Experiment: Rhamnogalacturonan - from potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3381 and Atu3382 are separated by 208 nucleotides Atu3382 and Atu3383 overlap by 14 nucleotides
Atu3381: Atu3381 - LysR family transcriptional regulator, at 422,507 to 423,412
Atu3381
Atu3382: Atu3382 - HlyD family secretion protein, at 423,621 to 424,934
Atu3382
Atu3383: Atu3383 - rhizobicin secretion, at 424,921 to 426,768
Atu3383
Position (kb) 423
424
425 Strain fitness (log2 ratio) -2
-1
0
1 at 422.703 kb on - strand, within Atu3381 at 422.716 kb on - strand, within Atu3381 at 422.874 kb on - strand, within Atu3381 at 423.003 kb on + strand, within Atu3381 at 423.016 kb on - strand, within Atu3381 at 423.256 kb on - strand, within Atu3381 at 423.274 kb on - strand, within Atu3381 at 423.299 kb on - strand, within Atu3381 at 423.398 kb on - strand at 423.476 kb on + strand at 423.537 kb on - strand at 423.591 kb on - strand at 423.643 kb on - strand at 423.670 kb on + strand at 423.670 kb on + strand at 423.683 kb on - strand at 423.688 kb on - strand at 423.708 kb on + strand at 423.795 kb on + strand, within Atu3382 at 423.865 kb on - strand, within Atu3382 at 423.883 kb on - strand, within Atu3382 at 423.896 kb on + strand, within Atu3382 at 423.913 kb on + strand, within Atu3382 at 423.932 kb on - strand, within Atu3382 at 423.984 kb on - strand, within Atu3382 at 424.102 kb on + strand, within Atu3382 at 424.127 kb on + strand, within Atu3382 at 424.148 kb on + strand, within Atu3382 at 424.165 kb on + strand, within Atu3382 at 424.261 kb on + strand, within Atu3382 at 424.293 kb on + strand, within Atu3382 at 424.471 kb on + strand, within Atu3382 at 424.543 kb on + strand, within Atu3382 at 424.588 kb on + strand, within Atu3382 at 424.656 kb on + strand, within Atu3382 at 424.656 kb on + strand, within Atu3382 at 424.656 kb on + strand, within Atu3382 at 424.664 kb on - strand, within Atu3382 at 424.770 kb on + strand, within Atu3382 at 424.919 kb on + strand at 424.970 kb on + strand at 425.034 kb on - strand at 425.090 kb on - strand at 425.091 kb on + strand at 425.114 kb on + strand, within Atu3383 at 425.233 kb on - strand, within Atu3383 at 425.233 kb on - strand, within Atu3383 at 425.283 kb on - strand, within Atu3383 at 425.299 kb on + strand, within Atu3383 at 425.331 kb on + strand, within Atu3383 at 425.514 kb on - strand, within Atu3383 at 425.658 kb on - strand, within Atu3383 at 425.663 kb on + strand, within Atu3383 at 425.837 kb on + strand, within Atu3383 at 425.837 kb on + strand, within Atu3383 at 425.850 kb on - strand, within Atu3383
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato (C) remove 422,703 - Atu3381 0.22 +0.4 422,716 - Atu3381 0.23 +0.2 422,874 - Atu3381 0.41 -1.9 423,003 + Atu3381 0.55 +0.0 423,016 - Atu3381 0.56 -0.0 423,256 - Atu3381 0.83 -0.3 423,274 - Atu3381 0.85 -1.0 423,299 - Atu3381 0.87 +0.9 423,398 - -1.4 423,476 + +1.3 423,537 - +1.2 423,591 - -0.0 423,643 - +0.7 423,670 + -0.8 423,670 + +0.8 423,683 - +1.4 423,688 - -0.4 423,708 + +0.3 423,795 + Atu3382 0.13 +0.5 423,865 - Atu3382 0.19 +0.0 423,883 - Atu3382 0.20 -1.1 423,896 + Atu3382 0.21 +0.0 423,913 + Atu3382 0.22 +1.6 423,932 - Atu3382 0.24 +0.6 423,984 - Atu3382 0.28 +0.1 424,102 + Atu3382 0.37 +1.0 424,127 + Atu3382 0.39 +1.5 424,148 + Atu3382 0.40 +0.4 424,165 + Atu3382 0.41 +0.3 424,261 + Atu3382 0.49 -0.1 424,293 + Atu3382 0.51 +0.4 424,471 + Atu3382 0.65 +1.2 424,543 + Atu3382 0.70 +0.3 424,588 + Atu3382 0.74 -0.3 424,656 + Atu3382 0.79 +0.1 424,656 + Atu3382 0.79 +0.3 424,656 + Atu3382 0.79 +0.8 424,664 - Atu3382 0.79 +0.8 424,770 + Atu3382 0.87 -0.3 424,919 + +0.9 424,970 + -1.8 425,034 - +1.5 425,090 - +0.6 425,091 + -1.8 425,114 + Atu3383 0.10 -0.1 425,233 - Atu3383 0.17 +0.1 425,233 - Atu3383 0.17 -1.7 425,283 - Atu3383 0.20 +0.2 425,299 + Atu3383 0.20 -0.2 425,331 + Atu3383 0.22 +0.2 425,514 - Atu3383 0.32 +1.6 425,658 - Atu3383 0.40 +1.1 425,663 + Atu3383 0.40 -1.4 425,837 + Atu3383 0.50 +0.8 425,837 + Atu3383 0.50 -0.2 425,850 - Atu3383 0.50 +0.5
Or see this region's nucleotide sequence