_0842 at 963.528 kb on + strand, within Echvi_0842 at 963.549 kb on + strand, within Echvi_0842 at 963.549 kb on + strand, within Echvi_0842 at 963.550 kb on - strand, within Echvi_0842 at 963.559 kb on + strand, within Echvi_0842 at 963.566 kb on + strand, within Echvi_0842 at 963.567 kb on - strand, within Echvi_0842 at 963.576 kb on + strand, within Echvi_0842 at 963.576 kb on + strand, within Echvi_0842 at 963.576 kb on + strand, within Echvi_0842 at 963.576 kb on + strand, within Echvi_0842 at 963.576 kb on + strand, within Echvi_0842 at 963.576 kb on + strand, within Echvi_0842 at 963.576 kb on + strand, within Echvi_0842 at 963.576 kb on + strand, within Echvi_0842 at 963.576 kb on + strand, within Echvi_0842 at 963.577 kb on - strand, within Echvi_0842 at 963.578 kb on + strand, within Echvi_0842 at 963.589 kb on - strand, within Echvi_0842 at 963.589 kb on - strand, within Echvi_0842 at 963.860 kb on + strand at 963.861 kb on - strand at 963.885 kb on + strand at 963.885 kb on + strand at 963.885 kb on + strand at 963.886 kb on - strand at 964.121 kb on + strand at 964.121 kb on + strand at 964.121 kb on + strand at 964.121 kb on + strand at 964.122 kb on - strand at 964.122 kb on - strand at 964.124 kb on + strand at 964.125 kb on - strand at 964.132 kb on + strand at 964.133 kb on - strand at 964.143 kb on + strand at 964.158 kb on + strand at 964.190 kb on - strand at 964.190 kb on - strand at 964.264 kb on + strand at 964.264 kb on + strand at 964.264 kb on + strand at 964.264 kb on + strand at 964.287 kb on - strand at 964.328 kb on + strand at 964.362 kb on + strand at 964.362 kb on + strand at 964.432 kb on + strand at 964.469 kb on - strand at 964.472 kb on + strand at 964.472 kb on + strand at 964.475 kb on + strand at 964.479 kb on + strand at 964.482 kb on + strand at 964.500 kb on + strand at 964.580 kb on + strand at 964.581 kb on - strand at 964.595 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 962,345 - -1.0 962,365 - +0.4 962,367 + -0.5 962,368 - +0.1 962,368 - +0.1 962,371 - -1.1 962,371 - +0.7 962,371 - -0.5 962,402 + +0.0 962,403 - +0.1 962,403 - +1.9 962,424 + +0.2 962,510 + +1.5 962,515 + -0.2 962,516 - +0.9 962,519 + -0.8 962,519 + -0.8 962,519 + +0.4 962,520 - +0.4 962,520 - +2.3 962,520 - -0.1 962,520 - +0.3 962,527 - -0.7 962,550 + -2.5 962,550 + +0.7 962,618 + +0.6 962,618 + +0.2 962,619 - -1.7 962,653 - +0.5 962,665 + -1.3 962,665 + +0.1 962,687 - -0.3 962,698 + +0.2 962,746 + Echvi_0842 0.12 +0.2 962,764 + Echvi_0842 0.13 -0.9 962,765 - Echvi_0842 0.14 +2.3 962,782 + Echvi_0842 0.15 +1.6 962,783 - Echvi_0842 0.15 +0.9 962,783 - Echvi_0842 0.15 +0.3 962,795 - Echvi_0842 0.16 +0.7 962,839 + Echvi_0842 0.19 -0.1 962,839 + Echvi_0842 0.19 +0.3 962,840 - Echvi_0842 0.19 -1.4 962,840 - Echvi_0842 0.19 +1.2 962,897 + Echvi_0842 0.24 -1.5 962,897 + Echvi_0842 0.24 +0.5 962,898 - Echvi_0842 0.24 -0.6 962,926 + Echvi_0842 0.26 -1.3 962,927 - Echvi_0842 0.26 -0.1 963,000 + Echvi_0842 0.32 -0.5 963,001 - Echvi_0842 0.32 +0.8 963,024 + Echvi_0842 0.33 -1.0 963,024 + Echvi_0842 0.33 +0.7 963,025 - Echvi_0842 0.34 +0.2 963,027 - Echvi_0842 0.34 +0.1 963,088 + Echvi_0842 0.38 -0.9 963,088 + Echvi_0842 0.38 +1.3 963,090 + Echvi_0842 0.39 +0.4 963,091 - Echvi_0842 0.39 +0.1 963,091 - Echvi_0842 0.39 -0.7 963,091 - Echvi_0842 0.39 +0.7 963,091 - Echvi_0842 0.39 -0.1 963,151 - Echvi_0842 0.43 +0.4 963,259 + Echvi_0842 0.52 +0.8 963,259 + Echvi_0842 0.52 -0.1 963,264 + Echvi_0842 0.52 -0.5 963,289 - Echvi_0842 0.54 -0.9 963,291 + Echvi_0842 0.54 +0.4 963,354 - Echvi_0842 0.59 +1.7 963,441 + Echvi_0842 0.66 -0.0 963,442 - Echvi_0842 0.66 -0.9 963,442 - Echvi_0842 0.66 -0.1 963,466 - Echvi_0842 0.68 +0.1 963,509 + Echvi_0842 0.71 -0.7 963,510 - Echvi_0842 0.71 +0.5 963,510 - Echvi_0842 0.71 -0.8 963,528 + Echvi_0842 0.72 +0.3 963,549 + Echvi_0842 0.74 -0.1 963,549 + Echvi_0842 0.74 +1.3 963,550 - Echvi_0842 0.74 -2.1 963,559 + Echvi_0842 0.75 +0.8 963,566 + Echvi_0842 0.75 +1.5 963,567 - Echvi_0842 0.75 +1.6 963,576 + Echvi_0842 0.76 -0.9 963,576 + Echvi_0842 0.76 +0.3 963,576 + Echvi_0842 0.76 +0.4 963,576 + Echvi_0842 0.76 +0.8 963,576 + Echvi_0842 0.76 -0.2 963,576 + Echvi_0842 0.76 -0.2 963,576 + Echvi_0842 0.76 +0.6 963,576 + Echvi_0842 0.76 +2.9 963,576 + Echvi_0842 0.76 +0.7 963,577 - Echvi_0842 0.76 -0.3 963,578 + Echvi_0842 0.76 +0.3 963,589 - Echvi_0842 0.77 +0.6 963,589 - Echvi_0842 0.77 +1.2 963,860 + +0.1 963,861 - +0.9 963,885 + -0.9 963,885 + +0.5 963,885 + -1.2 963,886 - +0.0 964,121 + +0.1 964,121 + +0.9 964,121 + +0.9 964,121 + +0.6 964,122 - -0.2 964,122 - +0.4 964,124 + -0.5 964,125 - -1.3 964,132 + +0.7 964,133 - +0.1 964,143 + +0.5 964,158 + -0.5 964,190 - -0.4 964,190 - -0.8 964,264 + +0.8 964,264 + -0.6 964,264 + -0.1 964,264 + +2.6 964,287 - +0.1 964,328 + -0.0 964,362 + +0.1 964,362 + +0.2 964,432 + +0.5 964,469 - +0.8 964,472 + +0.7 964,472 + -0.4 964,475 + -0.5 964,479 + +2.1 964,482 + +0.5 964,500 + -0.5 964,580 + -0.1 964,581 - -0.4 964,595 + -0.0
Or see this region's nucleotide sequence