Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_491

Experiment: nitrate 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_490 and PfGW456L13_491 are separated by 146 nucleotidesPfGW456L13_491 and PfGW456L13_492 are separated by 202 nucleotides PfGW456L13_490 - GGDEF domain protein, at 559,571 to 561,490 _490 PfGW456L13_491 - Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1), at 561,637 to 562,821 _491 PfGW456L13_492 - Sensory box/GGDEF family protein, at 563,024 to 564,013 _492 Position (kb) 561 562 563Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 560.702 kb on - strand, within PfGW456L13_490at 560.702 kb on - strand, within PfGW456L13_490at 560.702 kb on - strand, within PfGW456L13_490at 560.919 kb on + strand, within PfGW456L13_490at 560.919 kb on + strand, within PfGW456L13_490at 560.919 kb on + strand, within PfGW456L13_490at 560.919 kb on + strand, within PfGW456L13_490at 560.920 kb on - strand, within PfGW456L13_490at 560.976 kb on + strand, within PfGW456L13_490at 561.057 kb on + strand, within PfGW456L13_490at 561.057 kb on + strand, within PfGW456L13_490at 561.058 kb on - strand, within PfGW456L13_490at 561.345 kb on + strandat 561.345 kb on + strandat 561.345 kb on + strandat 561.401 kb on + strandat 561.408 kb on + strandat 561.447 kb on + strandat 561.447 kb on + strandat 561.447 kb on + strandat 561.447 kb on + strandat 561.447 kb on + strandat 561.447 kb on + strandat 561.448 kb on - strandat 561.477 kb on + strandat 561.478 kb on - strandat 561.478 kb on - strandat 561.526 kb on - strandat 561.526 kb on - strandat 561.528 kb on - strandat 561.532 kb on + strandat 561.532 kb on + strandat 561.533 kb on - strandat 561.554 kb on + strandat 561.554 kb on + strandat 561.555 kb on - strandat 561.555 kb on - strandat 561.555 kb on - strandat 561.555 kb on - strandat 561.555 kb on - strandat 561.588 kb on + strandat 561.589 kb on - strandat 561.589 kb on - strandat 561.589 kb on - strandat 561.589 kb on - strandat 561.595 kb on - strandat 561.630 kb on - strandat 561.636 kb on + strandat 561.636 kb on + strandat 561.636 kb on + strandat 561.637 kb on - strandat 561.637 kb on - strandat 561.637 kb on - strandat 561.637 kb on - strandat 561.637 kb on - strandat 561.637 kb on - strandat 561.644 kb on - strandat 561.644 kb on - strandat 561.730 kb on + strandat 561.731 kb on - strandat 561.731 kb on - strandat 561.731 kb on - strandat 561.731 kb on - strandat 561.731 kb on - strandat 561.731 kb on - strandat 561.731 kb on - strandat 561.853 kb on - strand, within PfGW456L13_491at 561.853 kb on - strand, within PfGW456L13_491at 562.025 kb on - strand, within PfGW456L13_491at 562.254 kb on + strand, within PfGW456L13_491at 562.254 kb on + strand, within PfGW456L13_491at 562.255 kb on - strand, within PfGW456L13_491at 562.255 kb on - strand, within PfGW456L13_491at 562.255 kb on - strand, within PfGW456L13_491at 562.255 kb on - strand, within PfGW456L13_491at 562.270 kb on + strand, within PfGW456L13_491at 562.270 kb on + strand, within PfGW456L13_491at 562.270 kb on + strand, within PfGW456L13_491at 562.270 kb on + strand, within PfGW456L13_491at 562.270 kb on + strand, within PfGW456L13_491at 562.271 kb on - strand, within PfGW456L13_491at 562.271 kb on - strand, within PfGW456L13_491at 562.275 kb on + strand, within PfGW456L13_491at 562.275 kb on + strand, within PfGW456L13_491at 562.276 kb on - strand, within PfGW456L13_491at 562.276 kb on - strand, within PfGW456L13_491at 562.469 kb on - strand, within PfGW456L13_491at 562.601 kb on + strand, within PfGW456L13_491at 562.601 kb on + strand, within PfGW456L13_491at 562.601 kb on + strand, within PfGW456L13_491at 562.601 kb on + strand, within PfGW456L13_491at 562.601 kb on + strand, within PfGW456L13_491at 562.601 kb on + strand, within PfGW456L13_491at 562.601 kb on + strand, within PfGW456L13_491at 562.601 kb on + strand, within PfGW456L13_491at 562.601 kb on + strand, within PfGW456L13_491at 562.601 kb on + strand, within PfGW456L13_491at 562.601 kb on + strand, within PfGW456L13_491at 562.601 kb on + strand, within PfGW456L13_491at 562.601 kb on + strand, within PfGW456L13_491at 562.602 kb on - strand, within PfGW456L13_491at 562.602 kb on - strand, within PfGW456L13_491at 562.602 kb on - strand, within PfGW456L13_491at 562.602 kb on - strand, within PfGW456L13_491at 562.602 kb on - strand, within PfGW456L13_491at 562.602 kb on - strand, within PfGW456L13_491at 562.602 kb on - strand, within PfGW456L13_491at 562.602 kb on - strand, within PfGW456L13_491at 562.602 kb on - strand, within PfGW456L13_491at 562.602 kb on - strand, within PfGW456L13_491at 562.602 kb on - strand, within PfGW456L13_491at 562.602 kb on - strand, within PfGW456L13_491at 562.602 kb on - strand, within PfGW456L13_491at 562.602 kb on - strand, within PfGW456L13_491at 562.643 kb on + strand, within PfGW456L13_491at 562.643 kb on + strand, within PfGW456L13_491at 562.643 kb on + strandat 562.643 kb on + strand, within PfGW456L13_491at 562.644 kb on - strand, within PfGW456L13_491at 562.795 kb on + strandat 562.795 kb on + strandat 562.796 kb on - strandat 562.796 kb on - strandat 562.796 kb on - strandat 562.796 kb on - strandat 562.796 kb on - strandat 562.861 kb on + strandat 562.861 kb on + strandat 562.861 kb on + strandat 562.861 kb on + strandat 562.861 kb on + strandat 562.930 kb on + strandat 562.930 kb on + strandat 562.941 kb on - strandat 563.213 kb on + strand, within PfGW456L13_492at 563.214 kb on - strand, within PfGW456L13_492at 563.214 kb on - strand, within PfGW456L13_492at 563.214 kb on - strand, within PfGW456L13_492at 563.229 kb on - strand, within PfGW456L13_492at 563.229 kb on - strand, within PfGW456L13_492at 563.259 kb on + strand, within PfGW456L13_492at 563.259 kb on + strand, within PfGW456L13_492at 563.259 kb on + strand, within PfGW456L13_492at 563.260 kb on - strand, within PfGW456L13_492at 563.260 kb on - strand, within PfGW456L13_492at 563.260 kb on - strand, within PfGW456L13_492at 563.260 kb on - strand, within PfGW456L13_492at 563.261 kb on - strand, within PfGW456L13_492at 563.315 kb on + strand, within PfGW456L13_492at 563.315 kb on + strand, within PfGW456L13_492at 563.315 kb on + strand, within PfGW456L13_492at 563.315 kb on + strand, within PfGW456L13_492at 563.316 kb on - strand, within PfGW456L13_492at 563.316 kb on - strand, within PfGW456L13_492at 563.423 kb on + strand, within PfGW456L13_492at 563.423 kb on + strand, within PfGW456L13_492at 563.423 kb on + strand, within PfGW456L13_492at 563.423 kb on + strand, within PfGW456L13_492at 563.424 kb on - strand, within PfGW456L13_492at 563.424 kb on - strand, within PfGW456L13_492at 563.424 kb on - strand, within PfGW456L13_492at 563.424 kb on - strand, within PfGW456L13_492at 563.424 kb on - strand, within PfGW456L13_492at 563.647 kb on + strand, within PfGW456L13_492at 563.648 kb on - strand, within PfGW456L13_492at 563.672 kb on + strand, within PfGW456L13_492at 563.672 kb on + strand, within PfGW456L13_492at 563.672 kb on + strand, within PfGW456L13_492at 563.672 kb on + strand, within PfGW456L13_492at 563.672 kb on + strand, within PfGW456L13_492at 563.672 kb on + strand, within PfGW456L13_492at 563.672 kb on + strand, within PfGW456L13_492at 563.672 kb on + strand, within PfGW456L13_492at 563.672 kb on + strand, within PfGW456L13_492at 563.672 kb on + strand, within PfGW456L13_492at 563.673 kb on - strand, within PfGW456L13_492at 563.673 kb on - strand, within PfGW456L13_492at 563.673 kb on - strand, within PfGW456L13_492at 563.673 kb on - strand, within PfGW456L13_492at 563.673 kb on - strand, within PfGW456L13_492at 563.673 kb on - strand, within PfGW456L13_492at 563.673 kb on - strand, within PfGW456L13_492at 563.673 kb on - strand, within PfGW456L13_492at 563.673 kb on - strand, within PfGW456L13_492at 563.673 kb on - strand, within PfGW456L13_492at 563.673 kb on - strand, within PfGW456L13_492at 563.673 kb on - strand, within PfGW456L13_492at 563.673 kb on - strand, within PfGW456L13_492at 563.673 kb on - strand, within PfGW456L13_492at 563.673 kb on - strand, within PfGW456L13_492

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
remove
560,702 - PfGW456L13_490 0.59 +0.4
560,702 - PfGW456L13_490 0.59 +2.0
560,702 - PfGW456L13_490 0.59 +0.5
560,919 + PfGW456L13_490 0.70 -1.2
560,919 + PfGW456L13_490 0.70 -0.3
560,919 + PfGW456L13_490 0.70 +0.4
560,919 + PfGW456L13_490 0.70 -0.1
560,920 - PfGW456L13_490 0.70 +0.4
560,976 + PfGW456L13_490 0.73 -0.1
561,057 + PfGW456L13_490 0.77 -0.9
561,057 + PfGW456L13_490 0.77 +2.5
561,058 - PfGW456L13_490 0.77 +0.4
561,345 + -0.2
561,345 + +0.3
561,345 + -0.7
561,401 + -0.1
561,408 + +0.3
561,447 + -1.0
561,447 + -0.6
561,447 + -0.4
561,447 + +0.3
561,447 + -0.0
561,447 + +0.4
561,448 - +0.5
561,477 + +0.7
561,478 - +0.2
561,478 - +0.1
561,526 - -0.8
561,526 - -0.1
561,528 - -0.4
561,532 + +0.1
561,532 + -0.5
561,533 - -0.8
561,554 + -0.0
561,554 + -1.2
561,555 - +0.7
561,555 - -0.2
561,555 - +0.1
561,555 - +0.1
561,555 - -0.1
561,588 + +0.5
561,589 - +0.4
561,589 - -0.4
561,589 - +0.3
561,589 - -1.1
561,595 - -0.7
561,630 - +0.5
561,636 + -0.5
561,636 + -0.6
561,636 + -0.2
561,637 - +1.2
561,637 - +0.6
561,637 - -0.0
561,637 - +0.4
561,637 - -2.5
561,637 - -1.1
561,644 - -1.8
561,644 - +0.1
561,730 + -0.2
561,731 - +0.9
561,731 - -0.4
561,731 - -0.2
561,731 - +0.4
561,731 - +0.8
561,731 - +0.2
561,731 - +0.2
561,853 - PfGW456L13_491 0.18 +0.1
561,853 - PfGW456L13_491 0.18 +0.3
562,025 - PfGW456L13_491 0.33 -0.9
562,254 + PfGW456L13_491 0.52 -0.3
562,254 + PfGW456L13_491 0.52 -0.9
562,255 - PfGW456L13_491 0.52 -1.5
562,255 - PfGW456L13_491 0.52 -0.1
562,255 - PfGW456L13_491 0.52 -2.0
562,255 - PfGW456L13_491 0.52 -0.6
562,270 + PfGW456L13_491 0.53 -0.8
562,270 + PfGW456L13_491 0.53 -1.8
562,270 + PfGW456L13_491 0.53 +0.2
562,270 + PfGW456L13_491 0.53 -1.1
562,270 + PfGW456L13_491 0.53 -0.0
562,271 - PfGW456L13_491 0.54 -0.6
562,271 - PfGW456L13_491 0.54 +0.2
562,275 + PfGW456L13_491 0.54 +0.4
562,275 + PfGW456L13_491 0.54 -0.1
562,276 - PfGW456L13_491 0.54 -1.0
562,276 - PfGW456L13_491 0.54 -1.0
562,469 - PfGW456L13_491 0.70 -0.1
562,601 + PfGW456L13_491 0.81 +0.9
562,601 + PfGW456L13_491 0.81 -1.1
562,601 + PfGW456L13_491 0.81 -1.0
562,601 + PfGW456L13_491 0.81 -1.0
562,601 + PfGW456L13_491 0.81 +0.8
562,601 + PfGW456L13_491 0.81 +0.6
562,601 + PfGW456L13_491 0.81 -0.9
562,601 + PfGW456L13_491 0.81 +0.3
562,601 + PfGW456L13_491 0.81 -0.3
562,601 + PfGW456L13_491 0.81 -0.2
562,601 + PfGW456L13_491 0.81 +0.2
562,601 + PfGW456L13_491 0.81 -2.7
562,601 + PfGW456L13_491 0.81 -0.5
562,602 - PfGW456L13_491 0.81 -0.2
562,602 - PfGW456L13_491 0.81 +0.8
562,602 - PfGW456L13_491 0.81 -0.1
562,602 - PfGW456L13_491 0.81 -1.9
562,602 - PfGW456L13_491 0.81 +0.5
562,602 - PfGW456L13_491 0.81 +0.0
562,602 - PfGW456L13_491 0.81 +0.2
562,602 - PfGW456L13_491 0.81 +1.4
562,602 - PfGW456L13_491 0.81 +0.7
562,602 - PfGW456L13_491 0.81 +0.4
562,602 - PfGW456L13_491 0.81 +0.6
562,602 - PfGW456L13_491 0.81 -1.0
562,602 - PfGW456L13_491 0.81 +1.2
562,602 - PfGW456L13_491 0.81 -1.1
562,643 + PfGW456L13_491 0.85 +0.0
562,643 + PfGW456L13_491 0.85 -1.4
562,643 + -1.1
562,643 + PfGW456L13_491 0.85 -1.8
562,644 - PfGW456L13_491 0.85 +0.0
562,795 + -1.6
562,795 + +0.1
562,796 - -0.5
562,796 - +0.3
562,796 - +1.0
562,796 - -0.8
562,796 - -1.1
562,861 + -0.8
562,861 + -0.3
562,861 + -0.4
562,861 + -0.6
562,861 + -0.5
562,930 + +0.7
562,930 + +0.9
562,941 - +0.6
563,213 + PfGW456L13_492 0.19 +1.2
563,214 - PfGW456L13_492 0.19 +0.2
563,214 - PfGW456L13_492 0.19 -0.1
563,214 - PfGW456L13_492 0.19 -0.3
563,229 - PfGW456L13_492 0.21 -0.0
563,229 - PfGW456L13_492 0.21 -0.8
563,259 + PfGW456L13_492 0.24 -0.6
563,259 + PfGW456L13_492 0.24 -1.3
563,259 + PfGW456L13_492 0.24 +0.7
563,260 - PfGW456L13_492 0.24 -0.5
563,260 - PfGW456L13_492 0.24 +0.5
563,260 - PfGW456L13_492 0.24 +0.1
563,260 - PfGW456L13_492 0.24 -0.5
563,261 - PfGW456L13_492 0.24 +3.8
563,315 + PfGW456L13_492 0.29 +0.4
563,315 + PfGW456L13_492 0.29 +0.4
563,315 + PfGW456L13_492 0.29 +0.8
563,315 + PfGW456L13_492 0.29 +0.1
563,316 - PfGW456L13_492 0.29 +2.0
563,316 - PfGW456L13_492 0.29 +0.8
563,423 + PfGW456L13_492 0.40 +0.1
563,423 + PfGW456L13_492 0.40 +1.2
563,423 + PfGW456L13_492 0.40 +0.8
563,423 + PfGW456L13_492 0.40 +0.9
563,424 - PfGW456L13_492 0.40 -0.0
563,424 - PfGW456L13_492 0.40 +1.0
563,424 - PfGW456L13_492 0.40 +0.0
563,424 - PfGW456L13_492 0.40 +0.4
563,424 - PfGW456L13_492 0.40 +0.4
563,647 + PfGW456L13_492 0.63 -1.1
563,648 - PfGW456L13_492 0.63 +0.9
563,672 + PfGW456L13_492 0.65 +0.3
563,672 + PfGW456L13_492 0.65 +0.3
563,672 + PfGW456L13_492 0.65 +0.0
563,672 + PfGW456L13_492 0.65 +0.2
563,672 + PfGW456L13_492 0.65 +0.6
563,672 + PfGW456L13_492 0.65 -0.5
563,672 + PfGW456L13_492 0.65 +0.1
563,672 + PfGW456L13_492 0.65 -0.5
563,672 + PfGW456L13_492 0.65 +0.7
563,672 + PfGW456L13_492 0.65 +0.8
563,673 - PfGW456L13_492 0.66 -0.0
563,673 - PfGW456L13_492 0.66 +0.1
563,673 - PfGW456L13_492 0.66 -0.2
563,673 - PfGW456L13_492 0.66 +0.6
563,673 - PfGW456L13_492 0.66 +0.4
563,673 - PfGW456L13_492 0.66 -0.3
563,673 - PfGW456L13_492 0.66 +1.1
563,673 - PfGW456L13_492 0.66 +0.6
563,673 - PfGW456L13_492 0.66 +1.3
563,673 - PfGW456L13_492 0.66 -0.5
563,673 - PfGW456L13_492 0.66 -0.3
563,673 - PfGW456L13_492 0.66 +0.4
563,673 - PfGW456L13_492 0.66 -2.1
563,673 - PfGW456L13_492 0.66 -1.1
563,673 - PfGW456L13_492 0.66 +1.0

Or see this region's nucleotide sequence