Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_852 and PfGW456L13_853 are separated by 124 nucleotides PfGW456L13_853 and PfGW456L13_854 are separated by 119 nucleotides PfGW456L13_854 and PfGW456L13_855 are separated by 463 nucleotides
PfGW456L13_852 - FIG00954215: hypothetical protein, at 958,640 to 958,924
_852
PfGW456L13_853 - Glutathione S-transferase N-terminal domain protein (EC 2.5.1.18), at 959,049 to 959,708
_853
PfGW456L13_854 - Argininosuccinate lyase (EC 4.3.2.1), at 959,828 to 961,222
_854
PfGW456L13_855 - Autolysis response regulater LytR, at 961,686 to 962,432
_855
Position (kb) 959
960
961
962 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 959.005 kb on + strand at 959.005 kb on + strand at 959.006 kb on - strand at 959.006 kb on - strand at 959.006 kb on - strand at 959.006 kb on - strand at 959.007 kb on + strand at 959.007 kb on + strand at 959.007 kb on + strand at 959.008 kb on - strand at 959.008 kb on - strand at 959.078 kb on + strand at 959.078 kb on + strand at 959.078 kb on + strand at 959.078 kb on + strand at 959.082 kb on + strand at 959.082 kb on + strand at 959.082 kb on + strand at 959.082 kb on + strand at 959.082 kb on + strand at 959.082 kb on + strand at 959.083 kb on - strand at 959.083 kb on - strand at 959.083 kb on - strand at 959.083 kb on - strand at 959.083 kb on - strand at 959.083 kb on - strand at 959.083 kb on - strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.085 kb on + strand at 959.086 kb on - strand at 959.086 kb on - strand at 959.086 kb on - strand at 959.086 kb on - strand at 959.086 kb on - strand at 959.086 kb on - strand at 959.086 kb on - strand at 959.086 kb on - strand at 959.086 kb on - strand at 959.137 kb on + strand, within PfGW456L13_853 at 959.137 kb on + strand, within PfGW456L13_853 at 959.137 kb on + strand, within PfGW456L13_853 at 959.137 kb on + strand, within PfGW456L13_853 at 959.145 kb on + strand, within PfGW456L13_853 at 959.146 kb on - strand, within PfGW456L13_853 at 959.146 kb on - strand, within PfGW456L13_853 at 959.146 kb on - strand, within PfGW456L13_853 at 959.146 kb on - strand, within PfGW456L13_853 at 959.146 kb on - strand, within PfGW456L13_853 at 959.209 kb on + strand, within PfGW456L13_853 at 959.209 kb on + strand, within PfGW456L13_853 at 959.210 kb on - strand, within PfGW456L13_853 at 959.250 kb on + strand, within PfGW456L13_853 at 959.250 kb on + strand, within PfGW456L13_853 at 959.250 kb on + strand, within PfGW456L13_853 at 959.250 kb on + strand, within PfGW456L13_853 at 959.250 kb on + strand, within PfGW456L13_853 at 959.251 kb on - strand, within PfGW456L13_853 at 959.251 kb on - strand, within PfGW456L13_853 at 959.251 kb on - strand, within PfGW456L13_853 at 959.343 kb on + strand, within PfGW456L13_853 at 959.343 kb on + strand, within PfGW456L13_853 at 959.343 kb on + strand, within PfGW456L13_853 at 959.343 kb on + strand, within PfGW456L13_853 at 959.344 kb on - strand, within PfGW456L13_853 at 959.344 kb on - strand, within PfGW456L13_853 at 959.344 kb on - strand, within PfGW456L13_853 at 959.344 kb on - strand, within PfGW456L13_853 at 959.371 kb on - strand, within PfGW456L13_853 at 959.482 kb on - strand, within PfGW456L13_853 at 959.482 kb on - strand, within PfGW456L13_853 at 959.482 kb on - strand, within PfGW456L13_853 at 959.482 kb on - strand, within PfGW456L13_853 at 959.482 kb on - strand, within PfGW456L13_853 at 959.482 kb on - strand at 959.482 kb on - strand, within PfGW456L13_853 at 959.482 kb on - strand, within PfGW456L13_853 at 959.517 kb on + strand, within PfGW456L13_853 at 959.517 kb on + strand, within PfGW456L13_853 at 959.517 kb on + strand, within PfGW456L13_853 at 959.517 kb on + strand, within PfGW456L13_853 at 959.517 kb on + strand, within PfGW456L13_853 at 959.517 kb on + strand, within PfGW456L13_853 at 959.517 kb on + strand, within PfGW456L13_853 at 959.518 kb on - strand, within PfGW456L13_853 at 959.706 kb on + strand at 959.789 kb on + strand at 959.789 kb on + strand at 959.789 kb on + strand at 959.789 kb on + strand at 959.790 kb on - strand at 959.790 kb on - strand at 959.790 kb on - strand at 959.790 kb on - strand at 959.790 kb on - strand at 959.829 kb on + strand at 960.027 kb on + strand, within PfGW456L13_854 at 960.028 kb on - strand, within PfGW456L13_854 at 960.091 kb on - strand, within PfGW456L13_854 at 960.091 kb on - strand, within PfGW456L13_854 at 960.258 kb on + strand, within PfGW456L13_854 at 960.259 kb on - strand, within PfGW456L13_854 at 960.576 kb on + strand, within PfGW456L13_854 at 960.577 kb on - strand, within PfGW456L13_854 at 961.117 kb on - strand at 961.235 kb on - strand at 961.247 kb on + strand at 961.247 kb on + strand at 961.248 kb on - strand at 961.248 kb on - strand at 961.248 kb on - strand at 961.277 kb on + strand at 961.277 kb on + strand at 961.277 kb on + strand at 961.278 kb on - strand at 961.278 kb on - strand at 961.278 kb on - strand at 961.278 kb on - strand at 961.278 kb on - strand at 961.278 kb on - strand at 961.314 kb on + strand at 961.314 kb on + strand at 961.315 kb on - strand at 961.315 kb on - strand at 961.378 kb on - strand at 961.378 kb on - strand at 961.414 kb on + strand at 961.414 kb on + strand at 961.414 kb on + strand at 961.415 kb on - strand at 961.427 kb on + strand at 961.428 kb on - strand at 961.428 kb on - strand at 961.428 kb on - strand at 961.428 kb on - strand at 961.428 kb on - strand at 961.462 kb on + strand at 961.462 kb on + strand at 961.462 kb on + strand at 961.462 kb on + strand at 961.462 kb on + strand at 961.462 kb on + strand at 961.462 kb on + strand at 961.462 kb on + strand at 961.462 kb on + strand at 961.463 kb on - strand at 961.463 kb on - strand at 961.463 kb on - strand at 961.463 kb on - strand at 961.463 kb on - strand at 961.464 kb on + strand at 961.464 kb on + strand at 961.464 kb on + strand at 961.464 kb on + strand at 961.464 kb on + strand at 961.465 kb on - strand at 961.465 kb on - strand at 961.465 kb on - strand at 961.465 kb on - strand at 961.465 kb on - strand at 961.484 kb on + strand at 961.484 kb on + strand at 961.484 kb on + strand at 961.485 kb on - strand at 961.485 kb on - strand at 961.485 kb on - strand at 961.485 kb on - strand at 961.485 kb on - strand at 961.485 kb on - strand at 961.485 kb on - strand at 961.492 kb on - strand at 961.605 kb on + strand at 961.605 kb on + strand at 961.605 kb on + strand at 961.606 kb on - strand at 961.643 kb on + strand at 961.643 kb on + strand at 961.643 kb on + strand at 961.643 kb on + strand at 961.643 kb on + strand at 961.644 kb on - strand at 961.644 kb on - strand at 961.649 kb on - strand at 961.685 kb on + strand at 961.685 kb on + strand at 961.685 kb on + strand at 961.685 kb on + strand at 961.686 kb on - strand at 961.686 kb on - strand at 961.761 kb on + strand, within PfGW456L13_855 at 961.761 kb on + strand, within PfGW456L13_855 at 961.761 kb on + strand, within PfGW456L13_855 at 961.762 kb on - strand, within PfGW456L13_855 at 961.762 kb on - strand, within PfGW456L13_855 at 961.778 kb on + strand, within PfGW456L13_855 at 961.779 kb on - strand, within PfGW456L13_855 at 961.779 kb on - strand, within PfGW456L13_855 at 961.833 kb on - strand, within PfGW456L13_855 at 961.961 kb on - strand, within PfGW456L13_855 at 961.980 kb on + strand, within PfGW456L13_855 at 961.980 kb on + strand, within PfGW456L13_855 at 961.981 kb on - strand, within PfGW456L13_855 at 961.981 kb on - strand, within PfGW456L13_855 at 961.981 kb on - strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.011 kb on + strand, within PfGW456L13_855 at 962.012 kb on - strand, within PfGW456L13_855 at 962.012 kb on - strand, within PfGW456L13_855 at 962.012 kb on - strand, within PfGW456L13_855 at 962.012 kb on - strand, within PfGW456L13_855 at 962.012 kb on - strand, within PfGW456L13_855 at 962.012 kb on - strand, within PfGW456L13_855 at 962.012 kb on - strand, within PfGW456L13_855 at 962.012 kb on - strand, within PfGW456L13_855 at 962.012 kb on - strand, within PfGW456L13_855 at 962.023 kb on + strand, within PfGW456L13_855 at 962.024 kb on - strand, within PfGW456L13_855 at 962.108 kb on + strand, within PfGW456L13_855 at 962.108 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.163 kb on + strand, within PfGW456L13_855 at 962.164 kb on - strand, within PfGW456L13_855 at 962.164 kb on - strand, within PfGW456L13_855 at 962.184 kb on + strand, within PfGW456L13_855 at 962.184 kb on + strand, within PfGW456L13_855 at 962.184 kb on + strand, within PfGW456L13_855 at 962.184 kb on + strand, within PfGW456L13_855 at 962.184 kb on + strand, within PfGW456L13_855 at 962.184 kb on + strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855 at 962.185 kb on - strand, within PfGW456L13_855
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 959,005 + +0.2 959,005 + -0.3 959,006 - +0.3 959,006 - +0.4 959,006 - +0.4 959,006 - -2.1 959,007 + +1.6 959,007 + +1.0 959,007 + -0.9 959,008 - -0.9 959,008 - -0.9 959,078 + -0.5 959,078 + +0.2 959,078 + -0.4 959,078 + +0.0 959,082 + -0.2 959,082 + -0.1 959,082 + -1.0 959,082 + -0.4 959,082 + -1.2 959,082 + +0.1 959,083 - -0.2 959,083 - -0.1 959,083 - +0.7 959,083 - +0.6 959,083 - +0.0 959,083 - -0.4 959,083 - +0.6 959,085 + -0.1 959,085 + +0.1 959,085 + -0.1 959,085 + +0.1 959,085 + +0.9 959,085 + +0.3 959,085 + -0.6 959,085 + -1.1 959,085 + +0.6 959,085 + -0.1 959,085 + +0.2 959,085 + +0.0 959,086 - +0.5 959,086 - +0.2 959,086 - -0.1 959,086 - +0.2 959,086 - +0.5 959,086 - -0.1 959,086 - +0.1 959,086 - -0.4 959,086 - -0.5 959,137 + PfGW456L13_853 0.13 -0.2 959,137 + PfGW456L13_853 0.13 +0.0 959,137 + PfGW456L13_853 0.13 -0.5 959,137 + PfGW456L13_853 0.13 -0.2 959,145 + PfGW456L13_853 0.15 -0.4 959,146 - PfGW456L13_853 0.15 -0.5 959,146 - PfGW456L13_853 0.15 +1.3 959,146 - PfGW456L13_853 0.15 -0.6 959,146 - PfGW456L13_853 0.15 +0.1 959,146 - PfGW456L13_853 0.15 +0.2 959,209 + PfGW456L13_853 0.24 -0.3 959,209 + PfGW456L13_853 0.24 -0.4 959,210 - PfGW456L13_853 0.24 +0.5 959,250 + PfGW456L13_853 0.30 +0.4 959,250 + PfGW456L13_853 0.30 +0.9 959,250 + PfGW456L13_853 0.30 -0.3 959,250 + PfGW456L13_853 0.30 +0.5 959,250 + PfGW456L13_853 0.30 -0.3 959,251 - PfGW456L13_853 0.31 +0.5 959,251 - PfGW456L13_853 0.31 -1.4 959,251 - PfGW456L13_853 0.31 -0.4 959,343 + PfGW456L13_853 0.45 +0.4 959,343 + PfGW456L13_853 0.45 -1.1 959,343 + PfGW456L13_853 0.45 -0.1 959,343 + PfGW456L13_853 0.45 -1.3 959,344 - PfGW456L13_853 0.45 -0.4 959,344 - PfGW456L13_853 0.45 +0.1 959,344 - PfGW456L13_853 0.45 +0.4 959,344 - PfGW456L13_853 0.45 -0.4 959,371 - PfGW456L13_853 0.49 +0.3 959,482 - PfGW456L13_853 0.66 +0.6 959,482 - PfGW456L13_853 0.66 +0.1 959,482 - PfGW456L13_853 0.66 +0.7 959,482 - PfGW456L13_853 0.66 +0.3 959,482 - PfGW456L13_853 0.66 -0.2 959,482 - +0.8 959,482 - PfGW456L13_853 0.66 +0.1 959,482 - PfGW456L13_853 0.66 -0.8 959,517 + PfGW456L13_853 0.71 -0.5 959,517 + PfGW456L13_853 0.71 +0.7 959,517 + PfGW456L13_853 0.71 -0.1 959,517 + PfGW456L13_853 0.71 -0.0 959,517 + PfGW456L13_853 0.71 -0.7 959,517 + PfGW456L13_853 0.71 -0.0 959,517 + PfGW456L13_853 0.71 -0.0 959,518 - PfGW456L13_853 0.71 -0.2 959,706 + -0.6 959,789 + -0.5 959,789 + +0.5 959,789 + -0.8 959,789 + +1.0 959,790 - +2.2 959,790 - +0.4 959,790 - -0.5 959,790 - +0.6 959,790 - +0.4 959,829 + +0.5 960,027 + PfGW456L13_854 0.14 -1.4 960,028 - PfGW456L13_854 0.14 -1.5 960,091 - PfGW456L13_854 0.19 -0.7 960,091 - PfGW456L13_854 0.19 -2.4 960,258 + PfGW456L13_854 0.31 +0.2 960,259 - PfGW456L13_854 0.31 -1.0 960,576 + PfGW456L13_854 0.54 -2.4 960,577 - PfGW456L13_854 0.54 -1.7 961,117 - -2.7 961,235 - -1.1 961,247 + -2.7 961,247 + -2.4 961,248 - +0.5 961,248 - -0.1 961,248 - +0.3 961,277 + -1.1 961,277 + +0.5 961,277 + -0.7 961,278 - +0.3 961,278 - +0.3 961,278 - -0.3 961,278 - -0.0 961,278 - +0.6 961,278 - -1.0 961,314 + +0.3 961,314 + -0.6 961,315 - +0.1 961,315 - +0.4 961,378 - -0.1 961,378 - +0.1 961,414 + -0.5 961,414 + -0.5 961,414 + -0.3 961,415 - +0.1 961,427 + -0.1 961,428 - -0.8 961,428 - -0.6 961,428 - -0.2 961,428 - +0.4 961,428 - +1.1 961,462 + +0.1 961,462 + +0.0 961,462 + -1.1 961,462 + -1.0 961,462 + -0.2 961,462 + -0.5 961,462 + +0.3 961,462 + +0.2 961,462 + -0.4 961,463 - -1.3 961,463 - +0.8 961,463 - -0.4 961,463 - -0.8 961,463 - -0.2 961,464 + -0.1 961,464 + +0.8 961,464 + +0.8 961,464 + -1.4 961,464 + -0.3 961,465 - -0.6 961,465 - +0.8 961,465 - -0.6 961,465 - -0.1 961,465 - +0.1 961,484 + -0.1 961,484 + -0.3 961,484 + -0.7 961,485 - -1.4 961,485 - +0.9 961,485 - +0.5 961,485 - -0.3 961,485 - -0.0 961,485 - +0.5 961,485 - +0.6 961,492 - -0.3 961,605 + +0.2 961,605 + +0.2 961,605 + +0.2 961,606 - +0.1 961,643 + +0.1 961,643 + -0.3 961,643 + +0.8 961,643 + -0.6 961,643 + +1.3 961,644 - -0.1 961,644 - +1.5 961,649 - -0.3 961,685 + -0.7 961,685 + -1.2 961,685 + -0.6 961,685 + +0.1 961,686 - +0.3 961,686 - +0.3 961,761 + PfGW456L13_855 0.10 +1.0 961,761 + PfGW456L13_855 0.10 -0.7 961,761 + PfGW456L13_855 0.10 -0.2 961,762 - PfGW456L13_855 0.10 +0.2 961,762 - PfGW456L13_855 0.10 -0.2 961,778 + PfGW456L13_855 0.12 -1.1 961,779 - PfGW456L13_855 0.12 +1.3 961,779 - PfGW456L13_855 0.12 -0.1 961,833 - PfGW456L13_855 0.20 -0.0 961,961 - PfGW456L13_855 0.37 +0.3 961,980 + PfGW456L13_855 0.39 -1.2 961,980 + PfGW456L13_855 0.39 -2.1 961,981 - PfGW456L13_855 0.39 +0.2 961,981 - PfGW456L13_855 0.39 +0.1 961,981 - PfGW456L13_855 0.39 -0.7 962,011 + PfGW456L13_855 0.44 -0.9 962,011 + PfGW456L13_855 0.44 +0.5 962,011 + PfGW456L13_855 0.44 +0.4 962,011 + PfGW456L13_855 0.44 -1.1 962,011 + PfGW456L13_855 0.44 +0.4 962,011 + PfGW456L13_855 0.44 -1.2 962,011 + PfGW456L13_855 0.44 +0.2 962,011 + PfGW456L13_855 0.44 +0.7 962,011 + PfGW456L13_855 0.44 -1.0 962,011 + PfGW456L13_855 0.44 +1.0 962,011 + PfGW456L13_855 0.44 +0.5 962,012 - PfGW456L13_855 0.44 -0.3 962,012 - PfGW456L13_855 0.44 -0.3 962,012 - PfGW456L13_855 0.44 +0.1 962,012 - PfGW456L13_855 0.44 -0.1 962,012 - PfGW456L13_855 0.44 +0.3 962,012 - PfGW456L13_855 0.44 +1.6 962,012 - PfGW456L13_855 0.44 +0.6 962,012 - PfGW456L13_855 0.44 +0.3 962,012 - PfGW456L13_855 0.44 +1.0 962,023 + PfGW456L13_855 0.45 +0.0 962,024 - PfGW456L13_855 0.45 +0.7 962,108 + PfGW456L13_855 0.56 +1.0 962,108 + PfGW456L13_855 0.56 +0.8 962,163 + PfGW456L13_855 0.64 +0.2 962,163 + PfGW456L13_855 0.64 -3.1 962,163 + PfGW456L13_855 0.64 -0.7 962,163 + PfGW456L13_855 0.64 +0.3 962,163 + PfGW456L13_855 0.64 -1.6 962,163 + PfGW456L13_855 0.64 -0.6 962,163 + PfGW456L13_855 0.64 +0.4 962,163 + PfGW456L13_855 0.64 -0.6 962,163 + PfGW456L13_855 0.64 +0.4 962,163 + PfGW456L13_855 0.64 -0.1 962,164 - PfGW456L13_855 0.64 -0.4 962,164 - PfGW456L13_855 0.64 +0.7 962,184 + PfGW456L13_855 0.67 +1.7 962,184 + PfGW456L13_855 0.67 -0.3 962,184 + PfGW456L13_855 0.67 +0.8 962,184 + PfGW456L13_855 0.67 -0.2 962,184 + PfGW456L13_855 0.67 +0.4 962,184 + PfGW456L13_855 0.67 -0.2 962,185 - PfGW456L13_855 0.67 -0.2 962,185 - PfGW456L13_855 0.67 +0.8 962,185 - PfGW456L13_855 0.67 -0.6 962,185 - PfGW456L13_855 0.67 +0.4 962,185 - PfGW456L13_855 0.67 +0.7 962,185 - PfGW456L13_855 0.67 +0.1 962,185 - PfGW456L13_855 0.67 -0.3 962,185 - PfGW456L13_855 0.67 +0.1 962,185 - PfGW456L13_855 0.67 +0.0 962,185 - PfGW456L13_855 0.67 -0.0 962,185 - PfGW456L13_855 0.67 -0.4 962,185 - PfGW456L13_855 0.67 +0.2 962,185 - PfGW456L13_855 0.67 -0.4 962,185 - PfGW456L13_855 0.67 -0.6 962,185 - PfGW456L13_855 0.67 +0.2 962,185 - PfGW456L13_855 0.67 -0.3
Or see this region's nucleotide sequence