Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_750 and PfGW456L13_751 are separated by 69 nucleotides PfGW456L13_751 and PfGW456L13_752 are separated by 362 nucleotides
PfGW456L13_750 - Aldose 1-epimerase, at 853,242 to 854,141
_750
PfGW456L13_751 - cytosolic long-chain acyl-CoA thioester hydrolase family protein, at 854,211 to 854,615
_751
PfGW456L13_752 - L-Proline/Glycine betaine transporter ProP, at 854,978 to 856,276
_752
Position (kb) 854
855 Strain fitness (log2 ratio) -2
-1
0
1
2 at 853.222 kb on + strand at 853.223 kb on - strand at 853.223 kb on - strand at 853.244 kb on - strand at 853.244 kb on - strand at 853.244 kb on - strand at 853.277 kb on + strand at 853.498 kb on + strand, within PfGW456L13_750 at 853.498 kb on + strand, within PfGW456L13_750 at 853.498 kb on + strand, within PfGW456L13_750 at 853.499 kb on - strand, within PfGW456L13_750 at 853.499 kb on - strand, within PfGW456L13_750 at 853.499 kb on - strand, within PfGW456L13_750 at 853.499 kb on - strand, within PfGW456L13_750 at 853.499 kb on - strand, within PfGW456L13_750 at 853.499 kb on - strand, within PfGW456L13_750 at 853.499 kb on - strand, within PfGW456L13_750 at 853.499 kb on - strand, within PfGW456L13_750 at 853.520 kb on + strand, within PfGW456L13_750 at 853.560 kb on - strand, within PfGW456L13_750 at 853.576 kb on + strand, within PfGW456L13_750 at 853.577 kb on - strand, within PfGW456L13_750 at 853.577 kb on - strand, within PfGW456L13_750 at 853.577 kb on - strand, within PfGW456L13_750 at 853.633 kb on + strand, within PfGW456L13_750 at 853.633 kb on + strand, within PfGW456L13_750 at 853.633 kb on + strand, within PfGW456L13_750 at 853.633 kb on + strand, within PfGW456L13_750 at 853.634 kb on - strand, within PfGW456L13_750 at 853.634 kb on - strand, within PfGW456L13_750 at 853.634 kb on - strand, within PfGW456L13_750 at 853.634 kb on - strand, within PfGW456L13_750 at 853.680 kb on - strand, within PfGW456L13_750 at 853.774 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 854.029 kb on + strand, within PfGW456L13_750 at 854.029 kb on + strand, within PfGW456L13_750 at 854.029 kb on + strand, within PfGW456L13_750 at 854.065 kb on - strand at 854.065 kb on - strand at 854.065 kb on - strand at 854.115 kb on + strand at 854.116 kb on - strand at 854.173 kb on + strand at 854.200 kb on + strand at 854.201 kb on - strand at 854.286 kb on + strand, within PfGW456L13_751 at 854.286 kb on + strand, within PfGW456L13_751 at 854.291 kb on + strand, within PfGW456L13_751 at 854.375 kb on + strand, within PfGW456L13_751 at 854.376 kb on - strand, within PfGW456L13_751 at 854.377 kb on + strand, within PfGW456L13_751 at 854.377 kb on + strand, within PfGW456L13_751 at 854.378 kb on - strand, within PfGW456L13_751 at 854.566 kb on - strand, within PfGW456L13_751 at 854.566 kb on - strand, within PfGW456L13_751 at 854.610 kb on + strand at 854.610 kb on + strand at 854.611 kb on - strand at 854.611 kb on - strand at 854.611 kb on - strand at 854.650 kb on + strand at 854.650 kb on + strand at 854.651 kb on - strand at 854.651 kb on - strand at 854.651 kb on - strand at 854.651 kb on - strand at 854.698 kb on + strand at 854.698 kb on + strand at 854.698 kb on + strand at 854.698 kb on + strand at 854.698 kb on + strand at 854.698 kb on + strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.701 kb on + strand at 854.701 kb on + strand at 854.701 kb on + strand at 854.701 kb on + strand at 854.701 kb on + strand at 854.701 kb on + strand at 854.701 kb on + strand at 854.702 kb on - strand at 854.702 kb on - strand at 854.702 kb on - strand at 854.702 kb on - strand at 854.702 kb on - strand at 854.702 kb on - strand at 854.702 kb on - strand at 854.702 kb on - strand at 854.756 kb on - strand at 854.756 kb on - strand at 854.756 kb on - strand at 854.814 kb on + strand at 854.814 kb on + strand at 854.814 kb on + strand at 854.814 kb on + strand at 854.815 kb on - strand at 854.815 kb on - strand at 854.815 kb on - strand at 854.815 kb on - strand at 854.815 kb on - strand at 854.816 kb on + strand at 854.817 kb on - strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.880 kb on - strand at 854.880 kb on - strand at 854.880 kb on - strand at 854.880 kb on - strand at 854.880 kb on - strand at 854.880 kb on - strand at 854.880 kb on - strand at 854.880 kb on - strand at 854.880 kb on - strand at 854.880 kb on - strand at 854.960 kb on - strand at 854.961 kb on + strand at 854.961 kb on + strand at 854.962 kb on - strand at 854.962 kb on - strand at 854.962 kb on - strand at 854.962 kb on - strand at 854.962 kb on - strand at 854.962 kb on - strand at 854.962 kb on - strand at 854.962 kb on - strand at 855.044 kb on + strand at 855.044 kb on + strand at 855.044 kb on + strand at 855.045 kb on - strand at 855.045 kb on - strand at 855.045 kb on - strand at 855.045 kb on - strand at 855.054 kb on + strand at 855.055 kb on - strand at 855.055 kb on - strand at 855.165 kb on + strand, within PfGW456L13_752 at 855.166 kb on - strand, within PfGW456L13_752 at 855.332 kb on + strand, within PfGW456L13_752 at 855.333 kb on - strand, within PfGW456L13_752 at 855.464 kb on + strand, within PfGW456L13_752 at 855.465 kb on - strand, within PfGW456L13_752 at 855.541 kb on + strand, within PfGW456L13_752 at 855.541 kb on + strand, within PfGW456L13_752 at 855.541 kb on + strand, within PfGW456L13_752 at 855.541 kb on + strand, within PfGW456L13_752 at 855.541 kb on + strand, within PfGW456L13_752 at 855.541 kb on + strand, within PfGW456L13_752 at 855.541 kb on + strand, within PfGW456L13_752 at 855.542 kb on - strand, within PfGW456L13_752 at 855.542 kb on - strand, within PfGW456L13_752 at 855.542 kb on - strand, within PfGW456L13_752 at 855.542 kb on - strand, within PfGW456L13_752 at 855.542 kb on - strand, within PfGW456L13_752 at 855.542 kb on - strand, within PfGW456L13_752 at 855.542 kb on - strand, within PfGW456L13_752 at 855.542 kb on - strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.569 kb on + strand, within PfGW456L13_752 at 855.570 kb on - strand, within PfGW456L13_752
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 853,222 + -1.0 853,223 - -0.9 853,223 - +0.6 853,244 - +0.7 853,244 - +0.9 853,244 - -0.4 853,277 + -0.4 853,498 + PfGW456L13_750 0.28 +0.5 853,498 + PfGW456L13_750 0.28 -1.0 853,498 + PfGW456L13_750 0.28 +0.2 853,499 - PfGW456L13_750 0.29 -0.8 853,499 - PfGW456L13_750 0.29 -0.3 853,499 - PfGW456L13_750 0.29 +0.2 853,499 - PfGW456L13_750 0.29 -0.7 853,499 - PfGW456L13_750 0.29 -0.1 853,499 - PfGW456L13_750 0.29 -1.1 853,499 - PfGW456L13_750 0.29 -0.2 853,499 - PfGW456L13_750 0.29 -0.3 853,520 + PfGW456L13_750 0.31 -0.7 853,560 - PfGW456L13_750 0.35 +0.5 853,576 + PfGW456L13_750 0.37 -0.2 853,577 - PfGW456L13_750 0.37 +0.3 853,577 - PfGW456L13_750 0.37 -0.0 853,577 - PfGW456L13_750 0.37 +0.5 853,633 + PfGW456L13_750 0.43 -0.7 853,633 + PfGW456L13_750 0.43 +0.5 853,633 + PfGW456L13_750 0.43 +0.6 853,633 + PfGW456L13_750 0.43 +0.6 853,634 - PfGW456L13_750 0.44 +0.2 853,634 - PfGW456L13_750 0.44 -0.2 853,634 - PfGW456L13_750 0.44 -0.2 853,634 - PfGW456L13_750 0.44 +0.1 853,680 - PfGW456L13_750 0.49 +0.4 853,774 + PfGW456L13_750 0.59 -0.1 853,959 + PfGW456L13_750 0.80 +0.8 853,959 + PfGW456L13_750 0.80 -0.9 853,959 + PfGW456L13_750 0.80 -0.2 853,959 + PfGW456L13_750 0.80 -0.9 853,959 + PfGW456L13_750 0.80 +0.3 853,959 + PfGW456L13_750 0.80 +0.3 853,959 + PfGW456L13_750 0.80 -1.6 853,959 + PfGW456L13_750 0.80 -0.9 853,959 + PfGW456L13_750 0.80 -0.6 853,959 + PfGW456L13_750 0.80 -1.6 853,959 + PfGW456L13_750 0.80 +1.2 853,959 + PfGW456L13_750 0.80 -1.7 853,959 + PfGW456L13_750 0.80 -0.3 853,959 + PfGW456L13_750 0.80 -0.8 853,959 + PfGW456L13_750 0.80 -0.4 853,960 - PfGW456L13_750 0.80 -0.5 853,960 - PfGW456L13_750 0.80 -1.4 853,960 - PfGW456L13_750 0.80 -0.2 853,960 - PfGW456L13_750 0.80 -0.5 853,960 - PfGW456L13_750 0.80 +0.3 853,960 - PfGW456L13_750 0.80 +0.3 853,960 - PfGW456L13_750 0.80 -1.5 853,960 - PfGW456L13_750 0.80 -0.3 853,960 - PfGW456L13_750 0.80 -0.1 853,960 - PfGW456L13_750 0.80 +0.6 853,960 - PfGW456L13_750 0.80 -2.6 853,960 - PfGW456L13_750 0.80 -0.3 853,960 - PfGW456L13_750 0.80 +0.2 853,960 - PfGW456L13_750 0.80 -0.8 854,029 + PfGW456L13_750 0.87 +0.1 854,029 + PfGW456L13_750 0.87 -1.5 854,029 + PfGW456L13_750 0.87 -1.0 854,065 - -0.1 854,065 - +1.2 854,065 - +1.2 854,115 + -1.2 854,116 - -0.6 854,173 + -1.3 854,200 + -0.3 854,201 - -0.1 854,286 + PfGW456L13_751 0.19 -1.3 854,286 + PfGW456L13_751 0.19 -1.5 854,291 + PfGW456L13_751 0.20 -0.4 854,375 + PfGW456L13_751 0.40 +0.4 854,376 - PfGW456L13_751 0.41 -1.6 854,377 + PfGW456L13_751 0.41 +0.2 854,377 + PfGW456L13_751 0.41 -1.0 854,378 - PfGW456L13_751 0.41 +0.1 854,566 - PfGW456L13_751 0.88 -1.0 854,566 - PfGW456L13_751 0.88 -1.9 854,610 + -1.5 854,610 + +0.9 854,611 - -0.8 854,611 - -0.9 854,611 - +0.6 854,650 + -2.6 854,650 + -0.5 854,651 - +0.4 854,651 - +0.9 854,651 - +1.0 854,651 - -1.2 854,698 + -0.2 854,698 + -1.7 854,698 + -1.9 854,698 + -0.9 854,698 + -0.9 854,698 + +0.5 854,699 - +0.5 854,699 - +1.0 854,699 - +1.1 854,699 - +1.6 854,699 - +0.9 854,699 - +0.9 854,699 - +0.8 854,699 - +0.6 854,699 - -0.1 854,699 - +1.5 854,699 - +0.9 854,701 + +0.7 854,701 + -1.2 854,701 + -1.3 854,701 + -2.1 854,701 + -1.2 854,701 + -1.5 854,701 + -0.8 854,702 - -0.5 854,702 - +0.5 854,702 - -0.5 854,702 - -0.0 854,702 - +0.2 854,702 - +0.5 854,702 - +0.6 854,702 - +1.1 854,756 - +0.6 854,756 - +0.7 854,756 - +0.9 854,814 + -2.0 854,814 + +1.2 854,814 + +0.5 854,814 + -0.8 854,815 - +1.0 854,815 - +0.4 854,815 - +1.6 854,815 - +0.6 854,815 - +0.7 854,816 + -1.4 854,817 - +1.5 854,879 + -0.4 854,879 + -0.0 854,879 + +0.3 854,879 + -0.5 854,879 + -0.6 854,879 + +0.1 854,879 + +1.1 854,879 + -0.6 854,879 + -2.2 854,879 + +1.2 854,879 + -1.9 854,879 + -0.2 854,879 + -0.8 854,880 - +0.3 854,880 - +1.3 854,880 - +0.6 854,880 - +1.1 854,880 - +1.6 854,880 - +1.2 854,880 - -0.0 854,880 - +0.6 854,880 - +1.4 854,880 - +0.8 854,960 - +0.3 854,961 + +0.6 854,961 + -1.6 854,962 - +0.9 854,962 - +0.4 854,962 - -0.4 854,962 - +0.4 854,962 - +2.4 854,962 - +1.8 854,962 - +0.3 854,962 - +0.3 855,044 + -0.2 855,044 + +0.3 855,044 + -1.2 855,045 - +1.0 855,045 - +1.5 855,045 - +1.5 855,045 - -0.4 855,054 + -0.3 855,055 - +0.5 855,055 - +1.1 855,165 + PfGW456L13_752 0.14 -0.5 855,166 - PfGW456L13_752 0.14 +0.5 855,332 + PfGW456L13_752 0.27 +0.5 855,333 - PfGW456L13_752 0.27 -0.0 855,464 + PfGW456L13_752 0.37 +0.2 855,465 - PfGW456L13_752 0.37 +0.4 855,541 + PfGW456L13_752 0.43 -0.0 855,541 + PfGW456L13_752 0.43 +0.5 855,541 + PfGW456L13_752 0.43 +0.8 855,541 + PfGW456L13_752 0.43 +0.6 855,541 + PfGW456L13_752 0.43 -0.6 855,541 + PfGW456L13_752 0.43 -1.4 855,541 + PfGW456L13_752 0.43 -2.0 855,542 - PfGW456L13_752 0.43 +0.0 855,542 - PfGW456L13_752 0.43 -0.1 855,542 - PfGW456L13_752 0.43 +1.2 855,542 - PfGW456L13_752 0.43 +0.5 855,542 - PfGW456L13_752 0.43 +0.4 855,542 - PfGW456L13_752 0.43 +0.6 855,542 - PfGW456L13_752 0.43 +0.8 855,542 - PfGW456L13_752 0.43 +0.1 855,545 + PfGW456L13_752 0.44 -0.1 855,545 + PfGW456L13_752 0.44 +0.3 855,545 + PfGW456L13_752 0.44 +0.0 855,545 + PfGW456L13_752 0.44 +1.1 855,545 + PfGW456L13_752 0.44 -0.4 855,545 + PfGW456L13_752 0.44 -0.2 855,545 + PfGW456L13_752 0.44 +0.0 855,545 + PfGW456L13_752 0.44 +0.1 855,545 + PfGW456L13_752 0.44 -0.0 855,545 + PfGW456L13_752 0.44 +0.3 855,546 - PfGW456L13_752 0.44 -0.8 855,546 - PfGW456L13_752 0.44 -0.4 855,546 - PfGW456L13_752 0.44 +0.0 855,546 - PfGW456L13_752 0.44 +0.2 855,546 - PfGW456L13_752 0.44 +0.5 855,546 - PfGW456L13_752 0.44 +1.5 855,546 - PfGW456L13_752 0.44 +1.5 855,546 - PfGW456L13_752 0.44 +0.7 855,546 - PfGW456L13_752 0.44 +0.8 855,546 - PfGW456L13_752 0.44 +0.3 855,546 - PfGW456L13_752 0.44 +0.6 855,546 - PfGW456L13_752 0.44 +0.3 855,546 - PfGW456L13_752 0.44 -0.1 855,569 + PfGW456L13_752 0.45 +0.3 855,570 - PfGW456L13_752 0.46 +1.2
Or see this region's nucleotide sequence