Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4844 and PfGW456L13_4845 overlap by 4 nucleotides PfGW456L13_4845 and PfGW456L13_4846 overlap by 15 nucleotides PfGW456L13_4846 and PfGW456L13_4847 are separated by 60 nucleotides PfGW456L13_4847 and PfGW456L13_4848 are separated by 8 nucleotides
PfGW456L13_4844 - FIG000988: Predicted permease, at 5,412,397 to 5,413,515
_4844
PfGW456L13_4845 - hypothetical protein, at 5,413,512 to 5,413,889
_4845
PfGW456L13_4846 - Cytosol aminopeptidase PepA (EC 3.4.11.1), at 5,413,875 to 5,415,398
_4846
PfGW456L13_4847 - DNA polymerase III chi subunit (EC 2.7.7.7), at 5,415,459 to 5,415,887
_4847
PfGW456L13_4848 - FIG00957284: hypothetical protein, at 5,415,896 to 5,416,303
_4848
Position (kb) 5413
5414
5415
5416 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5413.611 kb on - strand, within PfGW456L13_4845 at 5413.659 kb on - strand, within PfGW456L13_4845 at 5413.659 kb on - strand, within PfGW456L13_4845 at 5413.753 kb on - strand, within PfGW456L13_4845 at 5413.841 kb on + strand, within PfGW456L13_4845 at 5413.841 kb on + strand, within PfGW456L13_4845 at 5413.842 kb on - strand, within PfGW456L13_4845 at 5413.842 kb on - strand, within PfGW456L13_4845 at 5413.843 kb on + strand, within PfGW456L13_4845 at 5413.843 kb on + strand, within PfGW456L13_4845 at 5413.843 kb on + strand, within PfGW456L13_4845 at 5413.843 kb on + strand, within PfGW456L13_4845 at 5413.843 kb on + strand, within PfGW456L13_4845 at 5413.844 kb on - strand, within PfGW456L13_4845 at 5413.844 kb on - strand, within PfGW456L13_4845 at 5413.844 kb on - strand, within PfGW456L13_4845 at 5413.860 kb on + strand at 5413.860 kb on + strand at 5413.860 kb on + strand at 5413.860 kb on + strand at 5413.860 kb on + strand at 5413.860 kb on + strand at 5413.860 kb on + strand at 5413.860 kb on + strand at 5413.860 kb on + strand at 5413.860 kb on + strand at 5413.860 kb on + strand at 5413.860 kb on + strand at 5413.860 kb on + strand at 5413.860 kb on + strand at 5413.860 kb on + strand at 5413.861 kb on - strand at 5413.861 kb on - strand at 5413.861 kb on - strand at 5413.861 kb on - strand at 5413.861 kb on - strand at 5413.861 kb on - strand at 5413.861 kb on - strand at 5413.861 kb on - strand at 5413.861 kb on - strand at 5413.861 kb on - strand at 5413.861 kb on - strand at 5413.861 kb on - strand at 5413.861 kb on - strand at 5413.861 kb on - strand at 5413.861 kb on - strand at 5413.861 kb on - strand at 5413.884 kb on - strand at 5413.921 kb on + strand at 5413.921 kb on + strand at 5413.921 kb on + strand at 5414.274 kb on + strand, within PfGW456L13_4846 at 5414.275 kb on - strand, within PfGW456L13_4846 at 5414.275 kb on - strand, within PfGW456L13_4846 at 5414.320 kb on - strand, within PfGW456L13_4846 at 5414.658 kb on + strand, within PfGW456L13_4846 at 5414.658 kb on + strand, within PfGW456L13_4846 at 5414.658 kb on + strand, within PfGW456L13_4846 at 5414.658 kb on + strand, within PfGW456L13_4846 at 5414.658 kb on + strand, within PfGW456L13_4846 at 5414.658 kb on + strand, within PfGW456L13_4846 at 5414.658 kb on + strand, within PfGW456L13_4846 at 5414.659 kb on - strand, within PfGW456L13_4846 at 5414.659 kb on - strand, within PfGW456L13_4846 at 5414.659 kb on - strand, within PfGW456L13_4846 at 5414.688 kb on + strand, within PfGW456L13_4846 at 5414.769 kb on + strand, within PfGW456L13_4846 at 5414.769 kb on + strand, within PfGW456L13_4846 at 5414.769 kb on + strand, within PfGW456L13_4846 at 5414.769 kb on + strand, within PfGW456L13_4846 at 5414.769 kb on + strand, within PfGW456L13_4846 at 5414.988 kb on + strand, within PfGW456L13_4846 at 5414.989 kb on - strand, within PfGW456L13_4846 at 5415.172 kb on - strand, within PfGW456L13_4846 at 5415.172 kb on - strand, within PfGW456L13_4846 at 5415.172 kb on - strand, within PfGW456L13_4846 at 5415.373 kb on - strand at 5415.477 kb on + strand at 5415.477 kb on + strand at 5415.477 kb on + strand at 5415.477 kb on + strand at 5415.477 kb on + strand at 5415.477 kb on + strand at 5415.477 kb on + strand at 5415.477 kb on + strand at 5415.477 kb on + strand at 5415.477 kb on + strand at 5415.477 kb on + strand at 5415.478 kb on - strand at 5415.478 kb on - strand at 5415.478 kb on - strand at 5415.478 kb on - strand at 5415.478 kb on - strand at 5415.478 kb on - strand at 5415.478 kb on - strand at 5415.478 kb on - strand at 5415.478 kb on - strand at 5415.478 kb on - strand at 5415.478 kb on - strand at 5415.478 kb on - strand at 5415.478 kb on - strand at 5415.478 kb on - strand at 5415.478 kb on - strand at 5415.478 kb on - strand at 5415.478 kb on - strand at 5415.478 kb on - strand at 5415.479 kb on + strand at 5415.479 kb on + strand at 5415.480 kb on - strand at 5415.564 kb on + strand at 5415.564 kb on + strand, within PfGW456L13_4847 at 5415.565 kb on - strand, within PfGW456L13_4847 at 5415.565 kb on - strand, within PfGW456L13_4847 at 5415.837 kb on + strand, within PfGW456L13_4847 at 5415.852 kb on + strand at 5415.874 kb on + strand at 5415.875 kb on - strand at 5416.292 kb on + strand at 5416.292 kb on + strand at 5416.293 kb on - strand at 5416.293 kb on - strand at 5416.293 kb on - strand at 5416.314 kb on + strand at 5416.314 kb on + strand at 5416.315 kb on - strand at 5416.315 kb on - strand at 5416.315 kb on - strand at 5416.322 kb on + strand at 5416.322 kb on + strand at 5416.322 kb on + strand at 5416.322 kb on + strand at 5416.323 kb on - strand at 5416.323 kb on - strand at 5416.323 kb on - strand at 5416.323 kb on - strand at 5416.323 kb on - strand at 5416.327 kb on + strand at 5416.327 kb on + strand at 5416.328 kb on - strand at 5416.328 kb on - strand at 5416.372 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 5,413,611 - PfGW456L13_4845 0.26 -1.0 5,413,659 - PfGW456L13_4845 0.39 -0.7 5,413,659 - PfGW456L13_4845 0.39 -0.5 5,413,753 - PfGW456L13_4845 0.64 +0.2 5,413,841 + PfGW456L13_4845 0.87 +0.4 5,413,841 + PfGW456L13_4845 0.87 +0.0 5,413,842 - PfGW456L13_4845 0.87 -0.3 5,413,842 - PfGW456L13_4845 0.87 -0.9 5,413,843 + PfGW456L13_4845 0.88 +0.2 5,413,843 + PfGW456L13_4845 0.88 +0.0 5,413,843 + PfGW456L13_4845 0.88 -0.7 5,413,843 + PfGW456L13_4845 0.88 +0.1 5,413,843 + PfGW456L13_4845 0.88 -0.3 5,413,844 - PfGW456L13_4845 0.88 +0.5 5,413,844 - PfGW456L13_4845 0.88 -0.8 5,413,844 - PfGW456L13_4845 0.88 +0.4 5,413,860 + +0.0 5,413,860 + +0.4 5,413,860 + +0.5 5,413,860 + -0.7 5,413,860 + -1.4 5,413,860 + +0.4 5,413,860 + +0.1 5,413,860 + -0.1 5,413,860 + -0.3 5,413,860 + +0.1 5,413,860 + +0.7 5,413,860 + -1.6 5,413,860 + +0.2 5,413,860 + +0.5 5,413,860 + +0.4 5,413,861 - +0.1 5,413,861 - +0.1 5,413,861 - -0.6 5,413,861 - +0.3 5,413,861 - -0.3 5,413,861 - -0.4 5,413,861 - -0.1 5,413,861 - -0.2 5,413,861 - -0.3 5,413,861 - -0.3 5,413,861 - -0.4 5,413,861 - -0.1 5,413,861 - +0.9 5,413,861 - -1.6 5,413,861 - +0.0 5,413,861 - +1.0 5,413,884 - -0.3 5,413,921 + -1.1 5,413,921 + -1.0 5,413,921 + +0.5 5,414,274 + PfGW456L13_4846 0.26 +0.0 5,414,275 - PfGW456L13_4846 0.26 +0.5 5,414,275 - PfGW456L13_4846 0.26 -0.8 5,414,320 - PfGW456L13_4846 0.29 +0.9 5,414,658 + PfGW456L13_4846 0.51 -0.6 5,414,658 + PfGW456L13_4846 0.51 -0.2 5,414,658 + PfGW456L13_4846 0.51 -0.9 5,414,658 + PfGW456L13_4846 0.51 +0.1 5,414,658 + PfGW456L13_4846 0.51 -1.0 5,414,658 + PfGW456L13_4846 0.51 -0.4 5,414,658 + PfGW456L13_4846 0.51 -1.4 5,414,659 - PfGW456L13_4846 0.51 -1.1 5,414,659 - PfGW456L13_4846 0.51 -0.9 5,414,659 - PfGW456L13_4846 0.51 -0.3 5,414,688 + PfGW456L13_4846 0.53 -1.0 5,414,769 + PfGW456L13_4846 0.59 -0.6 5,414,769 + PfGW456L13_4846 0.59 -0.5 5,414,769 + PfGW456L13_4846 0.59 +1.0 5,414,769 + PfGW456L13_4846 0.59 -2.0 5,414,769 + PfGW456L13_4846 0.59 -1.0 5,414,988 + PfGW456L13_4846 0.73 -1.1 5,414,989 - PfGW456L13_4846 0.73 -2.0 5,415,172 - PfGW456L13_4846 0.85 -1.3 5,415,172 - PfGW456L13_4846 0.85 -0.4 5,415,172 - PfGW456L13_4846 0.85 -0.3 5,415,373 - -0.3 5,415,477 + -1.1 5,415,477 + +1.2 5,415,477 + +0.3 5,415,477 + +0.8 5,415,477 + +0.5 5,415,477 + +0.3 5,415,477 + -1.2 5,415,477 + -0.7 5,415,477 + -0.2 5,415,477 + -0.4 5,415,477 + -0.1 5,415,478 - +0.2 5,415,478 - -0.8 5,415,478 - +0.1 5,415,478 - -1.5 5,415,478 - +0.8 5,415,478 - +1.7 5,415,478 - +0.6 5,415,478 - -0.7 5,415,478 - +0.5 5,415,478 - -0.3 5,415,478 - +2.0 5,415,478 - +0.8 5,415,478 - +0.7 5,415,478 - +0.4 5,415,478 - +0.4 5,415,478 - +0.3 5,415,478 - +0.2 5,415,478 - -0.4 5,415,479 + -0.1 5,415,479 + -0.1 5,415,480 - -0.0 5,415,564 + +0.0 5,415,564 + PfGW456L13_4847 0.24 +0.2 5,415,565 - PfGW456L13_4847 0.25 -0.2 5,415,565 - PfGW456L13_4847 0.25 +0.2 5,415,837 + PfGW456L13_4847 0.88 -0.3 5,415,852 + +0.3 5,415,874 + +1.5 5,415,875 - +0.8 5,416,292 + +0.3 5,416,292 + +0.6 5,416,293 - +0.0 5,416,293 - +1.5 5,416,293 - +0.9 5,416,314 + +0.3 5,416,314 + +0.2 5,416,315 - +0.2 5,416,315 - +0.8 5,416,315 - +0.3 5,416,322 + +0.0 5,416,322 + -0.6 5,416,322 + -0.5 5,416,322 + -0.0 5,416,323 - +0.2 5,416,323 - +0.2 5,416,323 - +0.8 5,416,323 - +0.1 5,416,323 - -0.5 5,416,327 + -0.0 5,416,327 + -0.3 5,416,328 - +0.4 5,416,328 - +0.7 5,416,372 - +0.2
Or see this region's nucleotide sequence