Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0736

Experiment: D-Glucosamine Hydrochloride (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0735 and Echvi_0736 overlap by 20 nucleotidesEchvi_0736 and Echvi_0737 are separated by 908 nucleotides Echvi_0735: Echvi_0735 - Neutral/alkaline non-lysosomal ceramidase., at 823,655 to 824,980 _0735 Echvi_0736: Echvi_0736 - hypothetical protein, at 824,961 to 825,338 _0736 Echvi_0737: Echvi_0737 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 826,247 to 826,879 _0737 Position (kb) 824 825 826Strain fitness (log2 ratio) -2 -1 0 1 2 3at 825.034 kb on + strand, within Echvi_0736at 825.045 kb on + strand, within Echvi_0736at 825.065 kb on + strand, within Echvi_0736at 825.065 kb on + strand, within Echvi_0736at 825.065 kb on + strand, within Echvi_0736at 825.065 kb on + strand, within Echvi_0736at 825.065 kb on + strand, within Echvi_0736at 825.065 kb on + strand, within Echvi_0736at 825.066 kb on - strand, within Echvi_0736at 825.067 kb on + strand, within Echvi_0736at 825.068 kb on - strand, within Echvi_0736at 825.140 kb on - strand, within Echvi_0736at 825.197 kb on + strand, within Echvi_0736at 825.197 kb on + strand, within Echvi_0736at 825.209 kb on + strand, within Echvi_0736at 825.209 kb on + strand, within Echvi_0736at 825.212 kb on + strand, within Echvi_0736at 825.213 kb on - strand, within Echvi_0736at 825.213 kb on - strand, within Echvi_0736at 825.222 kb on + strand, within Echvi_0736at 825.222 kb on + strand, within Echvi_0736at 825.343 kb on + strandat 825.344 kb on - strandat 825.344 kb on - strandat 825.347 kb on + strandat 825.351 kb on + strandat 825.385 kb on + strandat 825.386 kb on - strandat 825.395 kb on + strandat 825.395 kb on + strandat 825.395 kb on + strandat 825.395 kb on + strandat 825.396 kb on - strandat 825.398 kb on + strandat 825.398 kb on + strandat 825.399 kb on - strandat 825.442 kb on + strandat 825.497 kb on + strandat 825.498 kb on - strandat 825.498 kb on - strandat 825.568 kb on + strandat 825.569 kb on - strandat 825.569 kb on - strandat 825.574 kb on + strandat 825.574 kb on + strandat 825.585 kb on - strandat 825.594 kb on - strandat 825.594 kb on - strandat 825.703 kb on + strandat 825.728 kb on - strandat 825.728 kb on - strandat 825.748 kb on - strandat 825.808 kb on + strandat 825.808 kb on + strandat 825.808 kb on + strandat 825.810 kb on + strandat 825.810 kb on + strandat 825.846 kb on + strandat 825.846 kb on + strandat 825.847 kb on - strandat 825.848 kb on + strandat 825.848 kb on + strandat 825.849 kb on - strandat 825.902 kb on - strandat 825.902 kb on - strandat 825.902 kb on - strandat 825.973 kb on + strandat 825.973 kb on + strandat 825.975 kb on + strandat 825.975 kb on + strandat 825.985 kb on + strandat 825.985 kb on + strandat 825.985 kb on + strandat 826.019 kb on + strandat 826.047 kb on + strandat 826.048 kb on - strandat 826.052 kb on + strandat 826.184 kb on + strandat 826.184 kb on + strandat 826.185 kb on - strandat 826.185 kb on - strandat 826.185 kb on - strandat 826.185 kb on - strandat 826.233 kb on + strandat 826.272 kb on - strandat 826.301 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
remove
825,034 + Echvi_0736 0.19 -1.1
825,045 + Echvi_0736 0.22 -0.2
825,065 + Echvi_0736 0.28 +0.2
825,065 + Echvi_0736 0.28 +0.1
825,065 + Echvi_0736 0.28 -0.6
825,065 + Echvi_0736 0.28 -0.3
825,065 + Echvi_0736 0.28 -0.5
825,065 + Echvi_0736 0.28 -0.2
825,066 - Echvi_0736 0.28 +0.3
825,067 + Echvi_0736 0.28 +0.3
825,068 - Echvi_0736 0.28 +0.5
825,140 - Echvi_0736 0.47 -1.0
825,197 + Echvi_0736 0.62 -0.3
825,197 + Echvi_0736 0.62 -0.9
825,209 + Echvi_0736 0.66 +0.2
825,209 + Echvi_0736 0.66 +0.3
825,212 + Echvi_0736 0.66 -0.7
825,213 - Echvi_0736 0.67 -1.0
825,213 - Echvi_0736 0.67 -2.0
825,222 + Echvi_0736 0.69 -2.4
825,222 + Echvi_0736 0.69 -0.7
825,343 + +0.7
825,344 - +0.3
825,344 - +0.3
825,347 + +0.2
825,351 + -0.1
825,385 + +0.1
825,386 - +2.3
825,395 + -0.2
825,395 + +0.2
825,395 + -0.2
825,395 + +0.4
825,396 - +0.3
825,398 + -1.1
825,398 + -0.5
825,399 - -0.6
825,442 + +0.8
825,497 + -0.4
825,498 - +0.3
825,498 - -0.2
825,568 + +2.8
825,569 - -0.6
825,569 - -1.0
825,574 + -0.5
825,574 + +0.1
825,585 - +0.7
825,594 - +0.0
825,594 - +0.1
825,703 + +0.4
825,728 - +1.8
825,728 - -0.7
825,748 - +0.2
825,808 + -0.1
825,808 + +0.1
825,808 + +1.0
825,810 + +0.4
825,810 + -0.3
825,846 + +3.4
825,846 + -1.3
825,847 - +0.9
825,848 + -0.4
825,848 + -1.2
825,849 - +0.4
825,902 - +0.4
825,902 - +0.3
825,902 - -0.2
825,973 + -1.2
825,973 + +1.8
825,975 + +0.1
825,975 + -0.6
825,985 + +1.3
825,985 + +0.4
825,985 + -0.6
826,019 + +0.7
826,047 + +0.6
826,048 - +1.3
826,052 + -1.5
826,184 + +0.4
826,184 + -0.7
826,185 - +0.2
826,185 - +0.0
826,185 - -0.3
826,185 - +1.5
826,233 + -1.0
826,272 - -1.0
826,301 + -0.2

Or see this region's nucleotide sequence