Experiment: Rhamnogalacturonan - from potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0769 and Atu8013 overlap by 1 nucleotides Atu8013 and Atu0770 are separated by 28 nucleotides Atu0770 and Atu0771 are separated by 61 nucleotides
Atu0769: Atu0769 - protoheme IX farnesyltransferase, at 765,616 to 766,569
Atu0769
Atu8013: Atu8013 - hypothetical protein, at 766,569 to 766,700
Atu8013
Atu0770: Atu0770 - cytochrome C oxidase assembly protein, at 766,729 to 767,346
Atu0770
Atu0771: Atu0771 - cytochrome c oxidase subunit III, at 767,408 to 768,283
Atu0771
Position (kb) 766
767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 765.773 kb on + strand, within Atu0769 at 766.356 kb on - strand, within Atu0769 at 766.392 kb on - strand, within Atu0769 at 766.425 kb on + strand, within Atu0769 at 766.537 kb on + strand at 766.629 kb on - strand, within Atu8013 at 766.715 kb on - strand at 766.715 kb on - strand at 766.720 kb on + strand at 766.720 kb on + strand at 766.782 kb on + strand at 766.854 kb on - strand, within Atu0770 at 766.996 kb on + strand, within Atu0770 at 767.030 kb on + strand, within Atu0770 at 767.042 kb on + strand, within Atu0770 at 767.099 kb on - strand, within Atu0770 at 767.252 kb on + strand, within Atu0770 at 767.252 kb on + strand, within Atu0770 at 767.252 kb on + strand, within Atu0770 at 767.260 kb on - strand, within Atu0770 at 767.262 kb on + strand, within Atu0770 at 767.270 kb on - strand, within Atu0770 at 767.468 kb on + strand at 767.561 kb on + strand, within Atu0771 at 767.589 kb on - strand, within Atu0771 at 767.668 kb on - strand, within Atu0771 at 767.751 kb on - strand, within Atu0771 at 767.877 kb on - strand, within Atu0771 at 767.877 kb on - strand, within Atu0771 at 767.904 kb on + strand, within Atu0771 at 767.910 kb on + strand, within Atu0771 at 767.973 kb on - strand, within Atu0771 at 767.973 kb on - strand, within Atu0771 at 767.974 kb on - strand, within Atu0771 at 768.029 kb on + strand, within Atu0771 at 768.121 kb on - strand, within Atu0771 at 768.195 kb on + strand, within Atu0771 at 768.300 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato (C) remove 765,773 + Atu0769 0.16 -2.9 766,356 - Atu0769 0.78 -1.8 766,392 - Atu0769 0.81 -2.0 766,425 + Atu0769 0.85 -2.2 766,537 + +0.4 766,629 - Atu8013 0.45 -1.7 766,715 - -0.7 766,715 - +0.2 766,720 + -0.9 766,720 + -1.1 766,782 + -0.1 766,854 - Atu0770 0.20 +0.5 766,996 + Atu0770 0.43 -0.5 767,030 + Atu0770 0.49 -0.7 767,042 + Atu0770 0.51 +0.2 767,099 - Atu0770 0.60 +0.6 767,252 + Atu0770 0.85 +0.9 767,252 + Atu0770 0.85 -1.5 767,252 + Atu0770 0.85 +0.1 767,260 - Atu0770 0.86 -1.5 767,262 + Atu0770 0.86 -0.0 767,270 - Atu0770 0.88 +0.5 767,468 + +0.3 767,561 + Atu0771 0.17 -0.5 767,589 - Atu0771 0.21 -0.1 767,668 - Atu0771 0.30 -1.4 767,751 - Atu0771 0.39 -0.6 767,877 - Atu0771 0.54 -0.3 767,877 - Atu0771 0.54 -0.1 767,904 + Atu0771 0.57 +0.3 767,910 + Atu0771 0.57 +0.6 767,973 - Atu0771 0.64 -1.3 767,973 - Atu0771 0.64 -0.5 767,974 - Atu0771 0.65 -2.9 768,029 + Atu0771 0.71 +2.3 768,121 - Atu0771 0.81 -2.0 768,195 + Atu0771 0.90 +0.1 768,300 - +1.0
Or see this region's nucleotide sequence