Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0290

Experiment: apoplastic, chopping recovery; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0289 and Psyr_0290 are separated by 122 nucleotidesPsyr_0290 and Psyr_0291 are separated by 186 nucleotides Psyr_0289: Psyr_0289 - Radical SAM, at 307,483 to 308,541 _0289 Psyr_0290: Psyr_0290 - ThiJ/PfpI, at 308,664 to 309,332 _0290 Psyr_0291: Psyr_0291 - DedA, at 309,519 to 310,181 _0291 Position (kb) 308 309 310Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 307.772 kb on + strand, within Psyr_0289at 307.772 kb on + strand, within Psyr_0289at 307.772 kb on + strand, within Psyr_0289at 307.772 kb on + strand, within Psyr_0289at 307.772 kb on + strand, within Psyr_0289at 307.772 kb on + strand, within Psyr_0289at 307.773 kb on - strand, within Psyr_0289at 307.773 kb on - strand, within Psyr_0289at 307.773 kb on - strand, within Psyr_0289at 307.773 kb on - strand, within Psyr_0289at 308.059 kb on - strand, within Psyr_0289at 308.280 kb on - strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.508 kb on + strandat 308.550 kb on - strandat 308.555 kb on + strandat 308.581 kb on - strandat 308.582 kb on + strandat 308.582 kb on + strandat 308.582 kb on + strandat 308.582 kb on + strandat 308.583 kb on - strandat 308.583 kb on - strandat 308.583 kb on - strandat 308.583 kb on - strandat 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.896 kb on + strand, within Psyr_0290at 308.897 kb on - strand, within Psyr_0290at 308.897 kb on - strand, within Psyr_0290at 308.897 kb on - strand, within Psyr_0290at 309.313 kb on - strandat 309.375 kb on - strandat 309.400 kb on - strandat 309.681 kb on + strand, within Psyr_0291at 309.681 kb on + strand, within Psyr_0291at 309.709 kb on + strand, within Psyr_0291at 309.709 kb on + strand, within Psyr_0291at 309.710 kb on - strand, within Psyr_0291at 309.818 kb on - strand, within Psyr_0291at 309.878 kb on - strand, within Psyr_0291at 310.006 kb on + strand, within Psyr_0291at 310.006 kb on + strand, within Psyr_0291at 310.006 kb on + strand, within Psyr_0291at 310.006 kb on + strand, within Psyr_0291at 310.007 kb on - strand, within Psyr_0291at 310.007 kb on - strand, within Psyr_0291at 310.007 kb on - strand, within Psyr_0291at 310.027 kb on + strand, within Psyr_0291at 310.072 kb on + strand, within Psyr_0291at 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.261 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean
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307,772 + Psyr_0289 0.27 +0.5
307,772 + Psyr_0289 0.27 +0.8
307,772 + Psyr_0289 0.27 -1.3
307,772 + Psyr_0289 0.27 +0.7
307,772 + Psyr_0289 0.27 +0.6
307,772 + Psyr_0289 0.27 +1.3
307,773 - Psyr_0289 0.27 -2.1
307,773 - Psyr_0289 0.27 +0.1
307,773 - Psyr_0289 0.27 -1.7
307,773 - Psyr_0289 0.27 +0.2
308,059 - Psyr_0289 0.54 +1.7
308,280 - Psyr_0289 0.75 +1.5
308,306 + Psyr_0289 0.78 -0.7
308,306 + Psyr_0289 0.78 -1.2
308,306 + Psyr_0289 0.78 -0.6
308,306 + Psyr_0289 0.78 -2.2
308,306 + Psyr_0289 0.78 +0.4
308,306 + Psyr_0289 0.78 -0.5
308,306 + Psyr_0289 0.78 +0.2
308,306 + Psyr_0289 0.78 +0.5
308,306 + Psyr_0289 0.78 +0.5
308,307 - Psyr_0289 0.78 +0.5
308,307 - Psyr_0289 0.78 +0.0
308,307 - Psyr_0289 0.78 +0.3
308,307 - Psyr_0289 0.78 +0.9
308,307 - Psyr_0289 0.78 -0.6
308,307 - Psyr_0289 0.78 +0.6
308,307 - Psyr_0289 0.78 +1.1
308,307 - Psyr_0289 0.78 -2.4
308,307 - Psyr_0289 0.78 +1.0
308,307 - Psyr_0289 0.78 +0.8
308,508 + -2.1
308,550 - -3.7
308,555 + -0.2
308,581 - -3.0
308,582 + +2.5
308,582 + +0.4
308,582 + +0.1
308,582 + +0.3
308,583 - -1.6
308,583 - +0.3
308,583 - -2.2
308,583 - -0.6
308,755 + Psyr_0290 0.14 +0.6
308,755 + Psyr_0290 0.14 -0.5
308,755 + Psyr_0290 0.14 -0.5
308,755 + Psyr_0290 0.14 -1.2
308,755 + Psyr_0290 0.14 -0.7
308,755 + Psyr_0290 0.14 +1.8
308,755 + Psyr_0290 0.14 +2.2
308,756 - Psyr_0290 0.14 +0.1
308,756 - Psyr_0290 0.14 -2.9
308,756 - Psyr_0290 0.14 -1.7
308,756 - Psyr_0290 0.14 -2.1
308,756 - Psyr_0290 0.14 +0.0
308,756 - Psyr_0290 0.14 -0.2
308,756 - Psyr_0290 0.14 -1.1
308,756 - Psyr_0290 0.14 -1.2
308,896 + Psyr_0290 0.35 +0.4
308,897 - Psyr_0290 0.35 +1.0
308,897 - Psyr_0290 0.35 +0.1
308,897 - Psyr_0290 0.35 +1.3
309,313 - +2.1
309,375 - +0.6
309,400 - +4.1
309,681 + Psyr_0291 0.24 +0.3
309,681 + Psyr_0291 0.24 -0.6
309,709 + Psyr_0291 0.29 +0.7
309,709 + Psyr_0291 0.29 -1.1
309,710 - Psyr_0291 0.29 -0.2
309,818 - Psyr_0291 0.45 +0.1
309,878 - Psyr_0291 0.54 -2.2
310,006 + Psyr_0291 0.73 +0.0
310,006 + Psyr_0291 0.73 -0.3
310,006 + Psyr_0291 0.73 +0.4
310,006 + Psyr_0291 0.73 -1.8
310,007 - Psyr_0291 0.74 -0.8
310,007 - Psyr_0291 0.74 +0.1
310,007 - Psyr_0291 0.74 +0.5
310,027 + Psyr_0291 0.77 -2.6
310,072 + Psyr_0291 0.83 +2.1
310,246 + +0.6
310,246 + -2.1
310,246 + -0.9
310,246 + +0.1
310,246 + -0.6
310,246 + -0.6
310,246 + +0.5
310,246 + +0.1
310,247 - +0.4
310,247 - -0.3
310,247 - +0.9
310,247 - -2.3
310,247 - -0.7
310,247 - -0.9
310,247 - +0.4
310,247 - -2.2
310,247 - -1.5
310,247 - -2.1
310,247 - -1.4
310,247 - -0.4
310,247 - -0.1
310,247 - +0.1
310,247 - +0.7
310,247 - -0.2
310,261 + -1.2

Or see this region's nucleotide sequence