Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0501 and Psyr_0502 are separated by 23 nucleotides Psyr_0502 and Psyr_0503 are separated by 195 nucleotides
Psyr_0501: Psyr_0501 - MscS Mechanosensitive ion channel, at 544,287 to 547,691
_0501
Psyr_0502: Psyr_0502 - potassium/proton antiporter, CPA1 family, at 547,715 to 549,511
_0502
Psyr_0503: Psyr_0503 - conserved domain protein, at 549,707 to 552,841
_0503
Position (kb) 547
548
549
550 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 546.830 kb on - strand, within Psyr_0501 at 547.676 kb on + strand at 547.676 kb on + strand at 547.697 kb on + strand at 547.697 kb on + strand at 547.697 kb on + strand at 547.697 kb on + strand at 547.698 kb on - strand at 547.698 kb on - strand at 547.698 kb on - strand at 547.698 kb on - strand at 547.717 kb on - strand at 547.810 kb on + strand at 547.810 kb on + strand at 547.810 kb on + strand at 547.810 kb on + strand at 547.811 kb on - strand at 547.811 kb on - strand at 547.811 kb on - strand at 547.811 kb on - strand at 547.811 kb on - strand at 547.921 kb on - strand, within Psyr_0502 at 547.921 kb on - strand, within Psyr_0502 at 547.921 kb on - strand, within Psyr_0502 at 548.087 kb on - strand, within Psyr_0502 at 548.087 kb on - strand, within Psyr_0502 at 548.237 kb on + strand, within Psyr_0502 at 548.237 kb on + strand, within Psyr_0502 at 548.238 kb on - strand, within Psyr_0502 at 548.238 kb on - strand, within Psyr_0502 at 548.238 kb on - strand, within Psyr_0502 at 548.238 kb on - strand, within Psyr_0502 at 548.238 kb on - strand, within Psyr_0502 at 548.370 kb on + strand, within Psyr_0502 at 548.370 kb on + strand, within Psyr_0502 at 548.371 kb on - strand, within Psyr_0502 at 548.371 kb on - strand, within Psyr_0502 at 548.371 kb on - strand, within Psyr_0502 at 548.371 kb on - strand, within Psyr_0502 at 548.371 kb on - strand, within Psyr_0502 at 548.713 kb on - strand, within Psyr_0502 at 548.713 kb on - strand, within Psyr_0502 at 549.277 kb on - strand, within Psyr_0502 at 549.288 kb on + strand, within Psyr_0502 at 549.289 kb on - strand, within Psyr_0502 at 549.336 kb on - strand at 549.346 kb on + strand at 549.346 kb on + strand at 549.635 kb on + strand at 549.635 kb on + strand at 549.635 kb on + strand at 549.636 kb on - strand at 549.636 kb on - strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.639 kb on + strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.640 kb on - strand at 549.641 kb on + strand at 549.641 kb on + strand at 549.641 kb on + strand at 549.641 kb on + strand at 549.641 kb on + strand at 549.641 kb on + strand at 549.642 kb on - strand at 549.642 kb on - strand at 549.642 kb on - strand at 549.642 kb on - strand at 549.644 kb on - strand at 549.670 kb on + strand at 549.670 kb on + strand at 549.671 kb on - strand at 549.671 kb on - strand at 549.732 kb on - strand at 549.732 kb on - strand at 549.947 kb on + strand at 549.947 kb on + strand at 549.948 kb on - strand at 549.948 kb on - strand at 549.948 kb on - strand at 549.948 kb on - strand at 550.030 kb on + strand, within Psyr_0503 at 550.031 kb on - strand, within Psyr_0503 at 550.167 kb on - strand, within Psyr_0503 at 550.167 kb on - strand, within Psyr_0503 at 550.190 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.238 kb on + strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.239 kb on - strand, within Psyr_0503 at 550.269 kb on - strand, within Psyr_0503 at 550.269 kb on - strand, within Psyr_0503 at 550.278 kb on - strand, within Psyr_0503 at 550.313 kb on + strand, within Psyr_0503 at 550.313 kb on + strand, within Psyr_0503 at 550.313 kb on + strand, within Psyr_0503 at 550.314 kb on - strand, within Psyr_0503 at 550.314 kb on - strand, within Psyr_0503 at 550.372 kb on + strand, within Psyr_0503 at 550.401 kb on + strand, within Psyr_0503 at 550.401 kb on + strand, within Psyr_0503 at 550.402 kb on - strand, within Psyr_0503 at 550.402 kb on - strand, within Psyr_0503 at 550.402 kb on - strand, within Psyr_0503 at 550.402 kb on - strand, within Psyr_0503
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 546,830 - Psyr_0501 0.75 -0.9 547,676 + +0.9 547,676 + +0.9 547,697 + -2.2 547,697 + +1.7 547,697 + -0.1 547,697 + -1.7 547,698 - +4.6 547,698 - -0.1 547,698 - -0.2 547,698 - +1.5 547,717 - -1.0 547,810 + -1.4 547,810 + +1.1 547,810 + -3.7 547,810 + +0.2 547,811 - -3.2 547,811 - +0.5 547,811 - +0.1 547,811 - -1.2 547,811 - -0.5 547,921 - Psyr_0502 0.11 -1.0 547,921 - Psyr_0502 0.11 +1.1 547,921 - Psyr_0502 0.11 +2.4 548,087 - Psyr_0502 0.21 +1.1 548,087 - Psyr_0502 0.21 -1.2 548,237 + Psyr_0502 0.29 -3.5 548,237 + Psyr_0502 0.29 -0.3 548,238 - Psyr_0502 0.29 +0.7 548,238 - Psyr_0502 0.29 -1.5 548,238 - Psyr_0502 0.29 +2.0 548,238 - Psyr_0502 0.29 +2.6 548,238 - Psyr_0502 0.29 -1.5 548,370 + Psyr_0502 0.36 +0.3 548,370 + Psyr_0502 0.36 -2.2 548,371 - Psyr_0502 0.37 -0.5 548,371 - Psyr_0502 0.37 +1.0 548,371 - Psyr_0502 0.37 -0.8 548,371 - Psyr_0502 0.37 +2.0 548,371 - Psyr_0502 0.37 -1.3 548,713 - Psyr_0502 0.56 -0.2 548,713 - Psyr_0502 0.56 +0.1 549,277 - Psyr_0502 0.87 -1.5 549,288 + Psyr_0502 0.88 -0.3 549,289 - Psyr_0502 0.88 +0.7 549,336 - +0.7 549,346 + -0.3 549,346 + -0.9 549,635 + +1.3 549,635 + +0.8 549,635 + +1.5 549,636 - -1.3 549,636 - +1.7 549,639 + +0.9 549,639 + +1.3 549,639 + +0.6 549,639 + -2.9 549,639 + +1.1 549,639 + +0.5 549,639 + -2.3 549,639 + +0.5 549,639 + +0.3 549,639 + -1.2 549,639 + +0.3 549,639 + +0.3 549,639 + +2.2 549,639 + +1.1 549,639 + -0.6 549,639 + -0.3 549,639 + +0.1 549,639 + +0.9 549,639 + +1.2 549,639 + +0.5 549,639 + +1.2 549,639 + +1.4 549,639 + +0.1 549,639 + -0.4 549,639 + +0.9 549,639 + -2.5 549,639 + +0.4 549,639 + -0.4 549,639 + -1.2 549,639 + +1.4 549,639 + -0.8 549,639 + -0.1 549,639 + +0.8 549,639 + +0.8 549,639 + -0.3 549,639 + +1.1 549,639 + -3.6 549,639 + -1.6 549,639 + -0.3 549,639 + -1.2 549,639 + +1.0 549,639 + -2.1 549,639 + -1.1 549,639 + -2.9 549,639 + +0.8 549,639 + +0.5 549,640 - -1.8 549,640 - -1.1 549,640 - +1.4 549,640 - -1.1 549,640 - -0.0 549,640 - +0.8 549,640 - +0.5 549,640 - +1.6 549,640 - +0.3 549,640 - -0.0 549,640 - +1.3 549,640 - +2.9 549,640 - +2.5 549,640 - -1.2 549,640 - +0.6 549,640 - +0.8 549,640 - +0.5 549,640 - -0.7 549,640 - -1.7 549,640 - +0.1 549,640 - -0.7 549,640 - -1.3 549,640 - +0.7 549,640 - +1.1 549,640 - -0.6 549,640 - -0.5 549,640 - -0.9 549,640 - +2.8 549,640 - +1.9 549,640 - -2.2 549,640 - -1.6 549,640 - -0.6 549,640 - +1.3 549,640 - +1.0 549,640 - +0.6 549,640 - +1.5 549,640 - -2.4 549,640 - +1.8 549,640 - +0.9 549,640 - -0.6 549,640 - +0.5 549,640 - +0.2 549,640 - -0.5 549,640 - -2.3 549,640 - -0.1 549,640 - -3.0 549,640 - -2.1 549,640 - -0.3 549,640 - -1.4 549,640 - +1.1 549,640 - -0.2 549,640 - -0.5 549,640 - +2.4 549,640 - +0.8 549,640 - +0.3 549,640 - -0.2 549,640 - -0.5 549,641 + +0.4 549,641 + -2.3 549,641 + -1.2 549,641 + +1.0 549,641 + -1.9 549,641 + +0.7 549,642 - -1.5 549,642 - +2.1 549,642 - +0.9 549,642 - +0.0 549,644 - -0.8 549,670 + +0.8 549,670 + +0.2 549,671 - +0.1 549,671 - +2.0 549,732 - -1.2 549,732 - +0.6 549,947 + +0.1 549,947 + +1.7 549,948 - -1.6 549,948 - +0.5 549,948 - +0.4 549,948 - +2.5 550,030 + Psyr_0503 0.10 +0.8 550,031 - Psyr_0503 0.10 +0.8 550,167 - Psyr_0503 0.15 +0.9 550,167 - Psyr_0503 0.15 -2.4 550,190 + Psyr_0503 0.15 -3.5 550,238 + Psyr_0503 0.17 -0.2 550,238 + Psyr_0503 0.17 +1.4 550,238 + Psyr_0503 0.17 -2.3 550,238 + Psyr_0503 0.17 -0.3 550,238 + Psyr_0503 0.17 -0.9 550,238 + Psyr_0503 0.17 -0.7 550,238 + Psyr_0503 0.17 +0.0 550,238 + Psyr_0503 0.17 +0.9 550,238 + Psyr_0503 0.17 -0.1 550,238 + Psyr_0503 0.17 -1.2 550,238 + Psyr_0503 0.17 -2.1 550,238 + Psyr_0503 0.17 +1.2 550,238 + Psyr_0503 0.17 -2.1 550,238 + Psyr_0503 0.17 -1.2 550,238 + Psyr_0503 0.17 +0.7 550,239 - Psyr_0503 0.17 +1.8 550,239 - Psyr_0503 0.17 -3.0 550,239 - Psyr_0503 0.17 -0.1 550,239 - Psyr_0503 0.17 -0.9 550,239 - Psyr_0503 0.17 +2.0 550,239 - Psyr_0503 0.17 -0.0 550,239 - Psyr_0503 0.17 -0.4 550,239 - Psyr_0503 0.17 +2.0 550,239 - Psyr_0503 0.17 -0.8 550,239 - Psyr_0503 0.17 +3.5 550,269 - Psyr_0503 0.18 -2.3 550,269 - Psyr_0503 0.18 +0.5 550,278 - Psyr_0503 0.18 +1.0 550,313 + Psyr_0503 0.19 -1.3 550,313 + Psyr_0503 0.19 +0.6 550,313 + Psyr_0503 0.19 -1.2 550,314 - Psyr_0503 0.19 -2.2 550,314 - Psyr_0503 0.19 +1.5 550,372 + Psyr_0503 0.21 +0.2 550,401 + Psyr_0503 0.22 -1.7 550,401 + Psyr_0503 0.22 +0.6 550,402 - Psyr_0503 0.22 -2.1 550,402 - Psyr_0503 0.22 -0.1 550,402 - Psyr_0503 0.22 -0.3 550,402 - Psyr_0503 0.22 -0.4
Or see this region's nucleotide sequence