Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_5062 and PfGW456L13_5063 are separated by 20 nucleotides PfGW456L13_5063 and PfGW456L13_5064 are separated by 12 nucleotides PfGW456L13_5064 and PfGW456L13_5065 overlap by 4 nucleotides
PfGW456L13_5062 - L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1), at 5,643,847 to 5,644,563
_5062
PfGW456L13_5063 - L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation, at 5,644,584 to 5,645,477
_5063
PfGW456L13_5064 - L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1), at 5,645,490 to 5,646,143
_5064
PfGW456L13_5065 - L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1), at 5,646,140 to 5,647,297
_5065
Position (kb) 5645
5646
5647 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5644.561 kb on + strand at 5644.562 kb on - strand at 5644.562 kb on - strand at 5644.603 kb on + strand at 5644.603 kb on + strand at 5644.603 kb on + strand at 5644.604 kb on - strand at 5644.604 kb on - strand at 5644.606 kb on + strand at 5644.606 kb on + strand at 5644.607 kb on - strand at 5644.607 kb on - strand at 5644.720 kb on - strand, within PfGW456L13_5063 at 5644.720 kb on - strand, within PfGW456L13_5063 at 5644.720 kb on - strand, within PfGW456L13_5063 at 5644.737 kb on + strand, within PfGW456L13_5063 at 5644.821 kb on + strand, within PfGW456L13_5063 at 5644.821 kb on + strand, within PfGW456L13_5063 at 5644.821 kb on + strand, within PfGW456L13_5063 at 5644.821 kb on + strand, within PfGW456L13_5063 at 5644.822 kb on - strand, within PfGW456L13_5063 at 5644.822 kb on - strand, within PfGW456L13_5063 at 5644.845 kb on + strand, within PfGW456L13_5063 at 5644.846 kb on - strand, within PfGW456L13_5063 at 5644.846 kb on - strand, within PfGW456L13_5063 at 5644.885 kb on - strand, within PfGW456L13_5063 at 5644.885 kb on - strand, within PfGW456L13_5063 at 5644.885 kb on - strand, within PfGW456L13_5063 at 5644.895 kb on - strand, within PfGW456L13_5063 at 5644.895 kb on - strand, within PfGW456L13_5063 at 5644.956 kb on + strand, within PfGW456L13_5063 at 5644.956 kb on + strand, within PfGW456L13_5063 at 5644.956 kb on + strand, within PfGW456L13_5063 at 5644.956 kb on + strand, within PfGW456L13_5063 at 5644.956 kb on + strand, within PfGW456L13_5063 at 5644.956 kb on + strand, within PfGW456L13_5063 at 5644.957 kb on - strand, within PfGW456L13_5063 at 5644.957 kb on - strand, within PfGW456L13_5063 at 5644.957 kb on - strand, within PfGW456L13_5063 at 5644.957 kb on - strand, within PfGW456L13_5063 at 5644.957 kb on - strand, within PfGW456L13_5063 at 5644.957 kb on - strand, within PfGW456L13_5063 at 5644.957 kb on - strand, within PfGW456L13_5063 at 5644.957 kb on - strand, within PfGW456L13_5063 at 5645.122 kb on - strand, within PfGW456L13_5063 at 5645.122 kb on - strand, within PfGW456L13_5063 at 5645.122 kb on - strand, within PfGW456L13_5063 at 5645.175 kb on + strand, within PfGW456L13_5063 at 5645.176 kb on - strand, within PfGW456L13_5063 at 5645.176 kb on - strand, within PfGW456L13_5063 at 5645.176 kb on - strand, within PfGW456L13_5063 at 5645.177 kb on + strand, within PfGW456L13_5063 at 5645.217 kb on + strand, within PfGW456L13_5063 at 5645.218 kb on - strand, within PfGW456L13_5063 at 5645.218 kb on - strand, within PfGW456L13_5063 at 5645.277 kb on + strand, within PfGW456L13_5063 at 5645.277 kb on + strand, within PfGW456L13_5063 at 5645.277 kb on + strand, within PfGW456L13_5063 at 5645.278 kb on - strand, within PfGW456L13_5063 at 5645.278 kb on - strand, within PfGW456L13_5063 at 5645.278 kb on - strand, within PfGW456L13_5063 at 5645.278 kb on - strand, within PfGW456L13_5063 at 5645.278 kb on - strand, within PfGW456L13_5063 at 5645.278 kb on - strand, within PfGW456L13_5063 at 5645.278 kb on - strand, within PfGW456L13_5063 at 5645.289 kb on + strand, within PfGW456L13_5063 at 5645.289 kb on + strand, within PfGW456L13_5063 at 5645.289 kb on + strand, within PfGW456L13_5063 at 5645.290 kb on - strand, within PfGW456L13_5063 at 5645.475 kb on + strand at 5645.476 kb on - strand at 5645.719 kb on - strand, within PfGW456L13_5064 at 5645.719 kb on - strand, within PfGW456L13_5064 at 5645.719 kb on - strand, within PfGW456L13_5064 at 5645.775 kb on + strand, within PfGW456L13_5064 at 5645.799 kb on - strand, within PfGW456L13_5064 at 5645.805 kb on + strand, within PfGW456L13_5064 at 5645.806 kb on - strand, within PfGW456L13_5064 at 5645.806 kb on - strand, within PfGW456L13_5064 at 5645.897 kb on - strand, within PfGW456L13_5064 at 5646.001 kb on + strand, within PfGW456L13_5064 at 5646.001 kb on + strand, within PfGW456L13_5064 at 5646.002 kb on - strand, within PfGW456L13_5064 at 5646.002 kb on - strand, within PfGW456L13_5064 at 5646.058 kb on + strand, within PfGW456L13_5064 at 5646.059 kb on - strand, within PfGW456L13_5064 at 5646.059 kb on - strand, within PfGW456L13_5064 at 5646.386 kb on + strand, within PfGW456L13_5065 at 5646.387 kb on - strand, within PfGW456L13_5065 at 5646.533 kb on + strand, within PfGW456L13_5065 at 5646.533 kb on + strand, within PfGW456L13_5065 at 5646.533 kb on + strand, within PfGW456L13_5065 at 5646.533 kb on + strand, within PfGW456L13_5065 at 5646.534 kb on - strand, within PfGW456L13_5065 at 5646.534 kb on - strand, within PfGW456L13_5065 at 5646.534 kb on - strand, within PfGW456L13_5065 at 5646.621 kb on + strand, within PfGW456L13_5065 at 5646.621 kb on + strand, within PfGW456L13_5065 at 5646.621 kb on + strand, within PfGW456L13_5065 at 5646.621 kb on + strand, within PfGW456L13_5065 at 5646.622 kb on - strand, within PfGW456L13_5065 at 5646.622 kb on - strand, within PfGW456L13_5065 at 5646.622 kb on - strand, within PfGW456L13_5065 at 5646.622 kb on - strand, within PfGW456L13_5065 at 5646.624 kb on + strand, within PfGW456L13_5065 at 5646.624 kb on + strand, within PfGW456L13_5065 at 5646.624 kb on + strand, within PfGW456L13_5065 at 5646.625 kb on - strand, within PfGW456L13_5065 at 5646.941 kb on - strand, within PfGW456L13_5065 at 5646.989 kb on + strand, within PfGW456L13_5065 at 5646.990 kb on - strand, within PfGW456L13_5065 at 5646.990 kb on - strand, within PfGW456L13_5065 at 5646.990 kb on - strand, within PfGW456L13_5065 at 5646.990 kb on - strand, within PfGW456L13_5065 at 5646.990 kb on - strand, within PfGW456L13_5065 at 5647.016 kb on - strand at 5647.016 kb on - strand, within PfGW456L13_5065 at 5647.016 kb on - strand, within PfGW456L13_5065 at 5647.028 kb on + strand, within PfGW456L13_5065 at 5647.028 kb on + strand, within PfGW456L13_5065 at 5647.028 kb on + strand, within PfGW456L13_5065 at 5647.029 kb on - strand, within PfGW456L13_5065 at 5647.029 kb on - strand, within PfGW456L13_5065 at 5647.029 kb on - strand, within PfGW456L13_5065 at 5647.029 kb on - strand, within PfGW456L13_5065 at 5647.032 kb on + strand, within PfGW456L13_5065 at 5647.032 kb on + strand, within PfGW456L13_5065 at 5647.032 kb on + strand, within PfGW456L13_5065 at 5647.032 kb on + strand, within PfGW456L13_5065 at 5647.032 kb on + strand, within PfGW456L13_5065 at 5647.032 kb on + strand, within PfGW456L13_5065 at 5647.033 kb on - strand, within PfGW456L13_5065 at 5647.033 kb on - strand, within PfGW456L13_5065 at 5647.033 kb on - strand, within PfGW456L13_5065 at 5647.033 kb on - strand, within PfGW456L13_5065 at 5647.033 kb on - strand, within PfGW456L13_5065 at 5647.033 kb on - strand, within PfGW456L13_5065 at 5647.033 kb on - strand, within PfGW456L13_5065 at 5647.076 kb on + strand, within PfGW456L13_5065 at 5647.076 kb on + strand, within PfGW456L13_5065 at 5647.107 kb on - strand, within PfGW456L13_5065 at 5647.142 kb on + strand, within PfGW456L13_5065 at 5647.142 kb on + strand, within PfGW456L13_5065 at 5647.142 kb on + strand, within PfGW456L13_5065 at 5647.142 kb on + strand, within PfGW456L13_5065 at 5647.143 kb on - strand, within PfGW456L13_5065 at 5647.143 kb on - strand, within PfGW456L13_5065 at 5647.143 kb on - strand, within PfGW456L13_5065 at 5647.143 kb on - strand, within PfGW456L13_5065 at 5647.143 kb on - strand, within PfGW456L13_5065 at 5647.143 kb on - strand, within PfGW456L13_5065
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 5,644,561 + +0.3 5,644,562 - -0.6 5,644,562 - -0.3 5,644,603 + -2.3 5,644,603 + -0.7 5,644,603 + +0.3 5,644,604 - +0.1 5,644,604 - -0.8 5,644,606 + -2.2 5,644,606 + -1.5 5,644,607 - -0.6 5,644,607 - -0.3 5,644,720 - PfGW456L13_5063 0.15 -0.5 5,644,720 - PfGW456L13_5063 0.15 -0.6 5,644,720 - PfGW456L13_5063 0.15 -1.2 5,644,737 + PfGW456L13_5063 0.17 -0.9 5,644,821 + PfGW456L13_5063 0.27 -0.2 5,644,821 + PfGW456L13_5063 0.27 -1.1 5,644,821 + PfGW456L13_5063 0.27 -0.7 5,644,821 + PfGW456L13_5063 0.27 -2.2 5,644,822 - PfGW456L13_5063 0.27 -0.7 5,644,822 - PfGW456L13_5063 0.27 -1.4 5,644,845 + PfGW456L13_5063 0.29 +0.1 5,644,846 - PfGW456L13_5063 0.29 +1.8 5,644,846 - PfGW456L13_5063 0.29 -2.5 5,644,885 - PfGW456L13_5063 0.34 -0.8 5,644,885 - PfGW456L13_5063 0.34 -1.0 5,644,885 - PfGW456L13_5063 0.34 -0.2 5,644,895 - PfGW456L13_5063 0.35 -0.5 5,644,895 - PfGW456L13_5063 0.35 -0.9 5,644,956 + PfGW456L13_5063 0.42 -1.6 5,644,956 + PfGW456L13_5063 0.42 -0.3 5,644,956 + PfGW456L13_5063 0.42 -1.3 5,644,956 + PfGW456L13_5063 0.42 -0.6 5,644,956 + PfGW456L13_5063 0.42 -1.4 5,644,956 + PfGW456L13_5063 0.42 +0.7 5,644,957 - PfGW456L13_5063 0.42 -1.2 5,644,957 - PfGW456L13_5063 0.42 -0.8 5,644,957 - PfGW456L13_5063 0.42 -2.0 5,644,957 - PfGW456L13_5063 0.42 -0.4 5,644,957 - PfGW456L13_5063 0.42 -1.2 5,644,957 - PfGW456L13_5063 0.42 -0.5 5,644,957 - PfGW456L13_5063 0.42 -0.4 5,644,957 - PfGW456L13_5063 0.42 -1.3 5,645,122 - PfGW456L13_5063 0.60 -0.8 5,645,122 - PfGW456L13_5063 0.60 +0.1 5,645,122 - PfGW456L13_5063 0.60 -1.2 5,645,175 + PfGW456L13_5063 0.66 -1.2 5,645,176 - PfGW456L13_5063 0.66 +0.1 5,645,176 - PfGW456L13_5063 0.66 -0.7 5,645,176 - PfGW456L13_5063 0.66 -0.3 5,645,177 + PfGW456L13_5063 0.66 -1.1 5,645,217 + PfGW456L13_5063 0.71 -0.4 5,645,218 - PfGW456L13_5063 0.71 +0.4 5,645,218 - PfGW456L13_5063 0.71 -1.1 5,645,277 + PfGW456L13_5063 0.78 -2.2 5,645,277 + PfGW456L13_5063 0.78 +0.5 5,645,277 + PfGW456L13_5063 0.78 -1.3 5,645,278 - PfGW456L13_5063 0.78 -0.5 5,645,278 - PfGW456L13_5063 0.78 -1.0 5,645,278 - PfGW456L13_5063 0.78 -0.3 5,645,278 - PfGW456L13_5063 0.78 -0.6 5,645,278 - PfGW456L13_5063 0.78 -1.8 5,645,278 - PfGW456L13_5063 0.78 -1.1 5,645,278 - PfGW456L13_5063 0.78 -0.7 5,645,289 + PfGW456L13_5063 0.79 -0.6 5,645,289 + PfGW456L13_5063 0.79 -0.5 5,645,289 + PfGW456L13_5063 0.79 -1.7 5,645,290 - PfGW456L13_5063 0.79 -1.2 5,645,475 + +0.1 5,645,476 - +0.7 5,645,719 - PfGW456L13_5064 0.35 -0.8 5,645,719 - PfGW456L13_5064 0.35 -0.3 5,645,719 - PfGW456L13_5064 0.35 -0.8 5,645,775 + PfGW456L13_5064 0.44 -1.2 5,645,799 - PfGW456L13_5064 0.47 +0.3 5,645,805 + PfGW456L13_5064 0.48 -1.5 5,645,806 - PfGW456L13_5064 0.48 -1.4 5,645,806 - PfGW456L13_5064 0.48 -0.1 5,645,897 - PfGW456L13_5064 0.62 -0.4 5,646,001 + PfGW456L13_5064 0.78 -1.4 5,646,001 + PfGW456L13_5064 0.78 -0.2 5,646,002 - PfGW456L13_5064 0.78 -0.5 5,646,002 - PfGW456L13_5064 0.78 -2.8 5,646,058 + PfGW456L13_5064 0.87 -0.6 5,646,059 - PfGW456L13_5064 0.87 -2.2 5,646,059 - PfGW456L13_5064 0.87 -0.4 5,646,386 + PfGW456L13_5065 0.21 -0.5 5,646,387 - PfGW456L13_5065 0.21 +0.4 5,646,533 + PfGW456L13_5065 0.34 -0.6 5,646,533 + PfGW456L13_5065 0.34 -1.1 5,646,533 + PfGW456L13_5065 0.34 -0.7 5,646,533 + PfGW456L13_5065 0.34 -0.4 5,646,534 - PfGW456L13_5065 0.34 -0.5 5,646,534 - PfGW456L13_5065 0.34 -0.7 5,646,534 - PfGW456L13_5065 0.34 -0.1 5,646,621 + PfGW456L13_5065 0.42 +0.1 5,646,621 + PfGW456L13_5065 0.42 -1.5 5,646,621 + PfGW456L13_5065 0.42 +0.5 5,646,621 + PfGW456L13_5065 0.42 -3.4 5,646,622 - PfGW456L13_5065 0.42 -0.1 5,646,622 - PfGW456L13_5065 0.42 -0.5 5,646,622 - PfGW456L13_5065 0.42 +0.4 5,646,622 - PfGW456L13_5065 0.42 -0.9 5,646,624 + PfGW456L13_5065 0.42 +0.3 5,646,624 + PfGW456L13_5065 0.42 -0.7 5,646,624 + PfGW456L13_5065 0.42 -0.3 5,646,625 - PfGW456L13_5065 0.42 -0.7 5,646,941 - PfGW456L13_5065 0.69 -2.6 5,646,989 + PfGW456L13_5065 0.73 -0.9 5,646,990 - PfGW456L13_5065 0.73 -1.0 5,646,990 - PfGW456L13_5065 0.73 -0.1 5,646,990 - PfGW456L13_5065 0.73 -1.4 5,646,990 - PfGW456L13_5065 0.73 +0.8 5,646,990 - PfGW456L13_5065 0.73 -1.6 5,647,016 - -0.5 5,647,016 - PfGW456L13_5065 0.76 -1.2 5,647,016 - PfGW456L13_5065 0.76 -0.9 5,647,028 + PfGW456L13_5065 0.77 -0.6 5,647,028 + PfGW456L13_5065 0.77 -0.7 5,647,028 + PfGW456L13_5065 0.77 -0.4 5,647,029 - PfGW456L13_5065 0.77 -0.3 5,647,029 - PfGW456L13_5065 0.77 -2.4 5,647,029 - PfGW456L13_5065 0.77 -0.9 5,647,029 - PfGW456L13_5065 0.77 -0.5 5,647,032 + PfGW456L13_5065 0.77 -1.5 5,647,032 + PfGW456L13_5065 0.77 -0.1 5,647,032 + PfGW456L13_5065 0.77 -0.8 5,647,032 + PfGW456L13_5065 0.77 -2.5 5,647,032 + PfGW456L13_5065 0.77 -0.7 5,647,032 + PfGW456L13_5065 0.77 -0.9 5,647,033 - PfGW456L13_5065 0.77 -1.3 5,647,033 - PfGW456L13_5065 0.77 -0.5 5,647,033 - PfGW456L13_5065 0.77 -2.0 5,647,033 - PfGW456L13_5065 0.77 -1.4 5,647,033 - PfGW456L13_5065 0.77 -1.1 5,647,033 - PfGW456L13_5065 0.77 +0.3 5,647,033 - PfGW456L13_5065 0.77 +0.5 5,647,076 + PfGW456L13_5065 0.81 -0.8 5,647,076 + PfGW456L13_5065 0.81 -1.2 5,647,107 - PfGW456L13_5065 0.84 -0.6 5,647,142 + PfGW456L13_5065 0.87 -0.3 5,647,142 + PfGW456L13_5065 0.87 +0.5 5,647,142 + PfGW456L13_5065 0.87 -0.7 5,647,142 + PfGW456L13_5065 0.87 -0.6 5,647,143 - PfGW456L13_5065 0.87 -0.8 5,647,143 - PfGW456L13_5065 0.87 -0.3 5,647,143 - PfGW456L13_5065 0.87 +0.2 5,647,143 - PfGW456L13_5065 0.87 -3.0 5,647,143 - PfGW456L13_5065 0.87 +0.8 5,647,143 - PfGW456L13_5065 0.87 -1.6
Or see this region's nucleotide sequence