Experiment: Rhamnogalacturonan - from potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5464 and Atu5465 are separated by 3 nucleotides Atu5465 and Atu5466 are separated by 55 nucleotides Atu5466 and Atu5467 are separated by 255 nucleotides Atu5467 and Atu5468 overlap by 21 nucleotides Atu5468 and Atu5469 are separated by 89 nucleotides
Atu5464: Atu5464 - IclR family transcriptional regulator, at 456,691 to 458,373
Atu5464
Atu5465: Atu5465 - 3-oxoacyl-ACP reductase, at 458,377 to 459,138
Atu5465
Atu5466: Atu5466 - potassium uptake protein, at 459,194 to 461,107
Atu5466
Atu5467: Atu5467 - hypothetical protein, at 461,363 to 461,674
Atu5467
Atu5468: Atu5468 - hypothetical protein, at 461,654 to 461,851
Atu5468
Atu5469: Atu5469 - DNA polymerase IV, at 461,941 to 463,014
Atu5469
Position (kb) 459
460
461
462 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 458.224 kb on - strand at 458.250 kb on + strand at 458.282 kb on + strand at 458.282 kb on + strand at 458.369 kb on - strand at 458.436 kb on - strand at 458.436 kb on - strand at 458.499 kb on - strand, within Atu5465 at 458.501 kb on + strand, within Atu5465 at 458.501 kb on + strand, within Atu5465 at 458.501 kb on + strand, within Atu5465 at 458.501 kb on + strand, within Atu5465 at 458.509 kb on - strand, within Atu5465 at 458.509 kb on - strand, within Atu5465 at 458.558 kb on - strand, within Atu5465 at 458.558 kb on - strand, within Atu5465 at 458.606 kb on + strand, within Atu5465 at 458.606 kb on + strand, within Atu5465 at 458.608 kb on - strand, within Atu5465 at 458.670 kb on + strand, within Atu5465 at 458.678 kb on - strand, within Atu5465 at 458.741 kb on - strand, within Atu5465 at 458.741 kb on - strand, within Atu5465 at 458.793 kb on - strand, within Atu5465 at 458.799 kb on + strand, within Atu5465 at 458.823 kb on + strand, within Atu5465 at 458.831 kb on - strand, within Atu5465 at 458.925 kb on + strand, within Atu5465 at 458.925 kb on + strand, within Atu5465 at 458.933 kb on - strand, within Atu5465 at 458.949 kb on + strand, within Atu5465 at 458.954 kb on + strand, within Atu5465 at 458.969 kb on - strand, within Atu5465 at 459.004 kb on - strand, within Atu5465 at 459.067 kb on + strand at 459.075 kb on - strand at 459.095 kb on + strand at 459.206 kb on - strand at 459.253 kb on - strand at 459.295 kb on - strand at 459.346 kb on + strand at 459.511 kb on - strand, within Atu5466 at 459.524 kb on - strand, within Atu5466 at 459.527 kb on + strand, within Atu5466 at 459.572 kb on + strand, within Atu5466 at 459.574 kb on + strand, within Atu5466 at 459.605 kb on - strand, within Atu5466 at 459.739 kb on + strand, within Atu5466 at 459.747 kb on - strand, within Atu5466 at 459.764 kb on - strand, within Atu5466 at 459.954 kb on - strand, within Atu5466 at 459.967 kb on - strand, within Atu5466 at 459.998 kb on - strand, within Atu5466 at 460.038 kb on + strand, within Atu5466 at 460.038 kb on + strand, within Atu5466 at 460.046 kb on - strand, within Atu5466 at 460.048 kb on - strand, within Atu5466 at 460.056 kb on - strand, within Atu5466 at 460.083 kb on + strand, within Atu5466 at 460.083 kb on + strand, within Atu5466 at 460.083 kb on + strand, within Atu5466 at 460.083 kb on + strand, within Atu5466 at 460.083 kb on + strand, within Atu5466 at 460.091 kb on - strand, within Atu5466 at 460.091 kb on - strand, within Atu5466 at 460.091 kb on - strand, within Atu5466 at 460.130 kb on + strand, within Atu5466 at 460.234 kb on + strand, within Atu5466 at 460.234 kb on + strand, within Atu5466 at 460.239 kb on + strand, within Atu5466 at 460.365 kb on + strand, within Atu5466 at 460.433 kb on - strand, within Atu5466 at 460.449 kb on - strand, within Atu5466 at 460.476 kb on + strand, within Atu5466 at 460.602 kb on + strand, within Atu5466 at 460.610 kb on - strand, within Atu5466 at 460.634 kb on + strand, within Atu5466 at 460.637 kb on - strand, within Atu5466 at 460.646 kb on + strand, within Atu5466 at 460.684 kb on + strand, within Atu5466 at 460.702 kb on - strand, within Atu5466 at 460.834 kb on - strand, within Atu5466 at 460.839 kb on - strand, within Atu5466 at 460.943 kb on + strand at 460.948 kb on - strand at 461.021 kb on + strand at 461.073 kb on - strand at 461.086 kb on - strand at 461.103 kb on + strand at 461.159 kb on + strand at 461.239 kb on - strand at 461.264 kb on + strand at 461.267 kb on + strand at 461.285 kb on - strand at 461.300 kb on - strand at 461.428 kb on + strand, within Atu5467 at 461.435 kb on + strand, within Atu5467 at 461.453 kb on - strand, within Atu5467 at 461.493 kb on - strand, within Atu5467 at 461.544 kb on - strand, within Atu5467 at 461.634 kb on + strand, within Atu5467 at 461.671 kb on - strand at 461.736 kb on - strand, within Atu5468 at 461.736 kb on - strand, within Atu5468 at 461.780 kb on + strand, within Atu5468 at 461.851 kb on + strand at 461.933 kb on + strand at 461.963 kb on + strand at 462.002 kb on + strand at 462.010 kb on - strand at 462.072 kb on + strand, within Atu5469
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato (C) remove 458,224 - +0.8 458,250 + -0.8 458,282 + +2.4 458,282 + -0.1 458,369 - +0.6 458,436 - -0.4 458,436 - +1.2 458,499 - Atu5465 0.16 -0.5 458,501 + Atu5465 0.16 +1.8 458,501 + Atu5465 0.16 -2.1 458,501 + Atu5465 0.16 +0.4 458,501 + Atu5465 0.16 +0.8 458,509 - Atu5465 0.17 +0.1 458,509 - Atu5465 0.17 +0.4 458,558 - Atu5465 0.24 +0.3 458,558 - Atu5465 0.24 +0.1 458,606 + Atu5465 0.30 -0.5 458,606 + Atu5465 0.30 -0.6 458,608 - Atu5465 0.30 -0.3 458,670 + Atu5465 0.38 +1.8 458,678 - Atu5465 0.40 +0.1 458,741 - Atu5465 0.48 -0.4 458,741 - Atu5465 0.48 -0.0 458,793 - Atu5465 0.55 +0.2 458,799 + Atu5465 0.55 +0.0 458,823 + Atu5465 0.59 +0.8 458,831 - Atu5465 0.60 -1.9 458,925 + Atu5465 0.72 +0.0 458,925 + Atu5465 0.72 +0.5 458,933 - Atu5465 0.73 +0.8 458,949 + Atu5465 0.75 +0.0 458,954 + Atu5465 0.76 +0.4 458,969 - Atu5465 0.78 +0.7 459,004 - Atu5465 0.82 -1.2 459,067 + +0.8 459,075 - -0.6 459,095 + +0.7 459,206 - +0.7 459,253 - -0.4 459,295 - -0.8 459,346 + -1.5 459,511 - Atu5466 0.17 -1.0 459,524 - Atu5466 0.17 +0.2 459,527 + Atu5466 0.17 +0.4 459,572 + Atu5466 0.20 +0.1 459,574 + Atu5466 0.20 -2.4 459,605 - Atu5466 0.21 +1.9 459,739 + Atu5466 0.28 -2.3 459,747 - Atu5466 0.29 +0.1 459,764 - Atu5466 0.30 +0.4 459,954 - Atu5466 0.40 +0.5 459,967 - Atu5466 0.40 +0.2 459,998 - Atu5466 0.42 +0.8 460,038 + Atu5466 0.44 -0.9 460,038 + Atu5466 0.44 -3.0 460,046 - Atu5466 0.45 +0.7 460,048 - Atu5466 0.45 -1.3 460,056 - Atu5466 0.45 -0.6 460,083 + Atu5466 0.46 +1.4 460,083 + Atu5466 0.46 -1.8 460,083 + Atu5466 0.46 +0.1 460,083 + Atu5466 0.46 -1.8 460,083 + Atu5466 0.46 +0.8 460,091 - Atu5466 0.47 +0.4 460,091 - Atu5466 0.47 +0.6 460,091 - Atu5466 0.47 -0.1 460,130 + Atu5466 0.49 +0.1 460,234 + Atu5466 0.54 -1.4 460,234 + Atu5466 0.54 +0.0 460,239 + Atu5466 0.55 +0.4 460,365 + Atu5466 0.61 +0.5 460,433 - Atu5466 0.65 +0.2 460,449 - Atu5466 0.66 -2.5 460,476 + Atu5466 0.67 -0.0 460,602 + Atu5466 0.74 +0.9 460,610 - Atu5466 0.74 -0.1 460,634 + Atu5466 0.75 +0.4 460,637 - Atu5466 0.75 +1.1 460,646 + Atu5466 0.76 -0.4 460,684 + Atu5466 0.78 +0.8 460,702 - Atu5466 0.79 -0.4 460,834 - Atu5466 0.86 -0.4 460,839 - Atu5466 0.86 -0.1 460,943 + -1.1 460,948 - -0.4 461,021 + -1.7 461,073 - +0.5 461,086 - +2.4 461,103 + +0.9 461,159 + -2.5 461,239 - +0.9 461,264 + -0.2 461,267 + -1.5 461,285 - -0.9 461,300 - +2.0 461,428 + Atu5467 0.21 -0.2 461,435 + Atu5467 0.23 +0.4 461,453 - Atu5467 0.29 +0.7 461,493 - Atu5467 0.42 +0.8 461,544 - Atu5467 0.58 +0.6 461,634 + Atu5467 0.87 +2.9 461,671 - +0.7 461,736 - Atu5468 0.41 -0.8 461,736 - Atu5468 0.41 -0.9 461,780 + Atu5468 0.64 +2.0 461,851 + +0.4 461,933 + +0.5 461,963 + -1.2 462,002 + -0.5 462,010 - +1.7 462,072 + Atu5469 0.12 -2.1
Or see this region's nucleotide sequence