Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3875

Experiment: apoplastic, chopping recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, chopping recovery; Green bean
4,615,274	+				-0.4
4,615,274	+				+0.7
4,615,274	+				-2.6
4,615,288	+				-0.5
4,615,342	-				+1.3
4,615,342	-				+3.2
4,615,342	-				-0.5
4,615,391	-				+1.6
4,615,391	-				+1.1
4,615,398	+				+0.6
4,615,399	-				+1.5
4,615,483	+				+0.3
4,615,483	+				-0.7
4,615,483	+				+0.3
4,615,483	+				+0.4
4,615,484	-				+1.2
4,615,484	-				-0.7
4,615,484	-				-0.7
4,615,484	-				+1.1
4,615,516	+		Psyr_3874	0.13	-1.3
4,615,516	+		Psyr_3874	0.13	-0.3
4,615,516	+		Psyr_3874	0.13	+2.5
4,615,516	+		Psyr_3874	0.13	+0.9
4,615,516	+		Psyr_3874	0.13	-0.4
4,615,517	-		Psyr_3874	0.14	-2.7
4,615,517	-		Psyr_3874	0.14	+0.7
4,615,517	-		Psyr_3874	0.14	+0.0
4,615,677	+		Psyr_3874	0.34	+1.9
4,615,720	+		Psyr_3874	0.39	-0.9
4,615,720	+		Psyr_3874	0.39	+2.0
4,615,720	+		Psyr_3874	0.39	-2.1
4,615,720	+		Psyr_3874	0.39	-0.7
4,615,720	+		Psyr_3874	0.39	+1.3
4,615,720	+		Psyr_3874	0.39	+1.6
4,615,721	-		Psyr_3874	0.40	+0.3
4,615,721	-		Psyr_3874	0.40	-1.1
4,615,721	-		Psyr_3874	0.40	-1.4
4,615,721	-		Psyr_3874	0.40	+2.2
4,615,721	-		Psyr_3874	0.40	-0.9
4,615,721	-		Psyr_3874	0.40	-0.4
4,615,721	-		Psyr_3874	0.40	-0.8
4,615,721	-		Psyr_3874	0.40	-3.7
4,615,721	-		Psyr_3874	0.40	-0.6
4,615,721	-		Psyr_3874	0.40	+0.5
4,615,822	+		Psyr_3874	0.52	+1.0
4,615,850	-		Psyr_3874	0.56	-1.8
4,615,850	-		Psyr_3874	0.56	-1.1
4,616,009	-		Psyr_3874	0.76	-1.6
4,616,137	+				-2.1
4,616,137	+				+0.5
4,616,137	+				-0.3
4,616,138	-				+0.7
4,616,138	-				-0.3
4,616,138	-				+0.7
4,616,138	-				-2.1
4,616,138	-				-1.7
4,616,191	+				+0.5
4,616,191	+				+1.6
4,616,191	+				-4.1
4,616,191	+				-0.7
4,616,192	-				-2.0
4,616,192	-				-2.1
4,616,267	-				+1.0
4,616,466	+		Psyr_3875	0.27	+1.7
4,616,466	+		Psyr_3875	0.27	-1.3
4,616,467	-		Psyr_3875	0.27	+1.7
4,616,467	-		Psyr_3875	0.27	-0.5
4,616,571	+		Psyr_3875	0.41	+0.7
4,616,571	+		Psyr_3875	0.41	+0.3
4,616,571	+		Psyr_3875	0.41	-1.0
4,616,571	+		Psyr_3875	0.41	+0.7
4,616,572	-		Psyr_3875	0.41	+0.4
4,616,572	-		Psyr_3875	0.41	+2.9
4,616,572	-		Psyr_3875	0.41	-0.3
4,616,572	-		Psyr_3875	0.41	+1.9
4,616,622	+		Psyr_3875	0.48	-0.3
4,616,622	+		Psyr_3875	0.48	-0.0
4,616,622	+		Psyr_3875	0.48	-1.9
4,616,622	+		Psyr_3875	0.48	+0.1
4,616,623	-		Psyr_3875	0.48	-1.8
4,616,623	-		Psyr_3875	0.48	+2.9
4,616,631	+		Psyr_3875	0.49	+0.6
4,616,631	+		Psyr_3875	0.49	+0.7
4,616,632	-		Psyr_3875	0.50	+0.7
4,616,874	+		Psyr_3875	0.83	-1.4
4,616,875	-		Psyr_3875	0.83	-0.3
4,616,875	-		Psyr_3875	0.83	+1.1
4,616,886	+		Psyr_3875	0.84	+1.1
4,616,887	-		Psyr_3875	0.84	-0.5
4,616,913	+		Psyr_3875	0.88	+2.1
4,616,913	+		Psyr_3875	0.88	+0.3
4,616,914	-		Psyr_3875	0.88	+2.5
4,616,967	+				-3.0
4,616,967	+				+0.9
4,616,968	-				-0.9
4,616,968	-				+0.0
4,617,036	-				+0.6
4,617,036	-				-1.1
4,617,037	+				+1.1
4,617,037	+				-1.0
4,617,037	+				+1.1
4,617,037	+				+0.6
4,617,037	+				+1.3
4,617,037	+				+1.2
4,617,037	+				+0.4
4,617,037	+				+0.9
4,617,038	-				+0.4
4,617,038	-				+0.2
4,617,038	-				+1.4
4,617,179	+		Psyr_3876	0.26	-0.3
4,617,179	+		Psyr_3876	0.26	+0.3
4,617,179	+		Psyr_3876	0.26	+0.3
4,617,179	+		Psyr_3876	0.26	+0.1
4,617,180	-		Psyr_3876	0.26	+0.6
4,617,180	-		Psyr_3876	0.26	-1.1
4,617,180	-		Psyr_3876	0.26	-2.3
4,617,180	-		Psyr_3876	0.26	-0.9
4,617,180	-		Psyr_3876	0.26	+0.9
4,617,180	-		Psyr_3876	0.26	+1.1
4,617,185	+		Psyr_3876	0.27	+1.3
4,617,185	+		Psyr_3876	0.27	+1.6
4,617,185	+		Psyr_3876	0.27	-1.7
4,617,185	+		Psyr_3876	0.27	+1.0
4,617,185	+		Psyr_3876	0.27	+0.9
4,617,186	-		Psyr_3876	0.27	-0.5
4,617,209	+		Psyr_3876	0.30	+2.4
4,617,209	+		Psyr_3876	0.30	-1.1
4,617,209	+		Psyr_3876	0.30	+1.6
4,617,209	+		Psyr_3876	0.30	+0.3
4,617,209	+		Psyr_3876	0.30	-0.1
4,617,209	+		Psyr_3876	0.30	+2.1
4,617,209	+		Psyr_3876	0.30	-0.2
4,617,210	-		Psyr_3876	0.30	+1.7
4,617,210	-		Psyr_3876	0.30	+2.0
4,617,210	-		Psyr_3876	0.30	+1.5
4,617,210	-		Psyr_3876	0.30	-0.2
4,617,210	-		Psyr_3876	0.30	-0.5
4,617,210	-		Psyr_3876	0.30	+2.2
4,617,210	-		Psyr_3876	0.30	-1.7
4,617,211	+		Psyr_3876	0.30	+1.2
4,617,211	+		Psyr_3876	0.30	+0.6
4,617,211	+		Psyr_3876	0.30	+0.4
4,617,211	+		Psyr_3876	0.30	-2.1
4,617,211	+		Psyr_3876	0.30	-0.9
4,617,212	-		Psyr_3876	0.30	-1.1
4,617,212	-		Psyr_3876	0.30	-0.1
4,617,212	-		Psyr_3876	0.30	+0.9
4,617,213	+		Psyr_3876	0.31	-2.1
4,617,213	+		Psyr_3876	0.31	+1.1
4,617,213	+		Psyr_3876	0.31	-2.1
4,617,213	+		Psyr_3876	0.31	+0.8
4,617,213	+		Psyr_3876	0.31	+1.1
4,617,213	+		Psyr_3876	0.31	-0.9
4,617,213	+		Psyr_3876	0.31	-0.6
4,617,213	+		Psyr_3876	0.31	+0.4
4,617,214	-		Psyr_3876	0.31	-2.3
4,617,214	-		Psyr_3876	0.31	+0.9
4,617,214	-		Psyr_3876	0.31	+0.2
4,617,214	-		Psyr_3876	0.31	-0.0
4,617,214	-		Psyr_3876	0.31	+0.0
4,617,214	-		Psyr_3876	0.31	+1.0
4,617,214	-		Psyr_3876	0.31	+0.9
4,617,214	-		Psyr_3876	0.31	+3.1
4,617,214	-		Psyr_3876	0.31	-0.4
4,617,214	-		Psyr_3876	0.31	-0.4
4,617,214	-		Psyr_3876	0.31	+1.5
4,617,214	-		Psyr_3876	0.31	+1.1
4,617,214	-		Psyr_3876	0.31	+0.6
4,617,214	-		Psyr_3876	0.31	+0.3
4,617,214	-		Psyr_3876	0.31	+1.2
4,617,214	-		Psyr_3876	0.31	-0.2
4,617,214	-		Psyr_3876	0.31	+0.5
4,617,231	-		Psyr_3876	0.33	+2.2
4,617,242	+		Psyr_3876	0.35	-2.0
4,617,242	+		Psyr_3876	0.35	+0.9
4,617,243	-		Psyr_3876	0.35	+0.9
4,617,243	-		Psyr_3876	0.35	+1.8
4,617,243	-		Psyr_3876	0.35	-0.5
4,617,243	-		Psyr_3876	0.35	+1.5
4,617,243	-		Psyr_3876	0.35	-0.7
4,617,243	-		Psyr_3876	0.35	+0.6
4,617,341	+		Psyr_3876	0.49	-0.2
4,617,342	-		Psyr_3876	0.49	-1.6
4,617,440	+		Psyr_3876	0.62	+0.1
4,617,441	-		Psyr_3876	0.63	-0.1
4,617,441	-		Psyr_3876	0.63	+0.2
4,617,495	+		Psyr_3876	0.70	+1.5
4,617,495	+		Psyr_3876	0.70	-0.9
4,617,495	+		Psyr_3876	0.70	-1.2
4,617,495	+		Psyr_3876	0.70	+0.5
4,617,495	+		Psyr_3876	0.70	-1.4
4,617,495	+		Psyr_3876	0.70	-0.7
4,617,495	+		Psyr_3876	0.70	+1.8
4,617,495	+		Psyr_3876	0.70	+1.8
4,617,496	-		Psyr_3876	0.70	+0.8
4,617,496	-		Psyr_3876	0.70	+0.9
4,617,496	-		Psyr_3876	0.70	-1.1
4,617,496	-		Psyr_3876	0.70	+0.9
4,617,496	-		Psyr_3876	0.70	-0.1
4,617,496	-		Psyr_3876	0.70	+0.1
4,617,498	+		Psyr_3876	0.71	+0.1
4,617,498	+		Psyr_3876	0.71	+1.5
4,617,499	-		Psyr_3876	0.71	+0.8
4,617,499	-		Psyr_3876	0.71	+1.8
4,617,499	-		Psyr_3876	0.71	+0.6
4,617,499	-		Psyr_3876	0.71	+1.1
4,617,499	-		Psyr_3876	0.71	+1.5
4,617,623	+		Psyr_3876	0.88	-0.8
4,617,623	+		Psyr_3876	0.88	-2.7
4,617,624	-		Psyr_3876	0.88	-0.8
4,617,624	-		Psyr_3876	0.88	+1.7
4,617,624	-		Psyr_3876	0.88	-1.7
4,617,624	-		Psyr_3876	0.88	-0.7
4,617,730	+				+0.6
4,617,731	-				+0.8
4,617,818	+				+1.1
4,617,818	+				+1.5
4,617,818	+				+1.0
4,617,818	+				+0.5
4,617,818	+				-1.8
4,617,819	-				+0.6
4,617,819	-				-0.1
4,617,819	-				+0.5
4,617,819	-				+0.7
4,617,819	-				+2.3
4,617,819	-				+0.7
4,617,819	-				-1.6
4,617,819	-				+1.4