Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4865

Experiment: apoplastic, chopping recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, chopping recovery; Green bean
5,772,770	+		Psyr_4864	0.29	+0.5
5,772,876	+		Psyr_4864	0.39	+1.9
5,772,881	+		Psyr_4864	0.39	-1.5
5,772,881	+		Psyr_4864	0.39	+2.4
5,772,882	-		Psyr_4864	0.39	+0.7
5,772,882	-		Psyr_4864	0.39	-0.1
5,772,882	-		Psyr_4864	0.39	+2.1
5,772,899	+		Psyr_4864	0.41	+2.6
5,772,908	+		Psyr_4864	0.41	-2.2
5,772,947	+		Psyr_4864	0.45	+0.1
5,772,947	+		Psyr_4864	0.45	+0.0
5,772,948	-		Psyr_4864	0.45	+0.8
5,772,986	+		Psyr_4864	0.49	-1.0
5,772,986	+		Psyr_4864	0.49	+1.3
5,772,986	+		Psyr_4864	0.49	-2.2
5,772,986	+		Psyr_4864	0.49	+1.1
5,772,986	+		Psyr_4864	0.49	-1.7
5,772,987	-		Psyr_4864	0.49	+0.6
5,772,987	-		Psyr_4864	0.49	+2.6
5,772,987	-		Psyr_4864	0.49	-2.2
5,772,987	-		Psyr_4864	0.49	+2.1
5,772,987	-		Psyr_4864	0.49	+0.1
5,772,987	-		Psyr_4864	0.49	+2.5
5,772,987	-		Psyr_4864	0.49	+1.5
5,773,175	+		Psyr_4864	0.66	-0.9
5,773,235	+		Psyr_4864	0.71	-0.1
5,773,235	+		Psyr_4864	0.71	+2.0
5,773,235	+		Psyr_4864	0.71	+0.7
5,773,235	+		Psyr_4864	0.71	+1.0
5,773,385	+		Psyr_4864	0.85	+0.0
5,773,385	+		Psyr_4864	0.85	+1.3
5,773,385	+		Psyr_4864	0.85	-1.7
5,773,385	+		Psyr_4864	0.85	-1.9
5,773,385	+		Psyr_4864	0.85	-1.2
5,773,385	+		Psyr_4864	0.85	-0.5
5,773,385	+		Psyr_4864	0.85	-1.7
5,773,386	-		Psyr_4864	0.85	+0.2
5,773,386	-		Psyr_4864	0.85	+0.3
5,773,442	+				-4.0
5,773,442	+				-1.7
5,773,442	+				-2.8
5,773,442	+				-0.4
5,773,442	+				-1.6
5,773,443	-				-3.0
5,773,443	-				+0.6
5,773,443	-				-0.5
5,773,443	-				+1.9
5,773,443	-				-1.2
5,773,455	+				+1.5
5,773,455	+				-0.5
5,773,455	+				+1.5
5,773,456	-				+1.1
5,773,456	-				+1.5
5,773,457	+				-2.5
5,773,457	+				-2.9
5,773,457	+				+1.2
5,773,457	+				-2.2
5,773,457	+				+0.6
5,773,457	+				+1.1
5,773,457	+				-2.6
5,773,457	+				+2.1
5,773,458	-				+0.9
5,773,458	-				+1.0
5,773,458	-				-1.8
5,773,458	-				-1.2
5,773,458	-				+1.5
5,773,458	-				-2.0
5,773,458	-				-3.2
5,773,458	-				+1.9
5,773,458	-				-2.5
5,773,458	-				+1.0
5,773,458	-				+0.5
5,773,458	-				-0.6
5,773,461	+				+1.4
5,773,461	+				+0.4
5,773,461	+				-2.2
5,773,461	+				-0.2
5,773,461	+				-1.6
5,773,461	+				-0.2
5,773,461	+				-0.2
5,773,461	+				+1.0
5,773,462	-				-0.7
5,773,462	-				-0.1
5,773,462	-				-1.2
5,773,462	-				+1.1
5,773,462	-				-2.2
5,773,462	-				+0.6
5,773,462	-				+0.8
5,773,536	+				-0.4
5,773,542	+				+2.1
5,773,542	+				-2.5
5,773,543	-				-2.9
5,773,543	-				-1.6
5,773,564	-				+1.6
5,773,620	-				-2.7
5,773,626	+				-1.2
5,773,627	-				-0.9
5,773,627	-				+1.0
5,773,650	-				-2.2
5,773,657	-				-2.9
5,773,691	-				+0.3
5,773,721	+				+0.9
5,773,721	+				-0.0
5,773,722	-				+1.8
5,773,722	-				-1.9
5,773,722	-				+0.8
5,773,722	-				-0.2
5,773,722	-				-2.3
5,773,734	+				-0.9
5,773,734	+				+0.3
5,773,734	+				+0.8
5,773,734	+				-0.5
5,773,734	+				-0.4
5,773,735	-				+0.1
5,773,735	-				-3.1
5,773,735	-				+0.4
5,773,735	-				+2.1
5,773,797	-				+0.8
5,773,955	+		Psyr_4865	0.21	-2.6
5,773,955	+		Psyr_4865	0.21	+1.8
5,773,956	-		Psyr_4865	0.21	-1.9
5,773,956	-		Psyr_4865	0.21	-0.1
5,774,003	+		Psyr_4865	0.26	+0.8
5,774,003	+		Psyr_4865	0.26	+2.5
5,774,003	+		Psyr_4865	0.26	+0.9
5,774,003	+		Psyr_4865	0.26	-1.9
5,774,003	+		Psyr_4865	0.26	+0.5
5,774,003	+		Psyr_4865	0.26	+0.2
5,774,004	-		Psyr_4865	0.26	-0.7
5,774,004	-		Psyr_4865	0.26	-4.1
5,774,004	-		Psyr_4865	0.26	-1.7
5,774,004	-		Psyr_4865	0.26	-0.3
5,774,004	-		Psyr_4865	0.26	+2.4
5,774,004	-		Psyr_4865	0.26	+1.7
5,774,037	-		Psyr_4865	0.29	+0.4
5,774,037	-		Psyr_4865	0.29	+0.7
5,774,037	-		Psyr_4865	0.29	-0.7
5,774,037	-		Psyr_4865	0.29	+1.0
5,774,037	-		Psyr_4865	0.29	-1.4
5,774,037	-		Psyr_4865	0.29	-2.0
5,774,087	+		Psyr_4865	0.33	+2.9
5,774,087	+		Psyr_4865	0.33	+0.8
5,774,087	+		Psyr_4865	0.33	-1.6
5,774,087	+		Psyr_4865	0.33	+0.6
5,774,087	+		Psyr_4865	0.33	-0.2
5,774,087	+		Psyr_4865	0.33	-1.4
5,774,088	-		Psyr_4865	0.34	+1.8
5,774,088	-		Psyr_4865	0.34	+1.1
5,774,088	-		Psyr_4865	0.34	+2.5
5,774,088	-		Psyr_4865	0.34	-1.7
5,774,088	-		Psyr_4865	0.34	-1.3
5,774,088	-		Psyr_4865	0.34	+1.5
5,774,091	+		Psyr_4865	0.34	-1.3
5,774,091	+		Psyr_4865	0.34	-1.9
5,774,091	+		Psyr_4865	0.34	+0.1
5,774,091	+		Psyr_4865	0.34	+1.3
5,774,092	-		Psyr_4865	0.34	+0.3
5,774,147	+		Psyr_4865	0.39	-0.8
5,774,147	+		Psyr_4865	0.39	+1.9
5,774,147	+		Psyr_4865	0.39	+2.7
5,774,147	+		Psyr_4865	0.39	+4.1
5,774,147	+		Psyr_4865	0.39	-0.0
5,774,148	-		Psyr_4865	0.39	-1.7
5,774,148	-		Psyr_4865	0.39	+1.9
5,774,148	-		Psyr_4865	0.39	+1.6
5,774,148	-		Psyr_4865	0.39	+0.8
5,774,148	-		Psyr_4865	0.39	+1.5
5,774,148	-		Psyr_4865	0.39	+1.3
5,774,166	-		Psyr_4865	0.41	-1.1
5,774,253	-		Psyr_4865	0.49	+0.4
5,774,253	-		Psyr_4865	0.49	+0.5
5,774,314	+		Psyr_4865	0.54	+1.5
5,774,314	+		Psyr_4865	0.54	-0.5
5,774,314	+		Psyr_4865	0.54	-0.9
5,774,314	+		Psyr_4865	0.54	+1.5
5,774,430	+		Psyr_4865	0.65	+0.3
5,774,430	+		Psyr_4865	0.65	+1.9
5,774,430	+		Psyr_4865	0.65	+1.7
5,774,430	+		Psyr_4865	0.65	-1.0
5,774,430	+		Psyr_4865	0.65	+0.7
5,774,430	+		Psyr_4865	0.65	-2.6
5,774,430	+		Psyr_4865	0.65	-4.1
5,774,430	+		Psyr_4865	0.65	-3.6
5,774,430	+		Psyr_4865	0.65	-1.2
5,774,430	+		Psyr_4865	0.65	+1.5
5,774,430	+		Psyr_4865	0.65	-1.4
5,774,430	+		Psyr_4865	0.65	-0.8
5,774,430	+		Psyr_4865	0.65	-1.0
5,774,430	+		Psyr_4865	0.65	-1.2
5,774,430	+		Psyr_4865	0.65	-0.8
5,774,431	-		Psyr_4865	0.65	-0.3
5,774,431	-		Psyr_4865	0.65	-1.0
5,774,431	-		Psyr_4865	0.65	+0.7
5,774,431	-		Psyr_4865	0.65	+0.5
5,774,431	-		Psyr_4865	0.65	+1.1
5,774,431	-		Psyr_4865	0.65	+1.7
5,774,431	-		Psyr_4865	0.65	+0.5
5,774,431	-		Psyr_4865	0.65	+0.2
5,774,431	-		Psyr_4865	0.65	-1.7
5,774,432	+		Psyr_4865	0.65	+0.9
5,774,432	+		Psyr_4865	0.65	+0.2
5,774,432	+		Psyr_4865	0.65	-0.5
5,774,433	-		Psyr_4865	0.65	-1.2
5,774,433	-		Psyr_4865	0.65	+0.3
5,774,444	+		Psyr_4865	0.66	+1.0
5,774,444	+		Psyr_4865	0.66	+0.5
5,774,444	+		Psyr_4865	0.66	-0.9
5,774,444	+		Psyr_4865	0.66	-2.3
5,774,444	+		Psyr_4865	0.66	-0.2
5,774,444	+		Psyr_4865	0.66	-1.0
5,774,445	-		Psyr_4865	0.66	-0.1
5,774,445	-		Psyr_4865	0.66	+0.8
5,774,451	+		Psyr_4865	0.67	-0.4
5,774,451	+		Psyr_4865	0.67	+1.1
5,774,452	-		Psyr_4865	0.67	+0.4
5,774,595	-		Psyr_4865	0.80	+0.5
5,774,655	-		Psyr_4865	0.85	+0.4
5,774,711	+				-0.7
5,774,711	+				-1.6
5,774,711	+				-0.4
5,774,712	-				-0.7
5,774,712	-				-0.1
5,774,712	-				-0.7
5,774,724	+				+0.4
5,774,724	+				-0.5
5,774,724	+				+0.5
5,774,724	+				+0.7
5,774,724	+				-1.8
5,774,724	+				-0.9
5,774,726	+				-0.0
5,774,727	-				-0.6
5,774,727	-				-0.0
5,774,727	-				-1.5
5,774,727	-				+0.2
5,774,821	+				-0.5
5,774,821	+				+0.2
5,774,822	-				+1.4
5,774,822	-				+0.9
5,774,822	-				+0.3
5,774,832	+				-1.2
5,774,838	+				-0.6
5,774,865	+				+1.4
5,774,873	-				+1.0
5,775,012	+				+0.0
5,775,143	+		Psyr_4866	0.13	+1.5
5,775,144	-		Psyr_4866	0.13	+1.7
5,775,146	-		Psyr_4866	0.14	-3.6
5,775,259	+		Psyr_4866	0.22	+0.0
5,775,259	+		Psyr_4866	0.22	+0.1
5,775,261	-		Psyr_4866	0.22	+1.0
5,775,359	-		Psyr_4866	0.29	-0.8
5,775,359	-		Psyr_4866	0.29	-0.0
5,775,359	-		Psyr_4866	0.29	-0.5
5,775,362	+		Psyr_4866	0.29	+4.0
5,775,363	-		Psyr_4866	0.29	+0.5
5,775,439	-		Psyr_4866	0.35	+2.0
5,775,442	+		Psyr_4866	0.35	+2.7
5,775,493	+		Psyr_4866	0.39	-0.5